Wall clock time and date at job start Tue Mar 31 2020 11:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 N 1.46493 * 109.47064 * 184.60968 * 3 2 1 5 5 C 1.36945 * 119.99887 * 274.32251 * 4 3 2 6 6 H 1.08003 * 119.99759 * 324.47870 * 5 4 3 7 7 C 1.38814 * 119.99766 * 144.47604 * 5 4 3 8 8 N 1.31614 * 119.99499 * 156.27169 * 7 5 4 9 9 Si 1.86796 * 120.00037 * 336.27639 * 7 5 4 10 10 H 1.48496 * 109.47535 * 94.18422 * 9 7 5 11 11 H 1.48502 * 109.46711 * 214.17796 * 9 7 5 12 12 H 1.48500 * 109.47458 * 334.17813 * 9 7 5 13 13 C 1.46492 * 120.00239 * 94.32545 * 4 3 2 14 14 C 1.53001 * 109.47166 * 85.93251 * 13 4 3 15 15 H 1.09005 * 109.46978 * 305.59405 * 14 13 4 16 16 O 1.42892 * 109.47470 * 65.60250 * 14 13 4 17 17 C 1.53007 * 109.47049 * 185.60086 * 14 13 4 18 18 O 1.42903 * 109.47074 * 175.17107 * 17 14 13 19 19 C 1.35922 * 116.99877 * 179.97438 * 18 17 14 20 20 C 1.38703 * 120.06024 * 0.02562 * 19 18 17 21 21 C 1.38160 * 119.95446 * 180.02562 * 20 19 18 22 22 C 1.38272 * 120.07761 * 359.97438 * 21 20 19 23 23 C 1.38250 * 120.12223 * 0.02562 * 22 21 20 24 24 C 1.38259 * 120.03926 * 359.67701 * 23 22 21 25 25 Cl 1.73600 * 120.04022 * 180.31449 * 24 23 22 26 26 H 1.08996 * 109.47492 * 59.99881 * 1 2 3 27 27 H 1.09002 * 109.47412 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47040 * 299.99858 * 1 2 3 29 29 H 1.08998 * 109.46666 * 240.00171 * 2 1 3 30 30 H 1.09004 * 109.46901 * 119.99981 * 2 1 3 31 31 H 1.09002 * 109.46959 * 64.60994 * 3 2 1 32 32 H 1.09001 * 109.46948 * 304.61153 * 3 2 1 33 33 H 0.97001 * 119.99851 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47373 * 325.92994 * 13 4 3 35 35 H 1.09001 * 109.47305 * 205.93328 * 13 4 3 36 36 H 0.96703 * 114.00213 * 59.99547 * 16 14 13 37 37 H 1.09000 * 109.47140 * 295.16941 * 17 14 13 38 38 H 1.09003 * 109.46790 * 55.17160 * 17 14 13 39 39 H 1.07998 * 120.02284 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.95516 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.93957 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.98114 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4440 -0.1110 5 6 4.2730 1.3236 1.0135 6 1 3.9525 1.7773 1.9398 7 6 5.4676 0.6185 0.9628 8 7 6.4175 0.8696 1.8386 9 14 5.7270 -0.6865 -0.3483 10 1 6.4228 -0.0853 -1.5143 11 1 6.5533 -1.7884 0.2069 12 1 4.4114 -1.2233 -0.7797 13 6 4.1354 1.5742 -1.4249 14 6 4.2739 3.0561 -1.7797 15 1 3.2993 3.5392 -1.7088 16 8 5.1826 3.6807 -0.8709 17 6 4.8072 3.1909 -3.2075 18 8 4.8303 4.5706 -3.5790 19 6 5.2816 4.8662 -4.8265 20 6 5.6930 3.8495 -5.6756 21 6 6.1519 4.1525 -6.9430 22 6 6.2009 5.4680 -7.3662 23 6 5.7917 6.4839 -6.5226 24 6 5.3258 6.1858 -5.2554 25 17 4.8043 7.4608 -4.1990 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7457 1.9319 0.9284 32 1 1.6108 1.9796 -0.8458 33 1 7.2522 0.3766 1.8034 34 1 3.5218 1.0766 -2.1757 35 1 5.1227 1.1131 -1.3988 36 1 6.0718 3.3007 -0.8804 37 1 5.8171 2.7840 -3.2580 38 1 4.1594 2.6415 -3.8906 39 1 5.6547 2.8217 -5.3461 40 1 6.4726 3.3609 -7.6040 41 1 6.5596 5.7023 -8.3576 42 1 5.8313 7.5106 -6.8553 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:59 Heat of formation + Delta-G solvation = -68.535032 kcal Electronic energy + Delta-G solvation = -24040.514331 eV Core-core repulsion = 20432.812816 eV Total energy + Delta-G solvation = -3607.701515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23855 -39.40730 -38.27190 -37.32053 -36.85079 -34.52295 -33.23547 -31.95484 -31.61119 -30.45511 -27.62241 -27.30221 -24.31544 -23.65154 -23.22734 -22.50935 -21.53255 -19.54725 -18.84567 -17.80878 -17.60751 -17.15054 -16.98650 -16.48945 -16.08791 -15.83028 -15.59608 -15.47956 -15.18754 -14.85513 -14.35214 -14.29234 -14.09725 -13.96298 -13.94393 -13.35001 -12.85196 -12.83476 -12.51129 -12.45432 -12.34993 -12.29810 -12.17876 -12.00266 -11.95167 -11.88946 -11.73130 -11.40573 -11.35822 -10.98050 -10.57597 -9.90794 -9.20210 -8.76363 -8.12370 -5.46919 0.13845 0.32816 1.22063 1.25562 1.43900 1.53302 2.03080 2.43702 2.64350 3.07090 3.34422 3.59030 3.72762 3.81657 3.92687 4.08384 4.13728 4.21794 4.27566 4.32206 4.34300 4.38062 4.42060 4.51882 4.62603 4.73067 4.77844 4.81167 4.92981 5.07968 5.12136 5.17850 5.26296 5.26746 5.42022 5.43547 5.58504 5.70801 5.98510 6.22757 6.28424 6.85285 7.03024 7.67082 8.06811 9.08101 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003632 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.830564 B = 7708.121100 C = 8073.113291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.146 3.854 4 N -0.606 5.606 5 C -0.238 4.238 6 H 0.030 0.970 7 C -0.018 4.018 8 N -0.948 5.948 9 Si 0.933 3.067 10 H -0.264 1.264 11 H -0.316 1.316 12 H -0.257 1.257 13 C 0.107 3.893 14 C 0.098 3.902 15 H 0.092 0.908 16 O -0.558 6.558 17 C 0.032 3.968 18 O -0.314 6.314 19 C 0.115 3.885 20 C -0.210 4.210 21 C -0.072 4.072 22 C -0.145 4.145 23 C -0.077 4.077 24 C -0.096 4.096 25 Cl -0.076 7.076 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.371 0.629 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 5.174 -22.475 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.021 3.979 4 N -0.328 5.328 5 C -0.368 4.368 6 H 0.047 0.953 7 C -0.213 4.213 8 N -0.593 5.593 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.245 1.245 12 H -0.181 1.181 13 C -0.019 4.019 14 C 0.036 3.964 15 H 0.110 0.890 16 O -0.363 6.363 17 C -0.044 4.044 18 O -0.228 6.228 19 C 0.068 3.932 20 C -0.229 4.229 21 C -0.090 4.090 22 C -0.163 4.163 23 C -0.095 4.095 24 C -0.123 4.123 25 Cl -0.047 7.047 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.218 0.782 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.273 5.740 -22.002 23.136 hybrid contribution 0.998 -1.019 0.311 1.460 sum -3.275 4.721 -21.691 22.439 Atomic orbital electron populations 1.21666 0.94014 1.01900 1.02131 1.21996 0.96508 0.98750 1.00530 1.21081 0.82023 0.95006 0.99744 1.44069 1.01911 1.84484 1.02298 1.18490 1.02036 1.26318 0.90003 0.95264 1.25895 0.96133 0.99918 0.99398 1.70047 1.05560 1.42456 1.41204 0.86055 0.78058 0.80178 0.79485 1.19106 1.24508 1.18085 1.21911 0.98205 0.93725 0.88045 1.22664 0.93476 0.95429 0.84842 0.89029 1.86587 1.24523 1.61182 1.63978 1.23759 1.02468 0.80360 0.97839 1.86239 1.79644 1.28460 1.28428 1.19159 0.95504 0.93071 0.85418 1.21541 1.06243 0.98918 0.96166 1.21475 0.95003 0.98048 0.94462 1.21436 1.01878 0.91724 1.01269 1.21247 0.96117 1.02087 0.90047 1.20572 1.10304 0.86822 0.94616 1.98362 1.89538 1.50165 1.66619 0.91564 0.92267 0.92835 0.93134 0.94608 0.94726 0.91411 0.93080 0.90103 0.93262 0.78228 0.91121 0.88647 0.83627 0.82149 0.81706 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.14 -4.68 6.24 30.59 0.19 -4.49 16 3 C 0.15 5.49 5.69 86.38 0.49 5.98 16 4 N -0.61 -27.15 2.08 -702.02 -1.46 -28.62 16 5 C -0.24 -13.26 9.66 84.03 0.81 -12.45 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 7 C -0.02 -1.00 5.27 84.86 0.45 -0.55 16 8 N -0.95 -58.18 13.97 21.65 0.30 -57.88 16 9 Si 0.93 43.28 25.10 68.60 1.72 45.00 16 10 H -0.26 -11.04 6.59 99.48 0.66 -10.38 16 11 H -0.32 -15.34 7.11 99.48 0.71 -14.63 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 13 C 0.11 4.05 4.01 86.38 0.35 4.39 16 14 C 0.10 3.48 3.49 30.60 0.11 3.59 16 15 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 16 O -0.56 -24.32 12.99 -144.17 -1.87 -26.20 16 17 C 0.03 0.88 4.38 71.98 0.31 1.20 16 18 O -0.31 -9.89 9.56 -87.86 -0.84 -10.73 16 19 C 0.12 3.08 6.68 22.52 0.15 3.23 16 20 C -0.21 -4.31 9.04 22.36 0.20 -4.11 16 21 C -0.07 -1.08 10.04 22.26 0.22 -0.85 16 22 C -0.14 -2.01 10.04 22.28 0.22 -1.79 16 23 C -0.08 -1.38 9.83 22.28 0.22 -1.17 16 24 C -0.10 -2.42 6.33 22.41 0.14 -2.28 16 25 Cl -0.08 -2.08 28.50 -2.72 -0.08 -2.16 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 32 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.08 2.50 8.10 -2.39 -0.02 2.48 16 35 H 0.05 2.02 3.27 -2.39 -0.01 2.01 16 36 H 0.37 15.32 9.05 -74.06 -0.67 14.65 16 37 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 38 H 0.10 2.09 7.66 -2.39 -0.02 2.07 16 39 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.59 361.17 2.65 -67.93 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.30 Total: 24.74 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.58 Total: -12.09 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.16 Total: -86.50 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -2.71 Total: -36.93 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.72 Total: 45.00 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.08 Total: -2.16 kcal Total: -70.59 2.65 -67.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.601 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds