Wall clock time and date at job start Tue Mar 31 2020 10:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38542 * 120.01305 * 2 1 4 4 C 1.40093 * 117.80910 * 180.26025 * 3 2 1 5 5 C 1.48108 * 121.14267 * 179.78519 * 4 3 2 6 6 O 1.21524 * 119.99618 * 182.74498 * 5 4 3 7 7 N 1.34771 * 119.99909 * 2.74219 * 5 4 3 8 8 C 1.39834 * 120.00074 * 174.19498 * 7 5 4 9 9 C 1.38982 * 120.03905 * 147.78443 * 8 7 5 10 10 C 1.38157 * 120.06497 * 179.97438 * 9 8 7 11 11 C 1.38170 * 120.13685 * 359.72998 * 10 9 8 12 12 C 1.38912 * 120.08065 * 0.54675 * 11 10 9 13 13 O 1.35751 * 120.03478 * 179.72113 * 12 11 10 14 14 C 1.34827 * 117.00040 * 353.89734 * 13 12 11 15 15 H 1.07999 * 120.00136 * 5.08672 * 14 13 12 16 16 C 1.38654 * 120.00127 * 185.08061 * 14 13 12 17 17 N 1.31551 * 120.00328 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99683 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47342 * 89.99595 * 18 16 14 20 20 H 1.48506 * 109.47074 * 209.99596 * 18 16 14 21 21 H 1.48497 * 109.47199 * 329.99537 * 18 16 14 22 22 C 1.38743 * 120.03824 * 327.76750 * 8 7 5 23 23 C 1.39779 * 117.70670 * 359.51042 * 4 3 2 24 24 C 1.50702 * 120.17250 * 180.27373 * 23 4 3 25 25 N 1.31884 * 119.65390 * 0.25343 * 23 4 3 26 26 N 1.28280 * 122.33381 * 359.97438 * 25 23 4 27 27 H 1.09004 * 109.47403 * 270.23826 * 1 2 3 28 28 H 1.09004 * 109.47117 * 30.24195 * 1 2 3 29 29 H 1.09001 * 109.47611 * 150.23807 * 1 2 3 30 30 H 1.07996 * 121.09117 * 0.02592 * 3 2 1 31 31 H 0.97003 * 120.00485 * 354.20038 * 7 5 4 32 32 H 1.07998 * 119.96962 * 0.02562 * 9 8 7 33 33 H 1.08002 * 119.92857 * 179.97438 * 10 9 8 34 34 H 1.08003 * 119.96064 * 180.27635 * 11 10 9 35 35 H 0.96996 * 120.00550 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.06602 * 0.04201 * 22 8 7 37 37 H 1.09000 * 109.47196 * 82.45305 * 24 23 4 38 38 H 1.09001 * 109.47059 * 202.45227 * 24 23 4 39 39 H 1.09002 * 109.47078 * 322.45185 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5999 1.1458 -0.0056 5 6 4.4140 2.3830 -0.0108 6 8 5.6259 2.3126 -0.0660 7 7 3.8107 3.5869 0.0458 8 6 4.5792 4.7492 0.1634 9 6 4.1423 5.9338 -0.4173 10 6 4.9008 7.0826 -0.3010 11 6 6.0928 7.0591 0.3974 12 6 6.5380 5.8769 0.9753 13 8 7.7120 5.8535 1.6564 14 6 8.4585 6.9760 1.6282 15 1 8.0771 7.8662 1.1503 16 6 9.7157 6.9873 2.2129 17 7 10.4442 8.0823 2.1850 18 14 10.3754 5.4473 3.0390 19 1 11.1181 4.6316 2.0447 20 1 11.2886 5.8315 4.1452 21 1 9.2441 4.6544 3.5837 22 6 5.7786 4.7212 0.8603 23 6 4.2017 -0.1158 -0.0003 24 6 5.7037 -0.2384 0.0003 25 7 3.4482 -1.1982 0.0046 26 7 2.1667 -1.1420 0.0052 27 1 -0.3634 0.0043 1.0277 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5101 30 1 1.6781 2.1452 0.0004 31 1 2.8434 3.6471 0.0049 32 1 3.2085 5.9566 -0.9594 33 1 4.5594 8.0019 -0.7535 34 1 6.6814 7.9599 0.4903 35 1 11.3238 8.0902 2.5936 36 1 6.1205 3.8018 1.3122 37 1 6.0768 -0.1292 1.0186 38 1 5.9886 -1.2163 -0.3881 39 1 6.1322 0.5414 -0.6293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135606012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:40 Heat of formation + Delta-G solvation = 31.129656 kcal Electronic energy + Delta-G solvation = -24665.273271 eV Core-core repulsion = 20960.786048 eV Total energy + Delta-G solvation = -3704.487223 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74727 -40.24079 -38.87373 -36.90183 -35.06181 -34.37867 -33.76342 -32.42535 -30.43895 -29.71083 -28.62470 -27.11945 -25.57517 -25.20524 -23.37907 -22.51333 -21.42021 -20.59794 -18.54914 -18.08248 -17.75757 -17.25560 -16.07149 -16.02375 -15.67071 -15.34886 -15.22642 -14.97756 -14.43378 -13.96239 -13.93522 -13.74633 -13.67464 -13.52905 -13.01729 -12.97450 -12.65995 -12.49061 -12.36797 -12.26747 -11.86078 -11.37724 -11.24719 -11.07979 -10.89351 -10.61211 -10.52454 -10.24698 -10.02199 -9.82436 -9.65579 -9.36987 -8.90959 -7.94430 -7.42572 -6.45298 -4.12327 -0.06789 0.47072 1.79201 2.11955 2.60105 2.71765 3.21522 3.23888 3.27120 3.41106 3.55874 3.83561 3.97637 4.18176 4.22499 4.30012 4.41778 4.70052 4.82228 4.85109 5.06574 5.07164 5.09001 5.35531 5.41240 5.44848 5.56204 5.58731 5.68950 5.82795 5.88758 5.98935 6.13228 6.16536 6.35918 6.61105 6.77444 7.00026 7.21557 7.32645 7.45388 7.74150 7.90268 7.99409 8.32462 8.89749 9.51095 10.61893 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.003301 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.789505 B = 8480.638329 C = 9739.843336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.055 3.945 3 C -0.082 4.082 4 C -0.126 4.126 5 C 0.556 3.444 6 O -0.486 6.486 7 N -0.658 5.658 8 C 0.172 3.828 9 C -0.226 4.226 10 C -0.057 4.057 11 C -0.229 4.229 12 C 0.175 3.825 13 O -0.211 6.211 14 C -0.390 4.390 15 H 0.108 0.892 16 C 0.065 3.935 17 N -0.877 5.877 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.188 4.188 23 C 0.123 3.877 24 C -0.114 4.114 25 N -0.241 5.241 26 N -0.224 5.224 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.405 0.595 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.280 0.720 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.319 -11.504 -4.861 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.089 4.089 3 C -0.111 4.111 4 C -0.141 4.141 5 C 0.342 3.658 6 O -0.359 6.359 7 N -0.303 5.303 8 C 0.079 3.921 9 C -0.247 4.247 10 C -0.076 4.076 11 C -0.249 4.249 12 C 0.121 3.879 13 O -0.116 6.116 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.138 4.138 17 N -0.514 5.514 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.209 4.209 23 C -0.022 4.022 24 C -0.172 4.172 25 N -0.083 5.083 26 N -0.067 5.067 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.172 0.828 31 H 0.242 0.758 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.164 -13.323 -4.669 23.005 hybrid contribution -0.156 1.266 0.295 1.310 sum -18.320 -12.057 -4.374 22.363 Atomic orbital electron populations 1.20698 0.86876 1.04336 1.03907 1.22857 0.99347 0.89878 0.96853 1.22536 0.93230 1.00510 0.94864 1.21080 0.94257 0.95594 1.03145 1.17927 0.87617 0.82669 0.77616 1.90829 1.13070 1.85883 1.46145 1.43202 1.10097 1.04663 1.72302 1.17085 0.92523 0.84760 0.97703 1.20310 1.03033 0.92736 1.08607 1.20574 0.93615 0.96807 0.96633 1.21333 0.99023 0.99181 1.05353 1.18811 0.86608 0.92493 0.89945 1.83579 1.27146 1.39247 1.61599 1.20781 0.98017 0.88966 1.38799 0.87467 1.24459 0.94642 0.98192 0.96545 1.69636 1.11595 1.27025 1.43193 0.86197 0.79326 0.82253 0.79278 1.19706 1.20739 1.18316 1.20011 0.96437 0.98013 1.06428 1.23194 0.99911 0.88299 0.90767 1.21108 0.86115 1.04824 1.05125 1.73096 0.98827 1.26246 1.10104 1.72814 1.01938 1.24942 1.07005 0.89610 0.90033 0.89680 0.82823 0.75843 0.87068 0.86555 0.84683 0.90960 0.85151 0.89209 0.90397 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.19 36.00 0.37 -0.12 16 2 C 0.06 0.49 6.86 -82.46 -0.57 -0.08 16 3 C -0.08 -0.67 9.36 -38.77 -0.36 -1.03 16 4 C -0.13 -1.44 5.92 -104.57 -0.62 -2.06 16 5 C 0.56 7.57 7.51 -12.21 -0.09 7.47 16 6 O -0.49 -8.33 11.06 5.35 0.06 -8.27 16 7 N -0.66 -8.08 5.30 -10.66 -0.06 -8.14 16 8 C 0.17 2.81 6.29 -83.75 -0.53 2.28 16 9 C -0.23 -3.40 9.96 -39.34 -0.39 -3.79 16 10 C -0.06 -0.96 10.03 -39.64 -0.40 -1.36 16 11 C -0.23 -4.75 9.16 -39.36 -0.36 -5.11 16 12 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 13 O -0.21 -5.59 8.58 0.05 0.00 -5.59 16 14 C -0.39 -10.90 9.95 30.89 0.31 -10.59 16 15 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 16 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 17 N -0.88 -25.13 13.96 55.48 0.77 -24.36 16 18 Si 0.90 21.83 28.62 -169.99 -4.86 16.96 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.19 -3.81 8.60 -39.20 -0.34 -4.15 16 23 C 0.12 1.54 6.91 -81.99 -0.57 0.98 16 24 C -0.11 -1.36 9.07 36.01 0.33 -1.03 16 25 N -0.24 -3.21 11.42 33.81 0.39 -2.82 16 26 N -0.22 -2.70 11.40 33.57 0.38 -2.32 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.15 0.66 6.62 -52.49 -0.35 0.31 16 31 H 0.41 3.23 7.01 -40.82 -0.29 2.94 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.14 2.93 5.64 -52.48 -0.30 2.63 16 35 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.13 2.75 6.34 -52.48 -0.33 2.42 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 1.49 5.76 -51.93 -0.30 1.19 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -32.86 335.51 -5.78 -38.63 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.94 Total: 3.95 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.58 Total: -13.10 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 1.49 Total: -37.63 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.06 Total: -13.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.86 -5.78 -38.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135606012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.761 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds