Wall clock time and date at job start Tue Mar 31 2020 10:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38542 * 120.01305 * 2 1 4 4 C 1.40093 * 117.80910 * 180.26025 * 3 2 1 5 5 C 1.48108 * 121.14267 * 179.78519 * 4 3 2 6 6 O 1.21524 * 119.99618 * 182.74498 * 5 4 3 7 7 N 1.34771 * 119.99909 * 2.74219 * 5 4 3 8 8 C 1.39834 * 120.00074 * 174.19498 * 7 5 4 9 9 C 1.38982 * 120.03905 * 147.78443 * 8 7 5 10 10 C 1.38157 * 120.06497 * 179.97438 * 9 8 7 11 11 C 1.38170 * 120.13685 * 359.72998 * 10 9 8 12 12 C 1.38912 * 120.08065 * 0.54675 * 11 10 9 13 13 O 1.35751 * 120.03478 * 179.72113 * 12 11 10 14 14 C 1.34827 * 117.00040 * 353.89734 * 13 12 11 15 15 H 1.07999 * 120.00136 * 5.08672 * 14 13 12 16 16 C 1.38654 * 120.00127 * 185.08061 * 14 13 12 17 17 N 1.31551 * 120.00328 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99683 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47342 * 89.99595 * 18 16 14 20 20 H 1.48506 * 109.47074 * 209.99596 * 18 16 14 21 21 H 1.48497 * 109.47199 * 329.99537 * 18 16 14 22 22 C 1.38743 * 120.03824 * 327.76750 * 8 7 5 23 23 C 1.39779 * 117.70670 * 359.51042 * 4 3 2 24 24 C 1.50702 * 120.17250 * 180.27373 * 23 4 3 25 25 N 1.31884 * 119.65390 * 0.25343 * 23 4 3 26 26 N 1.28280 * 122.33381 * 359.97438 * 25 23 4 27 27 H 1.09004 * 109.47403 * 270.23826 * 1 2 3 28 28 H 1.09004 * 109.47117 * 30.24195 * 1 2 3 29 29 H 1.09001 * 109.47611 * 150.23807 * 1 2 3 30 30 H 1.07996 * 121.09117 * 0.02592 * 3 2 1 31 31 H 0.97003 * 120.00485 * 354.20038 * 7 5 4 32 32 H 1.07998 * 119.96962 * 0.02562 * 9 8 7 33 33 H 1.08002 * 119.92857 * 179.97438 * 10 9 8 34 34 H 1.08003 * 119.96064 * 180.27635 * 11 10 9 35 35 H 0.96996 * 120.00550 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.06602 * 0.04201 * 22 8 7 37 37 H 1.09000 * 109.47196 * 82.45305 * 24 23 4 38 38 H 1.09001 * 109.47059 * 202.45227 * 24 23 4 39 39 H 1.09002 * 109.47078 * 322.45185 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5999 1.1458 -0.0056 5 6 4.4140 2.3830 -0.0108 6 8 5.6259 2.3126 -0.0660 7 7 3.8107 3.5869 0.0458 8 6 4.5792 4.7492 0.1634 9 6 4.1423 5.9338 -0.4173 10 6 4.9008 7.0826 -0.3010 11 6 6.0928 7.0591 0.3974 12 6 6.5380 5.8769 0.9753 13 8 7.7120 5.8535 1.6564 14 6 8.4585 6.9760 1.6282 15 1 8.0771 7.8662 1.1503 16 6 9.7157 6.9873 2.2129 17 7 10.4442 8.0823 2.1850 18 14 10.3754 5.4473 3.0390 19 1 11.1181 4.6316 2.0447 20 1 11.2886 5.8315 4.1452 21 1 9.2441 4.6544 3.5837 22 6 5.7786 4.7212 0.8603 23 6 4.2017 -0.1158 -0.0003 24 6 5.7037 -0.2384 0.0003 25 7 3.4482 -1.1982 0.0046 26 7 2.1667 -1.1420 0.0052 27 1 -0.3634 0.0043 1.0277 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5101 30 1 1.6781 2.1452 0.0004 31 1 2.8434 3.6471 0.0049 32 1 3.2085 5.9566 -0.9594 33 1 4.5594 8.0019 -0.7535 34 1 6.6814 7.9599 0.4903 35 1 11.3238 8.0902 2.5936 36 1 6.1205 3.8018 1.3122 37 1 6.0768 -0.1292 1.0186 38 1 5.9886 -1.2163 -0.3881 39 1 6.1322 0.5414 -0.6293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135606012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:40 Heat of formation + Delta-G solvation = 8.145233 kcal Electronic energy + Delta-G solvation = -24666.269950 eV Core-core repulsion = 20960.786048 eV Total energy + Delta-G solvation = -3705.483903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.64328 -41.45150 -40.42408 -38.41241 -36.10107 -35.36066 -34.69813 -34.43816 -31.49357 -31.06075 -29.90083 -27.90017 -27.27255 -26.33224 -24.43582 -23.69990 -22.85346 -21.81396 -20.00956 -19.60644 -18.82566 -18.60529 -17.07025 -17.03688 -16.83724 -16.82229 -16.55085 -16.06623 -15.89489 -15.64341 -15.44203 -14.83587 -14.44015 -14.38558 -14.33454 -14.26590 -14.14594 -13.57498 -13.39608 -13.32099 -13.10113 -12.90073 -12.77567 -12.51544 -12.15683 -12.04555 -11.61856 -11.46569 -11.42242 -11.23383 -10.89409 -10.64437 -10.54248 -9.43013 -8.96591 -8.51968 -6.23966 -0.91348 -0.29525 0.37783 0.63221 1.27857 1.31881 1.47952 1.54014 1.64156 2.25636 2.36780 2.74572 2.80337 2.94967 3.07404 3.13901 3.23629 3.48355 3.63111 4.02958 4.08452 4.16136 4.33276 4.35663 4.38759 4.53609 4.61254 4.67532 4.74371 4.78338 4.80801 4.83397 5.06552 5.19930 5.29970 5.31758 5.34899 5.36680 5.67085 5.76600 5.88434 6.16504 6.23839 6.83039 6.88779 7.50714 7.58627 8.59426 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.003301 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.789505 B = 8480.638329 C = 9739.843336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.060 3.940 3 C -0.056 4.056 4 C -0.139 4.139 5 C 0.559 3.441 6 O -0.527 6.527 7 N -0.639 5.639 8 C 0.183 3.817 9 C -0.189 4.189 10 C -0.051 4.051 11 C -0.246 4.246 12 C 0.135 3.865 13 O -0.248 6.248 14 C -0.397 4.397 15 H 0.089 0.911 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.263 1.263 21 H -0.269 1.269 22 C -0.202 4.202 23 C 0.107 3.893 24 C -0.109 4.109 25 N -0.269 5.269 26 N -0.253 5.253 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.204 0.796 31 H 0.432 0.568 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.113 0.887 35 H 0.285 0.715 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.132 -11.885 -6.090 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.153 4.153 5 C 0.346 3.654 6 O -0.403 6.403 7 N -0.287 5.287 8 C 0.089 3.911 9 C -0.209 4.209 10 C -0.069 4.069 11 C -0.266 4.266 12 C 0.086 3.914 13 O -0.156 6.156 14 C -0.473 4.473 15 H 0.106 0.894 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.785 3.215 19 H -0.194 1.194 20 H -0.188 1.188 21 H -0.194 1.194 22 C -0.224 4.224 23 C -0.038 4.038 24 C -0.167 4.167 25 N -0.110 5.110 26 N -0.095 5.095 27 H 0.118 0.882 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.221 0.779 31 H 0.273 0.727 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.064 -13.737 -5.918 27.490 hybrid contribution 0.878 1.313 0.486 1.652 sum -22.187 -12.424 -5.432 26.002 Atomic orbital electron populations 1.20907 0.83595 1.05959 1.05268 1.23562 1.01274 0.89063 0.94678 1.23054 0.91567 1.02427 0.91448 1.20859 0.95574 0.93757 1.05140 1.18254 0.87264 0.83476 0.76394 1.90840 1.15209 1.86480 1.47775 1.42993 1.11122 1.02958 1.71583 1.17172 0.91288 0.86774 0.95892 1.20930 1.03876 0.90711 1.05415 1.21037 0.91681 0.99282 0.94939 1.21390 1.00878 0.97652 1.06696 1.19336 0.86263 0.94414 0.91425 1.83527 1.29006 1.38541 1.64481 1.20751 0.98647 0.89193 1.38713 0.89388 1.25164 0.94941 1.00844 0.97480 1.69703 1.12355 1.28602 1.45372 0.85341 0.78474 0.78855 0.78798 1.19441 1.18760 1.19369 1.20092 0.98131 0.96506 1.07624 1.23205 0.99841 0.89093 0.91687 1.20986 0.86643 1.04667 1.04420 1.73053 0.99708 1.26767 1.11448 1.72736 1.01532 1.27067 1.08156 0.88155 0.86683 0.89846 0.77881 0.72689 0.81220 0.82565 0.86910 0.90540 0.86880 0.89888 0.89589 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.19 71.24 0.73 0.26 16 2 C 0.06 0.83 6.86 42.62 0.29 1.12 16 3 C -0.06 -0.65 9.36 22.79 0.21 -0.43 16 4 C -0.14 -2.84 5.92 -19.83 -0.12 -2.96 16 5 C 0.56 14.06 7.51 86.86 0.65 14.71 16 6 O -0.53 -18.20 11.06 -3.79 -0.04 -18.24 16 7 N -0.64 -12.89 5.30 -305.93 -1.62 -14.51 16 8 C 0.18 5.35 6.29 38.16 0.24 5.59 16 9 C -0.19 -4.60 9.96 22.43 0.22 -4.37 16 10 C -0.05 -1.51 10.03 22.23 0.22 -1.29 16 11 C -0.25 -10.29 9.16 22.42 0.21 -10.09 16 12 C 0.14 6.43 6.64 22.56 0.15 6.58 16 13 O -0.25 -13.93 8.58 -22.72 -0.20 -14.12 16 14 C -0.40 -23.60 9.95 67.92 0.68 -22.92 16 15 H 0.09 5.37 5.44 -2.91 -0.02 5.35 16 16 C 0.01 0.85 5.49 84.83 0.47 1.32 16 17 N -0.92 -55.20 13.96 21.61 0.30 -54.89 16 18 Si 0.96 47.08 28.62 68.60 1.96 49.04 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 22 C -0.20 -8.23 8.60 22.52 0.19 -8.03 16 23 C 0.11 2.66 6.91 42.92 0.30 2.95 16 24 C -0.11 -2.74 9.07 71.24 0.65 -2.09 16 25 N -0.27 -7.03 11.42 -46.94 -0.54 -7.57 16 26 N -0.25 -5.68 11.40 -47.69 -0.54 -6.22 16 27 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.11 -0.18 8.09 -2.38 -0.02 -0.20 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.20 0.17 6.62 -2.91 -0.02 0.16 16 31 H 0.43 3.92 7.01 -92.71 -0.65 3.27 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.11 5.17 5.64 -2.91 -0.02 5.16 16 35 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.11 4.96 6.34 -2.91 -0.02 4.95 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.72 5.76 -2.39 -0.01 2.71 16 Total: -1.00 -80.35 335.51 4.89 -75.46 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.47 Total: 10.73 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.09 Total: -19.67 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.40 Total: -83.20 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.24 Total: -32.37 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.96 Total: 49.04 kcal Total: -80.35 4.89 -75.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135606012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.607 kcal (2) G-P(sol) polarization free energy of solvation -80.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds