Wall clock time and date at job start Tue Mar 31 2020 10:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35228 * 107.86953 * 179.87237 * 11 10 9 13 13 C 1.40429 * 107.86501 * 0.38874 * 12 11 10 14 14 N 1.40053 * 125.97327 * 179.78087 * 13 12 11 15 15 C 1.34775 * 120.00653 * 359.97438 * 14 13 12 16 16 O 1.21715 * 119.99533 * 0.02562 * 15 14 13 17 17 C 1.46397 * 120.00500 * 179.97438 * 15 14 13 18 18 C 1.34821 * 120.00106 * 180.02562 * 17 15 14 19 19 C 1.47209 * 120.00058 * 180.02562 * 18 17 15 20 20 C 1.39871 * 120.14170 * 0.02562 * 19 18 17 21 21 C 1.37897 * 119.93887 * 179.97438 * 20 19 18 22 22 C 1.38334 * 120.23199 * 359.97438 * 21 20 19 23 23 C 1.38861 * 120.28740 * 0.02562 * 22 21 20 24 24 O 1.35913 * 119.96975 * 179.97438 * 23 22 21 25 25 C 1.38422 * 120.06070 * 359.74850 * 23 22 21 26 26 N 1.31237 * 108.04636 * 359.76261 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08009 * 126.06460 * 0.02562 * 11 10 9 31 31 H 1.08006 * 126.06788 * 180.11541 * 12 11 10 32 32 H 0.97009 * 119.99788 * 180.02562 * 14 13 12 33 33 H 1.08000 * 119.99730 * 0.02562 * 17 15 14 34 34 H 1.08001 * 119.99654 * 0.02562 * 18 17 15 35 35 H 1.08000 * 120.03495 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.88775 * 180.02562 * 21 20 19 37 37 H 1.07994 * 119.85720 * 180.02562 * 22 21 20 38 38 H 0.96701 * 114.00213 * 90.00211 * 24 23 22 39 39 H 1.07995 * 120.12070 * 180.24976 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5308 13 6 3.8671 -4.9130 -0.6205 14 7 4.9596 -5.4619 -1.3036 15 6 5.5261 -6.6027 -0.8629 16 8 5.0879 -7.1562 0.1286 17 6 6.6677 -7.1767 -1.5773 18 6 7.2340 -8.3182 -1.1367 19 6 8.3823 -8.8951 -1.8547 20 6 8.8887 -8.2612 -2.9941 21 6 9.9648 -8.8050 -3.6632 22 6 10.5466 -9.9759 -3.2113 23 6 10.0517 -10.6131 -2.0812 24 8 10.6279 -11.7634 -1.6432 25 6 8.9748 -10.0752 -1.3976 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5907 -4.7507 1.7301 31 1 3.5588 -6.3457 1.0460 32 1 5.3092 -5.0206 -2.0936 33 1 7.0563 -6.6858 -2.4573 34 1 6.8451 -8.8092 -0.2569 35 1 8.4373 -7.3467 -3.3496 36 1 10.3554 -8.3147 -4.5427 37 1 11.3895 -10.3962 -3.7398 38 1 11.3463 -11.6273 -1.0104 39 1 8.5917 -10.5679 -0.5163 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153809940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:46 Heat of formation + Delta-G solvation = 21.511169 kcal Electronic energy + Delta-G solvation = -23227.136047 eV Core-core repulsion = 19522.231734 eV Total energy + Delta-G solvation = -3704.904312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.30781 -40.86634 -40.44205 -37.92311 -36.46234 -35.53029 -34.80272 -32.76911 -31.49072 -31.04383 -30.17957 -28.25643 -26.00043 -24.83454 -23.66210 -23.13333 -22.27826 -21.31930 -20.57661 -19.24794 -18.86883 -18.51426 -18.09493 -17.32711 -16.97729 -16.60166 -16.37019 -16.08631 -15.79165 -15.62176 -15.44733 -15.06974 -14.76905 -14.44184 -14.16656 -13.94000 -13.73699 -13.65456 -13.44425 -13.22857 -12.87859 -12.61529 -12.35344 -12.04993 -11.95417 -11.69619 -11.50852 -11.34094 -11.02852 -10.99939 -10.69778 -9.86363 -9.76947 -9.38119 -9.15183 -8.78015 -6.56493 -0.58474 0.30501 0.74840 1.10408 1.30402 1.51187 1.57618 1.75207 1.79371 2.29432 2.37650 2.49124 2.78138 3.00713 3.21924 3.50165 3.79475 3.84752 4.02010 4.09312 4.13221 4.22333 4.30050 4.46273 4.55420 4.69413 4.77272 4.80589 4.82052 4.90683 5.02183 5.07031 5.24096 5.40727 5.42493 5.54828 5.57536 5.80606 5.82598 5.91689 6.21427 6.26008 6.40632 6.83738 6.91228 7.05743 7.19277 8.57821 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.001974 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.329346 B =14179.287737 C =14872.633560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.121 2.879 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.343 5.343 11 C 0.055 3.945 12 C -0.292 4.292 13 C 0.267 3.733 14 N -0.619 5.619 15 C 0.552 3.448 16 O -0.556 6.556 17 C -0.203 4.203 18 C -0.006 4.006 19 C -0.071 4.071 20 C -0.113 4.113 21 C -0.105 4.105 22 C -0.138 4.138 23 C 0.092 3.908 24 O -0.512 6.512 25 C -0.133 4.133 26 N -0.344 5.344 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.017 0.983 30 H 0.202 0.798 31 H 0.170 0.830 32 H 0.427 0.573 33 H 0.168 0.832 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.411 0.589 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.705 -20.041 -5.581 30.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.125 5.125 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.012 3.988 14 N -0.268 5.268 15 C 0.343 3.657 16 O -0.435 6.435 17 C -0.223 4.223 18 C -0.026 4.026 19 C -0.071 4.071 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.048 3.952 24 O -0.325 6.325 25 C -0.152 4.152 26 N -0.175 5.175 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.219 0.781 31 H 0.187 0.813 32 H 0.265 0.735 33 H 0.185 0.815 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.270 0.730 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.640 -18.019 -6.076 28.808 hybrid contribution 0.201 -1.958 0.655 2.075 sum 21.841 -19.977 -5.421 30.092 Atomic orbital electron populations 1.70948 1.07446 1.30165 1.47302 1.27299 0.96452 1.06109 0.92064 0.82874 0.74134 0.71053 0.77830 1.20001 1.19653 1.19977 1.22281 0.94685 0.92094 1.56900 0.93630 1.19438 0.86431 0.82803 0.97399 1.48581 1.24057 1.20156 1.19698 1.23188 1.00631 0.88816 0.96687 1.21762 1.02230 1.06555 1.01730 1.19465 0.91753 0.93091 0.94523 1.42475 1.28622 1.25198 1.30476 1.18962 0.83687 0.78899 0.84106 1.90728 1.64229 1.61137 1.27411 1.22720 0.96826 0.99295 1.03460 1.22389 0.90926 0.92770 0.96486 1.18866 0.95978 0.95648 0.96620 1.21790 0.96539 1.00644 0.94100 1.21338 0.95382 0.95183 1.00413 1.21882 1.01282 0.95585 0.96928 1.18498 0.94671 0.87006 0.95012 1.84798 1.54668 1.27411 1.65627 1.21807 0.97199 0.95271 1.00877 1.77273 1.04741 1.18175 1.17343 0.92989 0.92813 0.96501 0.78129 0.81295 0.73502 0.81500 0.85175 0.83127 0.82600 0.83632 0.73016 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.04 13.65 21.45 0.29 -53.75 16 2 C -0.02 -1.10 5.46 84.65 0.46 -0.64 16 3 Si 1.12 49.64 29.90 68.60 2.05 51.69 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.62 -35.51 9.24 25.60 0.24 -35.28 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 13.41 5.57 85.64 0.48 13.88 16 10 N -0.34 -16.32 3.67 -351.84 -1.29 -17.61 16 11 C 0.05 2.19 11.43 83.52 0.95 3.15 16 12 C -0.29 -11.56 9.60 22.11 0.21 -11.35 16 13 C 0.27 10.73 8.10 133.36 1.08 11.82 16 14 N -0.62 -18.56 5.44 -311.37 -1.69 -20.25 16 15 C 0.55 15.17 7.71 86.37 0.67 15.84 16 16 O -0.56 -19.01 13.35 -4.40 -0.06 -19.07 16 17 C -0.20 -3.58 9.41 23.61 0.22 -3.36 16 18 C -0.01 -0.10 9.46 23.84 0.23 0.13 16 19 C -0.07 -1.03 5.87 -20.16 -0.12 -1.15 16 20 C -0.11 -1.27 9.41 22.58 0.21 -1.05 16 21 C -0.11 -0.98 10.02 22.21 0.22 -0.76 16 22 C -0.14 -1.47 9.98 22.44 0.22 -1.25 16 23 C 0.09 1.22 6.70 22.46 0.15 1.37 16 24 O -0.51 -5.97 13.50 -92.58 -1.25 -7.22 16 25 C -0.13 -1.92 9.73 22.68 0.22 -1.70 16 26 N -0.34 -16.22 12.42 -54.50 -0.68 -16.90 16 27 H 0.26 15.11 7.22 -92.71 -0.67 14.44 16 28 H 0.05 2.67 7.94 -2.39 -0.02 2.65 16 29 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 30 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 31 H 0.17 6.44 5.90 -2.91 -0.02 6.42 16 32 H 0.43 9.96 8.80 -92.70 -0.82 9.14 16 33 H 0.17 1.73 6.07 -2.91 -0.02 1.71 16 34 H 0.13 2.45 7.52 -2.91 -0.02 2.42 16 35 H 0.15 1.06 6.16 -2.91 -0.02 1.04 16 36 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 37 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.41 0.83 9.06 -74.06 -0.67 0.16 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -77.41 347.68 2.56 -74.85 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.27 Total: 18.59 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.45 Total: -10.35 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.37 Total: -108.50 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.31 Total: -26.29 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.05 Total: 51.69 kcal Total: -77.41 2.56 -74.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153809940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.363 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds