Wall clock time and date at job start Tue Mar 31 2020 10:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30400 * 125.97339 * 2 1 4 4 N 1.39915 * 109.03390 * 179.97438 * 3 2 1 5 5 C 1.40120 * 125.72868 * 179.73592 * 4 3 2 6 6 C 1.38860 * 120.06639 * 144.75008 * 5 4 3 7 7 C 1.38120 * 119.92894 * 179.69758 * 6 5 4 8 8 C 1.38280 * 120.06747 * 0.60010 * 7 6 5 9 9 C 1.38277 * 120.13820 * 359.67929 * 8 7 6 10 10 C 1.38113 * 120.06934 * 0.02562 * 9 8 7 11 11 C 1.34470 * 108.54057 * 0.02562 * 4 3 2 12 12 C 1.50702 * 126.34806 * 179.97438 * 11 4 3 13 13 C 1.38522 * 107.31119 * 359.97438 * 11 4 3 14 14 C 1.47055 * 126.46794 * 180.02562 * 13 11 4 15 15 O 1.21559 * 119.99676 * 93.23268 * 14 13 11 16 16 C 1.48558 * 120.00141 * 273.23737 * 14 13 11 17 17 O 1.21545 * 119.99921 * 5.45017 * 16 14 13 18 18 N 1.34770 * 119.99987 * 185.44775 * 16 14 13 19 19 C 1.35909 * 119.99998 * 180.02562 * 18 16 14 20 20 H 1.07996 * 119.99909 * 359.97438 * 19 18 16 21 21 C 1.39775 * 119.99997 * 179.97438 * 19 18 16 22 22 N 1.30898 * 120.00459 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00167 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47452 * 89.99474 * 23 21 19 25 25 H 1.48497 * 109.47235 * 210.00154 * 23 21 19 26 26 H 1.48511 * 109.46815 * 329.99830 * 23 21 19 27 27 H 1.09003 * 109.46830 * 85.50439 * 1 2 3 28 28 H 1.09003 * 109.46761 * 205.50331 * 1 2 3 29 29 H 1.08998 * 109.47120 * 325.49943 * 1 2 3 30 30 H 1.07997 * 120.03816 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.96013 * 180.32145 * 7 6 5 32 32 H 1.08003 * 119.92711 * 179.69515 * 8 7 6 33 33 H 1.08000 * 119.96965 * 180.02562 * 9 8 7 34 34 H 1.08005 * 120.03284 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47198 * 90.02220 * 12 11 4 36 36 H 1.08992 * 109.47156 * 210.02672 * 12 11 4 37 37 H 1.08999 * 109.46367 * 330.02359 * 12 11 4 38 38 H 0.97004 * 120.00133 * 359.97438 * 18 16 14 39 39 H 0.96992 * 120.00676 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0553 0.0000 4 7 3.6114 0.6477 0.0006 5 6 4.7256 1.4974 -0.0045 6 6 5.8746 1.1421 0.6897 7 6 6.9734 1.9789 0.6776 8 6 6.9257 3.1751 -0.0145 9 6 5.7809 3.5344 -0.7019 10 6 4.6810 2.6991 -0.6987 11 6 3.6490 -0.6965 0.0004 12 6 4.8873 -1.5555 0.0003 13 6 2.3386 -1.1455 0.0003 14 6 1.8950 -2.5476 0.0006 15 8 1.6549 -3.1088 1.0518 16 6 1.7404 -3.2781 -1.2838 17 8 2.0744 -2.7509 -2.3268 18 7 1.2300 -4.5253 -1.2924 19 6 1.0891 -5.1938 -2.4673 20 1 1.3858 -4.7253 -3.3940 21 6 0.5602 -6.4876 -2.4761 22 7 0.4239 -7.1313 -3.6077 23 14 0.0462 -7.2976 -0.8732 24 1 -1.3784 -6.9844 -0.5947 25 1 0.2171 -8.7685 -0.9849 26 1 0.8917 -6.7837 0.2343 27 1 -0.3633 0.0806 -1.0245 28 1 -0.3633 -0.9276 0.4425 29 1 -0.3633 0.8469 0.5821 30 1 5.9106 0.2105 1.2347 31 1 7.8691 1.7007 1.2130 32 1 7.7845 3.8300 -0.0183 33 1 5.7468 4.4691 -1.2419 34 1 3.7873 2.9801 -1.2361 35 1 5.1856 -1.7630 1.0280 36 1 4.6788 -2.4935 -0.5140 37 1 5.6931 -1.0309 -0.5131 38 1 0.9638 -4.9462 -0.4599 39 1 0.0566 -8.0289 -3.6140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162028036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:56 Heat of formation + Delta-G solvation = 41.091938 kcal Electronic energy + Delta-G solvation = -25031.267203 eV Core-core repulsion = 21327.211977 eV Total energy + Delta-G solvation = -3704.055226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67041 -39.45757 -38.86944 -37.19202 -34.41375 -34.20966 -32.42315 -31.96643 -31.14932 -30.40363 -28.02687 -27.32004 -26.07001 -23.96775 -22.93979 -22.40556 -20.49545 -19.68025 -19.21160 -18.35489 -17.53915 -16.53928 -16.51022 -15.73380 -15.55137 -15.01340 -14.81413 -14.50934 -14.33935 -13.86889 -13.72786 -13.55329 -13.40031 -13.16722 -13.00711 -12.99242 -12.56651 -12.53373 -12.38972 -12.34050 -12.02009 -11.73852 -11.42996 -11.33315 -10.85263 -10.70863 -10.41624 -10.11055 -9.91282 -9.80628 -9.30590 -8.80206 -8.46985 -8.37214 -8.08775 -6.67596 -4.02837 0.69683 1.03151 1.64003 1.96660 2.29258 2.61228 2.97010 3.01197 3.04720 3.43688 3.87990 3.94830 4.11755 4.45543 4.50404 4.60648 4.70500 4.80554 4.92930 5.04855 5.05276 5.19622 5.31212 5.36234 5.39354 5.46209 5.64858 5.73234 5.76376 5.80462 5.86021 5.95486 6.00287 6.03946 6.15859 6.19288 6.47634 6.62035 7.12840 7.17218 7.57141 7.68577 7.91813 8.32286 8.67771 9.13101 9.64068 10.42079 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.003231 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.720021 B = 8664.597005 C = 8961.238454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.127 3.873 3 N -0.296 5.296 4 N -0.319 5.319 5 C 0.160 3.840 6 C -0.134 4.134 7 C -0.099 4.099 8 C -0.126 4.126 9 C -0.101 4.101 10 C -0.110 4.110 11 C 0.132 3.868 12 C -0.101 4.101 13 C -0.264 4.264 14 C 0.429 3.571 15 O -0.456 6.456 16 C 0.376 3.624 17 O -0.564 6.564 18 N -0.527 5.527 19 C -0.301 4.301 20 H 0.129 0.871 21 C 0.051 3.949 22 N -0.841 5.841 23 Si 0.875 3.125 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.259 1.259 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.381 0.619 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.604 15.534 9.521 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 N -0.115 5.115 4 N -0.093 5.093 5 C 0.068 3.932 6 C -0.154 4.154 7 C -0.118 4.118 8 C -0.144 4.144 9 C -0.120 4.120 10 C -0.129 4.129 11 C 0.006 3.994 12 C -0.160 4.160 13 C -0.276 4.276 14 C 0.302 3.698 15 O -0.328 6.328 16 C 0.164 3.836 17 O -0.450 6.450 18 N -0.166 5.166 19 C -0.430 4.430 20 H 0.146 0.854 21 C -0.158 4.158 22 N -0.478 5.478 23 Si 0.699 3.301 24 H -0.187 1.187 25 H -0.194 1.194 26 H -0.184 1.184 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.215 0.785 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.712 16.718 9.297 21.453 hybrid contribution -0.465 -1.619 0.939 1.929 sum 9.248 15.098 10.236 20.451 Atomic orbital electron populations 1.20295 0.85780 1.03624 1.03895 1.22383 0.96895 0.88681 0.96107 1.77078 0.84943 1.22184 1.27305 1.45264 1.04397 1.03200 1.56421 1.17500 0.85029 0.91707 0.98952 1.21169 0.92766 1.01645 0.99842 1.20999 0.97756 0.93971 0.99057 1.21245 0.98345 0.96954 0.97902 1.21075 0.92512 0.99434 0.98952 1.21056 0.99850 0.93317 0.98724 1.21389 0.96209 0.83584 0.98234 1.20726 0.92435 0.99327 1.03464 1.20166 0.92072 0.95185 1.20170 1.21901 0.72936 0.85761 0.89210 1.90533 1.38011 1.68755 1.35524 1.19414 0.90237 0.84036 0.89929 1.90648 1.54798 1.67365 1.32172 1.42026 1.51597 1.13387 1.09552 1.19651 1.38766 0.97216 0.87396 0.85373 1.25310 0.96415 0.96189 0.97871 1.69386 1.39491 1.13039 1.25884 0.86684 0.80406 0.80235 0.82729 1.18735 1.19391 1.18367 0.89420 0.90217 0.90305 0.84869 0.84998 0.85445 0.85090 0.84754 0.89576 0.88717 0.90042 0.78484 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.31 36.01 0.37 -0.74 16 2 C 0.13 2.26 7.27 -81.94 -0.60 1.67 16 3 N -0.30 -5.19 12.23 33.94 0.42 -4.77 16 4 N -0.32 -5.23 3.70 -6.42 -0.02 -5.25 16 5 C 0.16 2.15 6.25 -83.61 -0.52 1.62 16 6 C -0.13 -1.43 8.25 -39.39 -0.33 -1.76 16 7 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.13 -0.99 10.04 -39.55 -0.40 -1.38 16 9 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 10 C -0.11 -1.31 9.75 -39.40 -0.38 -1.69 16 11 C 0.13 2.26 6.85 -81.33 -0.56 1.70 16 12 C -0.10 -1.37 8.42 36.01 0.30 -1.07 16 13 C -0.26 -5.10 5.45 -104.96 -0.57 -5.67 16 14 C 0.43 9.04 6.29 -31.75 -0.20 8.84 16 15 O -0.46 -9.70 17.24 5.31 0.09 -9.61 16 16 C 0.38 9.15 7.78 -12.01 -0.09 9.06 16 17 O -0.56 -15.41 16.22 5.33 0.09 -15.32 16 18 N -0.53 -13.03 5.05 -11.67 -0.06 -13.09 16 19 C -0.30 -8.21 10.16 -15.17 -0.15 -8.37 16 20 H 0.13 3.93 7.36 -52.49 -0.39 3.55 16 21 C 0.05 1.34 5.51 -17.38 -0.10 1.24 16 22 N -0.84 -22.80 13.93 55.54 0.77 -22.03 16 23 Si 0.88 18.65 27.74 -169.99 -4.72 13.93 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.30 6.53 56.52 0.37 -4.93 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.13 7.90 -51.93 -0.41 0.72 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.13 1.29 6.10 -52.49 -0.32 0.97 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.09 0.94 7.73 -51.93 -0.40 0.54 16 36 H 0.09 1.42 7.98 -51.93 -0.41 1.01 16 37 H 0.08 0.94 6.87 -51.93 -0.36 0.59 16 38 H 0.38 8.69 5.23 -40.82 -0.21 8.48 16 39 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -32.75 345.26 -6.45 -39.21 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.21 Total: 10.80 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -4.02 Total: 0.93 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.11 Total: -45.14 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.18 Total: -24.93 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.72 Total: 13.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.75 -6.45 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162028036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.298 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds