Wall clock time and date at job start Tue Mar 31 2020 10:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30400 * 125.97339 * 2 1 4 4 N 1.39915 * 109.03390 * 179.97438 * 3 2 1 5 5 C 1.40120 * 125.72868 * 179.73592 * 4 3 2 6 6 C 1.38860 * 120.06639 * 144.75008 * 5 4 3 7 7 C 1.38120 * 119.92894 * 179.69758 * 6 5 4 8 8 C 1.38280 * 120.06747 * 0.60010 * 7 6 5 9 9 C 1.38277 * 120.13820 * 359.67929 * 8 7 6 10 10 C 1.38113 * 120.06934 * 0.02562 * 9 8 7 11 11 C 1.34470 * 108.54057 * 0.02562 * 4 3 2 12 12 C 1.50702 * 126.34806 * 179.97438 * 11 4 3 13 13 C 1.38522 * 107.31119 * 359.97438 * 11 4 3 14 14 C 1.47055 * 126.46794 * 180.02562 * 13 11 4 15 15 O 1.21559 * 119.99676 * 93.23268 * 14 13 11 16 16 C 1.48558 * 120.00141 * 273.23737 * 14 13 11 17 17 O 1.21545 * 119.99921 * 5.45017 * 16 14 13 18 18 N 1.34770 * 119.99987 * 185.44775 * 16 14 13 19 19 C 1.35909 * 119.99998 * 180.02562 * 18 16 14 20 20 H 1.07996 * 119.99909 * 359.97438 * 19 18 16 21 21 C 1.39775 * 119.99997 * 179.97438 * 19 18 16 22 22 N 1.30898 * 120.00459 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00167 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47452 * 89.99474 * 23 21 19 25 25 H 1.48497 * 109.47235 * 210.00154 * 23 21 19 26 26 H 1.48511 * 109.46815 * 329.99830 * 23 21 19 27 27 H 1.09003 * 109.46830 * 85.50439 * 1 2 3 28 28 H 1.09003 * 109.46761 * 205.50331 * 1 2 3 29 29 H 1.08998 * 109.47120 * 325.49943 * 1 2 3 30 30 H 1.07997 * 120.03816 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.96013 * 180.32145 * 7 6 5 32 32 H 1.08003 * 119.92711 * 179.69515 * 8 7 6 33 33 H 1.08000 * 119.96965 * 180.02562 * 9 8 7 34 34 H 1.08005 * 120.03284 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47198 * 90.02220 * 12 11 4 36 36 H 1.08992 * 109.47156 * 210.02672 * 12 11 4 37 37 H 1.08999 * 109.46367 * 330.02359 * 12 11 4 38 38 H 0.97004 * 120.00133 * 359.97438 * 18 16 14 39 39 H 0.96992 * 120.00676 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0553 0.0000 4 7 3.6114 0.6477 0.0006 5 6 4.7256 1.4974 -0.0045 6 6 5.8746 1.1421 0.6897 7 6 6.9734 1.9789 0.6776 8 6 6.9257 3.1751 -0.0145 9 6 5.7809 3.5344 -0.7019 10 6 4.6810 2.6991 -0.6987 11 6 3.6490 -0.6965 0.0004 12 6 4.8873 -1.5555 0.0003 13 6 2.3386 -1.1455 0.0003 14 6 1.8950 -2.5476 0.0006 15 8 1.6549 -3.1088 1.0518 16 6 1.7404 -3.2781 -1.2838 17 8 2.0744 -2.7509 -2.3268 18 7 1.2300 -4.5253 -1.2924 19 6 1.0891 -5.1938 -2.4673 20 1 1.3858 -4.7253 -3.3940 21 6 0.5602 -6.4876 -2.4761 22 7 0.4239 -7.1313 -3.6077 23 14 0.0462 -7.2976 -0.8732 24 1 -1.3784 -6.9844 -0.5947 25 1 0.2171 -8.7685 -0.9849 26 1 0.8917 -6.7837 0.2343 27 1 -0.3633 0.0806 -1.0245 28 1 -0.3633 -0.9276 0.4425 29 1 -0.3633 0.8469 0.5821 30 1 5.9106 0.2105 1.2347 31 1 7.8691 1.7007 1.2130 32 1 7.7845 3.8300 -0.0183 33 1 5.7468 4.4691 -1.2419 34 1 3.7873 2.9801 -1.2361 35 1 5.1856 -1.7630 1.0280 36 1 4.6788 -2.4935 -0.5140 37 1 5.6931 -1.0309 -0.5131 38 1 0.9638 -4.9462 -0.4599 39 1 0.0566 -8.0289 -3.6140 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162028036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:55 Heat of formation + Delta-G solvation = 19.920638 kcal Electronic energy + Delta-G solvation = -25032.185260 eV Core-core repulsion = 21327.211977 eV Total energy + Delta-G solvation = -3704.973283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.92712 -41.06616 -39.93505 -39.06873 -36.33652 -35.42788 -34.06176 -33.51929 -31.95399 -31.41454 -29.37704 -28.42447 -27.92681 -25.50708 -23.77562 -23.53430 -21.98947 -21.19593 -20.81098 -19.96737 -18.72675 -18.36225 -17.46045 -17.19877 -16.82029 -16.68370 -16.21366 -15.78605 -15.55687 -15.18414 -14.97616 -14.91542 -14.65720 -14.56284 -14.47717 -14.33625 -14.08444 -13.88377 -13.54330 -13.33192 -13.15975 -13.09097 -12.65780 -12.58398 -12.45763 -12.17787 -11.99857 -11.78686 -11.71744 -10.96243 -10.49826 -10.32735 -10.05039 -9.97699 -9.25410 -8.66305 -6.16285 -0.23381 -0.10560 0.29891 0.82662 1.14099 1.24656 1.28542 1.31135 1.39038 2.05678 2.08344 2.34965 2.68173 3.02125 3.31756 3.35033 3.62457 3.71320 3.86795 3.91173 4.10354 4.13862 4.20075 4.39214 4.40407 4.41590 4.53328 4.58660 4.62138 4.74686 4.84057 4.88825 4.98654 5.20738 5.23080 5.33462 5.40266 5.47496 5.67882 5.72868 5.87908 6.07596 6.33957 6.40681 6.63417 7.09478 7.65494 8.47974 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.003231 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.720021 B = 8664.597005 C = 8961.238454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 N -0.312 5.312 4 N -0.312 5.312 5 C 0.113 3.887 6 C -0.137 4.137 7 C -0.094 4.094 8 C -0.113 4.113 9 C -0.101 4.101 10 C -0.128 4.128 11 C 0.136 3.864 12 C -0.101 4.101 13 C -0.312 4.312 14 C 0.455 3.545 15 O -0.451 6.451 16 C 0.378 3.622 17 O -0.597 6.597 18 N -0.527 5.527 19 C -0.335 4.335 20 H 0.076 0.924 21 C 0.012 3.988 22 N -0.884 5.884 23 Si 0.947 3.053 24 H -0.249 1.249 25 H -0.255 1.255 26 H -0.244 1.244 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.392 0.608 39 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 16.708 12.274 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.131 5.131 4 N -0.086 5.086 5 C 0.024 3.976 6 C -0.157 4.157 7 C -0.112 4.112 8 C -0.131 4.131 9 C -0.119 4.119 10 C -0.147 4.147 11 C 0.008 3.992 12 C -0.159 4.159 13 C -0.324 4.324 14 C 0.327 3.673 15 O -0.323 6.323 16 C 0.166 3.834 17 O -0.484 6.484 18 N -0.166 5.166 19 C -0.464 4.464 20 H 0.094 0.906 21 C -0.194 4.194 22 N -0.521 5.521 23 Si 0.765 3.235 24 H -0.173 1.173 25 H -0.179 1.179 26 H -0.168 1.168 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.174 0.826 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.228 0.772 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.700 17.907 12.046 24.549 hybrid contribution -0.863 -1.726 0.043 1.931 sum 10.837 16.181 12.088 22.921 Atomic orbital electron populations 1.20404 0.84053 1.04682 1.04451 1.22828 0.98235 0.88172 0.95934 1.77010 0.85850 1.22385 1.27900 1.45506 1.04736 1.03348 1.54993 1.17985 0.85203 0.92534 1.01920 1.21396 0.92395 1.02480 0.99422 1.21451 0.97897 0.93416 0.98438 1.21736 0.98685 0.96935 0.95707 1.21407 0.91857 0.99741 0.98885 1.21129 1.00612 0.93711 0.99297 1.21868 0.96577 0.84384 0.96383 1.20876 0.91585 0.97942 1.05456 1.20112 0.93731 0.94181 1.24409 1.21407 0.72153 0.86317 0.87376 1.90519 1.37719 1.69111 1.34949 1.20172 0.88555 0.83779 0.90942 1.90618 1.55581 1.68185 1.34033 1.41868 1.52078 1.13507 1.09143 1.19215 1.41891 0.98589 0.86708 0.90618 1.26172 0.95252 0.95878 1.02086 1.69490 1.40195 1.13913 1.28521 0.85617 0.80671 0.79527 0.77645 1.17294 1.17900 1.16801 0.89287 0.90315 0.87804 0.84053 0.81590 0.81814 0.82632 0.86415 0.86451 0.90603 0.87981 0.77165 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.24 10.31 71.24 0.73 -1.51 16 2 C 0.12 4.18 7.27 43.59 0.32 4.50 16 3 N -0.31 -11.11 12.23 -46.53 -0.57 -11.68 16 4 N -0.31 -10.26 3.70 -174.22 -0.64 -10.90 16 5 C 0.11 2.96 6.25 38.11 0.24 3.20 16 6 C -0.14 -2.59 8.25 22.39 0.18 -2.40 16 7 C -0.09 -1.16 10.04 22.25 0.22 -0.94 16 8 C -0.11 -1.27 10.04 22.29 0.22 -1.04 16 9 C -0.10 -1.53 10.04 22.25 0.22 -1.30 16 10 C -0.13 -2.96 9.75 22.39 0.22 -2.74 16 11 C 0.14 4.66 6.85 42.22 0.29 4.95 16 12 C -0.10 -2.63 8.42 71.24 0.60 -2.03 16 13 C -0.31 -12.23 5.45 -20.08 -0.11 -12.34 16 14 C 0.46 19.37 6.29 27.34 0.17 19.54 16 15 O -0.45 -18.86 17.24 -3.90 -0.07 -18.93 16 16 C 0.38 19.00 7.78 87.00 0.68 19.68 16 17 O -0.60 -34.33 16.22 -3.86 -0.06 -34.39 16 18 N -0.53 -26.68 5.05 -309.11 -1.56 -28.25 16 19 C -0.33 -19.21 10.16 84.43 0.86 -18.35 16 20 H 0.08 5.05 7.36 -2.91 -0.02 5.02 16 21 C 0.01 0.65 5.51 85.20 0.47 1.12 16 22 N -0.88 -49.46 13.93 21.80 0.30 -49.15 16 23 Si 0.95 37.91 27.74 68.60 1.90 39.81 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 26 H -0.24 -9.12 6.53 99.48 0.65 -8.47 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.08 2.25 7.90 -2.39 -0.02 2.23 16 29 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.14 2.35 6.10 -2.91 -0.02 2.33 16 31 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.12 2.29 7.73 -2.39 -0.02 2.28 16 36 H 0.08 2.28 7.98 -2.39 -0.02 2.26 16 37 H 0.10 2.20 6.87 -2.39 -0.02 2.19 16 38 H 0.39 17.76 5.23 -92.71 -0.48 17.28 16 39 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 Total: -1.00 -76.04 345.26 5.19 -70.85 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.57 Total: 32.32 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.32 Total: 10.32 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.47 Total: -99.98 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.13 Total: -53.32 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -76.04 5.19 -70.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162028036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.773 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds