Wall clock time and date at job start Tue Mar 31 2020 10:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99782 * 2 1 4 4 H 1.48504 * 109.47032 * 271.03888 * 3 2 1 5 5 H 1.48500 * 109.47293 * 31.04059 * 3 2 1 6 6 H 1.48501 * 109.46995 * 151.04053 * 3 2 1 7 7 C 1.37878 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99625 * 358.32731 * 7 2 1 9 9 C 1.50701 * 120.00287 * 178.33774 * 7 2 1 10 10 C 1.52998 * 115.55448 * 86.88001 * 9 7 2 11 11 O 1.45202 * 109.46509 * 65.21735 * 10 9 7 12 12 C 1.34686 * 116.99865 * 175.15157 * 11 10 9 13 13 O 1.21433 * 119.99574 * 5.09405 * 12 11 10 14 14 C 1.48060 * 120.00233 * 185.09471 * 12 11 10 15 15 C 1.39272 * 119.69111 * 185.22850 * 14 12 11 16 16 C 1.38710 * 119.18900 * 179.97438 * 15 14 12 17 17 C 1.38410 * 118.55406 * 359.73149 * 16 15 14 18 18 C 1.39286 * 119.30771 * 0.53297 * 17 16 15 19 19 N 1.39816 * 119.61883 * 179.72916 * 18 17 16 20 20 C 1.35845 * 126.10229 * 175.45199 * 19 18 17 21 21 C 1.35284 * 107.60766 * 179.70615 * 20 19 18 22 22 C 1.39953 * 107.97062 * 0.43542 * 21 20 19 23 23 N 1.30815 * 108.36991 * 359.55479 * 22 21 20 24 24 N 1.31960 * 120.76604 * 359.45395 * 18 17 16 25 25 C 1.52994 * 117.49636 * 232.55686 * 9 7 2 26 26 C 1.53005 * 117.49403 * 301.21301 * 9 7 2 27 27 H 0.97000 * 120.00571 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47148 * 305.21937 * 10 9 7 29 29 H 1.08997 * 109.47355 * 185.21186 * 10 9 7 30 30 H 1.08001 * 120.40407 * 359.95655 * 15 14 12 31 31 H 1.07996 * 120.72447 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.34740 * 180.26211 * 17 16 15 33 33 H 1.07992 * 126.19637 * 359.94640 * 20 19 18 34 34 H 1.08000 * 126.00977 * 180.25496 * 21 20 19 35 35 H 1.08001 * 125.81420 * 179.82848 * 22 21 20 36 36 H 1.09000 * 117.49735 * 215.00123 * 25 9 7 37 37 H 1.09004 * 117.50255 * 0.02562 * 25 9 7 38 38 H 1.09005 * 117.49818 * 359.97438 * 26 9 7 39 39 H 1.08999 * 117.49686 * 144.97497 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4745 2.0592 -1.3999 5 1 1.4577 2.6463 0.7219 6 1 3.5574 1.4340 0.6779 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1291 0.0264 9 6 3.5111 -1.1942 -0.0384 10 6 4.2055 -1.0998 1.3217 11 8 3.9157 -2.2930 2.0968 12 6 4.5357 -2.4150 3.2861 13 8 5.2246 -1.5081 3.7076 14 6 4.3775 -3.6549 4.0798 15 6 4.9306 -3.7327 5.3556 16 6 4.7756 -4.8990 6.0902 17 6 4.0678 -5.9466 5.5268 18 6 3.5453 -5.8043 4.2435 19 7 2.8342 -6.8604 3.6659 20 6 2.1974 -6.8352 2.4662 21 6 1.6402 -8.0527 2.2730 22 6 1.9345 -8.8443 3.3890 23 7 2.6516 -8.1337 4.2209 24 7 3.7091 -4.6822 3.5686 25 6 4.1903 -2.0345 -1.1216 26 6 4.1879 -0.5074 -1.2263 27 1 -0.4851 0.8400 0.0004 28 1 3.8410 -0.2223 1.8556 29 1 5.2821 -1.0147 1.1748 30 1 5.4738 -2.8952 5.7678 31 1 5.1939 -4.9861 7.0820 32 1 3.9260 -6.8664 6.0747 33 1 2.1485 -5.9965 1.7877 34 1 1.0664 -8.3588 1.4107 35 1 1.6262 -9.8689 3.5360 36 1 5.1319 -2.5202 -0.8652 37 1 3.5476 -2.5868 -1.8071 38 1 3.5435 -0.0558 -1.9806 39 1 5.1277 0.0120 -1.0388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174747130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:00 Heat of formation + Delta-G solvation = 59.408792 kcal Electronic energy + Delta-G solvation = -24955.888156 eV Core-core repulsion = 21252.627208 eV Total energy + Delta-G solvation = -3703.260948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64742 -41.79059 -40.67082 -38.84840 -37.17272 -34.79561 -34.27565 -33.95414 -31.41737 -30.75878 -29.16534 -27.55064 -26.06441 -25.22001 -23.42908 -22.96166 -22.04430 -21.50459 -21.07322 -19.53670 -19.10440 -18.60168 -17.64985 -17.51294 -17.14307 -16.91375 -16.79208 -16.52035 -15.79650 -15.52527 -15.05441 -14.77966 -14.75750 -14.48748 -14.29724 -14.05548 -13.95752 -13.71349 -13.36180 -13.08203 -12.79799 -12.34028 -12.15374 -12.02226 -11.95817 -11.75643 -11.63450 -11.62239 -11.18316 -10.97916 -10.95204 -10.67382 -10.41741 -10.28333 -9.45411 -8.31538 -6.39154 -0.79633 -0.31533 0.86619 0.96812 1.30199 1.32339 1.35299 1.44082 1.49632 1.80382 2.33507 2.55939 2.81639 3.01157 3.17788 3.32923 3.67280 3.73247 3.80637 3.92126 4.04750 4.08699 4.18181 4.22109 4.28299 4.34908 4.47610 4.53804 4.67792 4.79397 4.84000 4.87806 4.97539 5.03707 5.14156 5.20595 5.37080 5.41938 5.57637 5.63452 5.89955 6.11866 6.28496 6.53260 6.68467 6.74824 7.29369 8.84451 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003999 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.048515 B = 7000.645399 C = 8082.411160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.020 3.980 3 Si 0.935 3.065 4 H -0.257 1.257 5 H -0.296 1.296 6 H -0.239 1.239 7 C -0.480 4.480 8 H 0.029 0.971 9 C -0.039 4.039 10 C 0.109 3.891 11 O -0.329 6.329 12 C 0.511 3.489 13 O -0.518 6.518 14 C 0.104 3.896 15 C -0.110 4.110 16 C -0.034 4.034 17 C -0.130 4.130 18 C 0.348 3.652 19 N -0.344 5.344 20 C 0.053 3.947 21 C -0.256 4.256 22 C 0.076 3.924 23 N -0.306 5.306 24 N -0.492 5.492 25 C -0.156 4.156 26 C -0.174 4.174 27 H 0.266 0.734 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.210 0.790 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.044 -14.628 11.277 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.182 1.182 5 H -0.223 1.223 6 H -0.162 1.162 7 C -0.518 4.518 8 H 0.048 0.952 9 C -0.040 4.040 10 C 0.035 3.965 11 O -0.243 6.243 12 C 0.355 3.645 13 O -0.408 6.408 14 C -0.032 4.032 15 C -0.131 4.131 16 C -0.059 4.059 17 C -0.152 4.152 18 C 0.117 3.883 19 N -0.123 5.123 20 C -0.088 4.088 21 C -0.284 4.284 22 C -0.113 4.113 23 N -0.125 5.125 24 N -0.208 5.208 25 C -0.193 4.193 26 C -0.211 4.211 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.194 0.806 31 H 0.227 0.773 32 H 0.193 0.807 33 H 0.186 0.814 34 H 0.198 0.802 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.368 -14.011 11.623 21.462 hybrid contribution -0.652 1.077 -0.577 1.385 sum 10.716 -12.934 11.046 20.103 Atomic orbital electron populations 1.70037 1.08309 1.28094 1.52268 1.25847 0.95304 1.02843 0.93707 0.85949 0.79949 0.78533 0.79656 1.18207 1.22329 1.16172 1.20306 0.88690 0.92696 1.50088 0.95249 1.19207 0.93189 1.05195 0.86402 1.22986 0.98539 0.83807 0.91120 1.86745 1.63064 1.44928 1.29541 1.21254 0.76257 0.86370 0.80595 1.90780 1.38694 1.40352 1.71013 1.19787 0.99594 0.89953 0.93882 1.22441 0.97849 1.01332 0.91497 1.22087 0.93332 0.88930 1.01594 1.22241 0.97442 1.02869 0.92609 1.18011 0.94112 0.85322 0.90869 1.45958 1.41096 1.09507 1.15725 1.23209 0.95596 1.01238 0.88711 1.22050 1.09926 0.92779 1.03618 1.24889 0.93941 1.01551 0.90884 1.77331 1.23569 0.88359 1.23216 1.66594 1.16114 0.99927 1.38125 1.22845 1.01463 0.92754 1.02229 1.23089 1.01834 0.95917 1.00254 0.92487 0.92868 0.90696 0.80639 0.77337 0.80746 0.81352 0.80165 0.74666 0.88072 0.89856 0.89511 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.02 1.20 5.47 84.66 0.46 1.66 16 3 Si 0.94 44.30 24.88 68.60 1.71 46.00 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.24 -10.35 5.75 99.48 0.57 -9.78 16 7 C -0.48 -27.96 9.36 25.60 0.24 -27.72 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C -0.04 -1.82 1.06 -52.93 -0.06 -1.88 16 10 C 0.11 4.79 4.93 71.98 0.36 5.15 16 11 O -0.33 -14.80 9.98 -55.95 -0.56 -15.36 16 12 C 0.51 19.84 7.94 70.43 0.56 20.40 16 13 O -0.52 -20.26 16.11 20.05 0.32 -19.94 16 14 C 0.10 3.35 6.74 41.86 0.28 3.63 16 15 C -0.11 -2.38 9.63 22.63 0.22 -2.16 16 16 C -0.03 -0.50 10.16 22.42 0.23 -0.27 16 17 C -0.13 -2.57 9.70 22.56 0.22 -2.35 16 18 C 0.35 10.07 7.55 132.95 1.00 11.07 16 19 N -0.34 -9.95 3.81 -192.18 -0.73 -10.68 16 20 C 0.05 1.53 11.10 83.39 0.93 2.46 16 21 C -0.26 -5.49 10.80 22.00 0.24 -5.25 16 22 C 0.08 1.40 12.02 85.26 1.02 2.42 16 23 N -0.31 -7.41 11.84 -56.98 -0.67 -8.09 16 24 N -0.49 -16.93 9.62 -181.95 -1.75 -18.68 16 25 C -0.16 -6.15 9.96 30.62 0.30 -5.85 16 26 C -0.17 -6.83 7.62 30.62 0.23 -6.60 16 27 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.05 2.47 6.63 -2.39 -0.02 2.46 16 29 H 0.07 2.85 8.05 -2.39 -0.02 2.83 16 30 H 0.18 3.10 7.64 -2.91 -0.02 3.08 16 31 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.18 2.72 7.69 -2.91 -0.02 2.70 16 33 H 0.17 5.38 8.05 -2.91 -0.02 5.35 16 34 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 38 H 0.09 3.56 7.29 -2.38 -0.02 3.54 16 39 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -78.65 344.50 5.79 -72.86 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.94 Total: 18.86 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 6.24 Total: -5.28 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.86 Total: -97.14 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.24 Total: -35.30 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.71 Total: 46.00 kcal Total: -78.65 5.79 -72.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174747130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.264 kcal (2) G-P(sol) polarization free energy of solvation -78.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds