Wall clock time and date at job start Tue Mar 31 2020 10:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48507 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47478 * 300.00628 * 3 2 1 6 6 H 1.48506 * 109.46831 * 60.00936 * 3 2 1 7 7 C 1.37878 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00273 * 184.54718 * 7 2 1 9 9 C 1.50701 * 119.99912 * 4.53938 * 7 2 1 10 10 C 1.52995 * 115.55233 * 324.41495 * 9 7 2 11 11 O 1.45198 * 109.47296 * 305.74918 * 10 9 7 12 12 C 1.34737 * 117.00265 * 175.03712 * 11 10 9 13 13 O 1.21488 * 119.99901 * 5.05661 * 12 11 10 14 14 C 1.47532 * 119.99695 * 185.05674 * 12 11 10 15 15 C 1.40290 * 120.49767 * 184.76401 * 14 12 11 16 16 C 1.38006 * 118.35107 * 179.73213 * 15 14 12 17 17 C 1.39176 * 119.26019 * 0.54255 * 16 15 14 18 18 N 1.39469 * 119.52197 * 179.69548 * 17 16 15 19 19 C 1.37231 * 126.49828 * 184.73460 * 18 17 16 20 20 C 1.34585 * 106.82675 * 179.84504 * 19 18 17 21 21 N 1.34174 * 108.23319 * 0.42328 * 20 19 18 22 22 C 1.30445 * 109.38980 * 359.73459 * 21 20 19 23 23 N 1.32441 * 120.95249 * 359.71998 * 17 16 15 24 24 C 1.31628 * 121.80906 * 359.97438 * 23 17 16 25 25 C 1.53005 * 117.49573 * 110.08455 * 9 7 2 26 26 C 1.53002 * 117.49750 * 178.74191 * 9 7 2 27 27 H 0.96999 * 120.00358 * 4.99171 * 1 2 3 28 28 H 1.08997 * 109.47257 * 185.74726 * 10 9 7 29 29 H 1.09006 * 109.46899 * 65.74747 * 10 9 7 30 30 H 1.07997 * 120.82785 * 359.97438 * 15 14 12 31 31 H 1.07995 * 120.37106 * 180.23638 * 16 15 14 32 32 H 1.08008 * 126.58677 * 359.97438 * 19 18 17 33 33 H 1.08000 * 125.88170 * 180.11820 * 20 19 18 34 34 H 1.08006 * 125.73020 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.68574 * 180.02562 * 24 23 17 36 36 H 1.09003 * 117.49166 * 215.00165 * 25 9 7 37 37 H 1.08996 * 117.49734 * 0.02562 * 25 9 7 38 38 H 1.08997 * 117.50213 * 359.97438 * 26 9 7 39 39 H 1.09001 * 117.49486 * 144.97710 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2123 6 1 1.8904 2.3964 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0820 -1.1955 0.0736 9 6 1.2547 -2.4971 -0.1044 10 6 -0.0994 -2.5377 0.6066 11 8 0.0720 -2.1541 1.9965 12 6 -1.0448 -2.0385 2.7414 13 8 -2.1231 -2.3407 2.2704 14 6 -0.9580 -1.5450 4.1290 15 6 -2.0978 -1.5142 4.9463 16 6 -1.9650 -1.0493 6.2389 17 6 -0.7180 -0.6189 6.6823 18 7 -0.5790 -0.1420 7.9855 19 6 0.5536 0.3992 8.5402 20 6 0.2472 0.7281 9.8087 21 7 -1.0321 0.3913 10.0325 22 6 -1.5383 -0.1306 8.9494 23 7 0.3385 -0.6553 5.8844 24 6 0.2584 -1.0965 4.6469 25 6 1.3936 -3.2902 -1.4054 26 6 2.0785 -3.7861 -0.1294 27 1 -0.4850 0.8368 -0.0731 28 1 -0.5062 -3.5476 0.5560 29 1 -0.7860 -1.8446 0.1204 30 1 -3.0546 -1.8498 4.5745 31 1 -2.8203 -1.0151 6.8974 32 1 1.5070 0.5369 8.0517 33 1 0.9173 1.1803 10.5249 34 1 -2.5495 -0.4932 8.8371 35 1 1.1421 -1.1114 4.0261 36 1 0.5201 -3.8410 -1.7547 37 1 2.0276 -2.8698 -2.1859 38 1 3.1628 -3.6918 -0.0712 39 1 1.6558 -4.6630 0.3611 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191387272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:47 Heat of formation + Delta-G solvation = 57.076808 kcal Electronic energy + Delta-G solvation = -24907.059482 eV Core-core repulsion = 21203.697411 eV Total energy + Delta-G solvation = -3703.362070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.58742 -40.48466 -39.14075 -36.83818 -35.14018 -34.45141 -32.90431 -32.27368 -30.65766 -29.60599 -26.77368 -25.57686 -24.77659 -24.09182 -21.91157 -21.33646 -21.10401 -20.54577 -19.26668 -19.05861 -17.47237 -17.02661 -16.37152 -16.00911 -15.52491 -15.47575 -15.35535 -14.68957 -14.33808 -14.13239 -14.01919 -13.89720 -13.75387 -13.36226 -13.18998 -12.88880 -12.13301 -12.06612 -11.63726 -11.14737 -10.94847 -10.84885 -10.58479 -10.44242 -10.43585 -10.30821 -10.24618 -9.91443 -9.64943 -9.47140 -9.05430 -9.03926 -8.85830 -8.70756 -8.34324 -6.10471 -4.22341 0.14741 0.91529 1.84025 2.16473 2.83774 2.94905 3.19067 3.29305 3.31027 3.32533 3.73549 4.00198 4.21781 4.27723 4.38142 4.58189 4.67290 4.83823 4.93817 5.16353 5.21365 5.28359 5.38687 5.42459 5.62089 5.82965 5.94541 5.99401 6.13703 6.17865 6.38371 6.41820 6.52714 6.56273 6.70647 6.83710 6.87503 7.15855 7.33917 7.41041 7.48104 7.70789 7.81099 8.22194 8.46804 8.76555 9.40550 10.85626 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003533 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.416619 B = 7924.396062 C = 8765.987319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.478 4.478 8 H 0.064 0.936 9 C 0.043 3.957 10 C 0.121 3.879 11 O -0.314 6.314 12 C 0.510 3.490 13 O -0.518 6.518 14 C -0.169 4.169 15 C 0.009 3.991 16 C -0.194 4.194 17 C 0.362 3.638 18 N -0.411 5.411 19 C -0.020 4.020 20 C -0.034 4.034 21 N -0.479 5.479 22 C 0.193 3.807 23 N -0.504 5.504 24 C 0.198 3.802 25 C -0.194 4.194 26 C -0.209 4.209 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.120 0.880 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.213 0.787 35 H 0.190 0.810 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -1.691 12.644 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.129 4.129 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.515 4.515 8 H 0.082 0.918 9 C 0.043 3.957 10 C 0.049 3.951 11 O -0.228 6.228 12 C 0.354 3.646 13 O -0.410 6.410 14 C -0.173 4.173 15 C -0.017 4.017 16 C -0.216 4.216 17 C 0.134 3.866 18 N -0.093 5.093 19 C -0.150 4.150 20 C -0.178 4.178 21 N -0.196 5.196 22 C -0.088 4.088 23 N -0.216 5.216 24 C 0.039 3.961 25 C -0.233 4.233 26 C -0.246 4.246 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.138 0.862 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.201 0.799 33 H 0.194 0.806 34 H 0.229 0.771 35 H 0.207 0.793 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.097 -1.261 13.553 13.960 hybrid contribution 0.049 0.438 -1.330 1.401 sum -3.048 -0.823 12.223 12.625 Atomic orbital electron populations 1.69780 1.05924 1.26754 1.49890 1.24936 0.94827 0.99178 0.93930 0.86482 0.80196 0.83329 0.77743 1.19576 1.20870 1.20914 1.20531 0.92793 0.88434 1.49723 0.91825 1.18949 0.92207 0.90739 0.93830 1.22961 0.99614 0.96802 0.75750 1.86464 1.32559 1.78000 1.25757 1.20434 0.83374 0.75188 0.85639 1.90766 1.29807 1.47253 1.73181 1.20452 0.95845 1.06585 0.94388 1.21608 0.98936 0.90254 0.90861 1.21434 0.96739 1.05618 0.97782 1.18429 0.90723 0.93231 0.84266 1.43144 1.12411 1.45377 1.08417 1.23042 0.92622 1.03691 0.95620 1.22407 0.93529 1.06437 0.95407 1.70319 1.09598 1.15090 1.24599 1.25370 0.96397 1.04049 0.83010 1.67137 1.30193 1.18455 1.05826 1.23264 0.97811 0.86568 0.88432 1.22996 1.01793 1.06032 0.92432 1.22966 0.98807 0.99783 1.03025 0.92770 0.95860 0.86239 0.82290 0.83300 0.79865 0.80619 0.77095 0.79271 0.91368 0.89728 0.90255 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.14 10.17 55.43 0.56 -22.58 16 2 C 0.07 1.87 5.36 -17.82 -0.10 1.77 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.48 -12.17 8.79 -34.44 -0.30 -12.47 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.04 1.01 2.21 -155.66 -0.34 0.67 16 10 C 0.12 2.82 4.38 37.16 0.16 2.98 16 11 O -0.31 -6.91 9.02 -40.59 -0.37 -7.28 16 12 C 0.51 10.12 7.89 34.52 0.27 10.39 16 13 O -0.52 -11.15 16.20 -19.26 -0.31 -11.47 16 14 C -0.17 -2.67 5.89 -104.83 -0.62 -3.29 16 15 C 0.01 0.12 9.70 -38.90 -0.38 -0.26 16 16 C -0.19 -2.04 9.48 -39.32 -0.37 -2.42 16 17 C 0.36 4.59 7.49 -154.51 -1.16 3.43 16 18 N -0.41 -4.87 2.98 -63.80 -0.19 -5.06 16 19 C -0.02 -0.23 11.16 -16.43 -0.18 -0.42 16 20 C -0.03 -0.37 11.85 -17.82 -0.21 -0.58 16 21 N -0.48 -5.86 11.24 -14.45 -0.16 -6.02 16 22 C 0.19 2.01 11.88 -89.54 -1.06 0.95 16 23 N -0.50 -7.31 9.86 -11.98 -0.12 -7.43 16 24 C 0.20 3.02 10.78 -17.13 -0.18 2.84 16 25 C -0.19 -4.08 9.96 -26.69 -0.27 -4.35 16 26 C -0.21 -4.26 9.92 -26.69 -0.26 -4.52 16 27 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 28 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.12 3.08 5.88 -51.93 -0.31 2.78 16 30 H 0.16 1.75 7.74 -52.49 -0.41 1.35 16 31 H 0.15 1.00 6.75 -52.49 -0.35 0.64 16 32 H 0.18 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.21 1.33 7.05 -52.48 -0.37 0.96 16 35 H 0.19 2.94 7.62 -52.49 -0.40 2.54 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -30.02 345.03 -9.75 -39.77 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.34 Total: 5.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -5.01 Total: -5.28 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.09 Total: -41.09 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.68 Total: -18.74 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.02 -9.75 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191387272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.847 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds