Wall clock time and date at job start Tue Mar 31 2020 10:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48507 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47478 * 300.00628 * 3 2 1 6 6 H 1.48506 * 109.46831 * 60.00936 * 3 2 1 7 7 C 1.37878 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00273 * 184.54718 * 7 2 1 9 9 C 1.50701 * 119.99912 * 4.53938 * 7 2 1 10 10 C 1.52995 * 115.55233 * 324.41495 * 9 7 2 11 11 O 1.45198 * 109.47296 * 305.74918 * 10 9 7 12 12 C 1.34737 * 117.00265 * 175.03712 * 11 10 9 13 13 O 1.21488 * 119.99901 * 5.05661 * 12 11 10 14 14 C 1.47532 * 119.99695 * 185.05674 * 12 11 10 15 15 C 1.40290 * 120.49767 * 184.76401 * 14 12 11 16 16 C 1.38006 * 118.35107 * 179.73213 * 15 14 12 17 17 C 1.39176 * 119.26019 * 0.54255 * 16 15 14 18 18 N 1.39469 * 119.52197 * 179.69548 * 17 16 15 19 19 C 1.37231 * 126.49828 * 184.73460 * 18 17 16 20 20 C 1.34585 * 106.82675 * 179.84504 * 19 18 17 21 21 N 1.34174 * 108.23319 * 0.42328 * 20 19 18 22 22 C 1.30445 * 109.38980 * 359.73459 * 21 20 19 23 23 N 1.32441 * 120.95249 * 359.71998 * 17 16 15 24 24 C 1.31628 * 121.80906 * 359.97438 * 23 17 16 25 25 C 1.53005 * 117.49573 * 110.08455 * 9 7 2 26 26 C 1.53002 * 117.49750 * 178.74191 * 9 7 2 27 27 H 0.96999 * 120.00358 * 4.99171 * 1 2 3 28 28 H 1.08997 * 109.47257 * 185.74726 * 10 9 7 29 29 H 1.09006 * 109.46899 * 65.74747 * 10 9 7 30 30 H 1.07997 * 120.82785 * 359.97438 * 15 14 12 31 31 H 1.07995 * 120.37106 * 180.23638 * 16 15 14 32 32 H 1.08008 * 126.58677 * 359.97438 * 19 18 17 33 33 H 1.08000 * 125.88170 * 180.11820 * 20 19 18 34 34 H 1.08006 * 125.73020 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.68574 * 180.02562 * 24 23 17 36 36 H 1.09003 * 117.49166 * 215.00165 * 25 9 7 37 37 H 1.08996 * 117.49734 * 0.02562 * 25 9 7 38 38 H 1.08997 * 117.50213 * 359.97438 * 26 9 7 39 39 H 1.09001 * 117.49486 * 144.97710 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2123 6 1 1.8904 2.3964 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0820 -1.1955 0.0736 9 6 1.2547 -2.4971 -0.1044 10 6 -0.0994 -2.5377 0.6066 11 8 0.0720 -2.1541 1.9965 12 6 -1.0448 -2.0385 2.7414 13 8 -2.1231 -2.3407 2.2704 14 6 -0.9580 -1.5450 4.1290 15 6 -2.0978 -1.5142 4.9463 16 6 -1.9650 -1.0493 6.2389 17 6 -0.7180 -0.6189 6.6823 18 7 -0.5790 -0.1420 7.9855 19 6 0.5536 0.3992 8.5402 20 6 0.2472 0.7281 9.8087 21 7 -1.0321 0.3913 10.0325 22 6 -1.5383 -0.1306 8.9494 23 7 0.3385 -0.6553 5.8844 24 6 0.2584 -1.0965 4.6469 25 6 1.3936 -3.2902 -1.4054 26 6 2.0785 -3.7861 -0.1294 27 1 -0.4850 0.8368 -0.0731 28 1 -0.5062 -3.5476 0.5560 29 1 -0.7860 -1.8446 0.1204 30 1 -3.0546 -1.8498 4.5745 31 1 -2.8203 -1.0151 6.8974 32 1 1.5070 0.5369 8.0517 33 1 0.9173 1.1803 10.5249 34 1 -2.5495 -0.4932 8.8371 35 1 1.1421 -1.1114 4.0261 36 1 0.5201 -3.8410 -1.7547 37 1 2.0276 -2.8698 -2.1859 38 1 3.1628 -3.6918 -0.0712 39 1 1.6558 -4.6630 0.3611 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191387272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:46 Heat of formation + Delta-G solvation = 43.761617 kcal Electronic energy + Delta-G solvation = -24907.636872 eV Core-core repulsion = 21203.697411 eV Total energy + Delta-G solvation = -3703.939460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.45505 -41.69246 -40.56486 -38.53713 -36.79341 -35.43431 -34.19140 -33.94352 -31.69668 -30.48179 -28.41869 -27.44190 -25.97594 -25.11297 -23.11566 -22.86410 -21.99466 -21.76155 -21.08271 -19.96029 -18.89287 -18.63438 -17.76014 -17.25578 -16.97145 -16.84771 -16.47127 -16.33229 -15.68508 -15.19272 -15.01509 -14.94534 -14.84528 -14.71548 -14.33247 -14.04531 -13.81715 -13.64056 -13.41546 -12.97812 -12.69837 -12.33878 -12.12273 -11.93796 -11.87530 -11.47556 -11.30034 -11.25999 -11.23234 -10.95940 -10.85221 -10.68673 -10.17030 -10.00899 -9.60036 -8.02148 -6.19493 -0.92581 -0.08326 0.87402 1.25768 1.39331 1.44689 1.53494 1.60379 1.88452 2.03376 2.41320 2.57428 2.98666 3.04680 3.35572 3.51961 3.59020 3.60788 3.71542 3.89311 4.03757 4.25423 4.34370 4.40334 4.43435 4.51504 4.59054 4.69489 4.75344 4.85177 4.93412 5.01988 5.04849 5.12585 5.20502 5.46194 5.53452 5.59583 5.76429 5.85908 5.97475 6.33306 6.45599 6.76769 6.86330 6.91689 7.44576 8.91283 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003533 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.416619 B = 7924.396062 C = 8765.987319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.036 3.964 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.491 4.491 8 H 0.056 0.944 9 C 0.006 3.994 10 C 0.130 3.870 11 O -0.327 6.327 12 C 0.507 3.493 13 O -0.543 6.543 14 C -0.191 4.191 15 C 0.018 3.982 16 C -0.171 4.171 17 C 0.361 3.639 18 N -0.420 5.420 19 C -0.042 4.042 20 C -0.034 4.034 21 N -0.508 5.508 22 C 0.204 3.796 23 N -0.521 5.521 24 C 0.193 3.807 25 C -0.187 4.187 26 C -0.188 4.188 27 H 0.258 0.742 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.199 0.801 32 H 0.186 0.814 33 H 0.197 0.803 34 H 0.254 0.746 35 H 0.176 0.824 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -1.829 14.335 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.164 4.164 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.005 3.995 10 C 0.057 3.943 11 O -0.241 6.241 12 C 0.353 3.647 13 O -0.436 6.436 14 C -0.195 4.195 15 C -0.008 4.008 16 C -0.192 4.192 17 C 0.132 3.868 18 N -0.103 5.103 19 C -0.171 4.171 20 C -0.177 4.177 21 N -0.225 5.225 22 C -0.077 4.077 23 N -0.233 5.233 24 C 0.035 3.965 25 C -0.225 4.225 26 C -0.225 4.225 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.194 0.806 31 H 0.216 0.784 32 H 0.203 0.797 33 H 0.213 0.787 34 H 0.270 0.730 35 H 0.193 0.807 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.916 -1.396 15.264 15.820 hybrid contribution 0.292 0.475 -1.716 1.804 sum -3.624 -0.921 13.548 14.055 Atomic orbital electron populations 1.69941 1.06775 1.26838 1.50727 1.25500 0.95430 1.01528 0.93932 0.85674 0.79344 0.80287 0.77366 1.19140 1.20767 1.21191 1.20733 0.92604 0.89805 1.49733 0.92592 1.19075 0.92995 0.91341 0.96056 1.22670 0.98976 0.96264 0.76417 1.86465 1.33902 1.78446 1.25331 1.21083 0.82484 0.74352 0.86790 1.90731 1.30247 1.48581 1.74029 1.20301 0.97555 1.08931 0.92743 1.21843 0.98343 0.89464 0.91105 1.21850 0.97248 1.02886 0.97221 1.18757 0.91091 0.92551 0.84371 1.43286 1.12988 1.45766 1.08236 1.23229 0.93068 1.04674 0.96083 1.22794 0.93605 1.05690 0.95590 1.70359 1.10186 1.16372 1.25605 1.26265 0.97379 1.02162 0.81908 1.67078 1.31567 1.19086 1.05588 1.22981 0.97360 0.87313 0.88854 1.23010 1.02315 1.05154 0.91988 1.22979 0.98828 0.98639 1.02100 0.93231 0.95093 0.89175 0.80599 0.78405 0.79705 0.78651 0.73027 0.80726 0.89879 0.89802 0.89774 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.46 10.17 21.45 0.22 -48.24 16 2 C 0.04 1.86 5.36 84.66 0.45 2.31 16 3 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.49 -25.40 8.79 25.60 0.22 -25.18 16 8 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 9 C 0.01 0.27 2.21 -52.93 -0.12 0.15 16 10 C 0.13 6.16 4.38 71.98 0.32 6.48 16 11 O -0.33 -14.85 9.02 -56.48 -0.51 -15.36 16 12 C 0.51 20.57 7.89 70.27 0.55 21.12 16 13 O -0.54 -23.75 16.20 19.87 0.32 -23.43 16 14 C -0.19 -6.03 5.89 -20.00 -0.12 -6.15 16 15 C 0.02 0.41 9.70 22.71 0.22 0.63 16 16 C -0.17 -2.97 9.48 22.44 0.21 -2.76 16 17 C 0.36 8.33 7.49 132.90 1.00 9.33 16 18 N -0.42 -8.89 2.98 -355.77 -1.06 -9.95 16 19 C -0.04 -0.91 11.16 83.01 0.93 0.02 16 20 C -0.03 -0.68 11.85 83.50 0.99 0.31 16 21 N -0.51 -11.11 11.24 -199.64 -2.24 -13.35 16 22 C 0.20 3.52 11.88 179.97 2.14 5.66 16 23 N -0.52 -14.82 9.86 -191.81 -1.89 -16.71 16 24 C 0.19 6.01 10.78 85.05 0.92 6.93 16 25 C -0.19 -7.70 9.96 30.62 0.30 -7.40 16 26 C -0.19 -7.50 9.92 30.62 0.30 -7.19 16 27 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16 28 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 29 H 0.09 4.82 5.88 -2.38 -0.01 4.80 16 30 H 0.18 3.41 7.74 -2.91 -0.02 3.39 16 31 H 0.20 1.44 6.75 -2.91 -0.02 1.42 16 32 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.25 1.78 7.05 -2.91 -0.02 1.76 16 35 H 0.18 5.78 7.62 -2.91 -0.02 5.76 16 36 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -66.03 345.03 6.27 -59.76 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.08 Total: 19.26 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 8.32 Total: 4.25 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -4.98 Total: -88.25 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.19 Total: -38.78 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.03 6.27 -59.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191387272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.518 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds