Wall clock time and date at job start Tue Mar 31 2020 11:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30973 * 126.43265 * 2 1 4 4 C 1.35239 * 105.58118 * 179.97438 * 3 2 1 5 5 C 1.48328 * 126.42146 * 180.02562 * 4 3 2 6 6 C 1.39400 * 120.06603 * 359.72198 * 5 4 3 7 7 C 1.37872 * 119.94126 * 179.74216 * 6 5 4 8 8 C 1.38866 * 120.05666 * 0.51457 * 7 6 5 9 9 O 1.35834 * 119.93015 * 179.73936 * 8 7 6 10 10 C 1.42893 * 117.00481 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47579 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.47018 * 305.00280 * 11 10 9 13 13 C 1.47196 * 109.47458 * 64.99765 * 11 10 9 14 14 N 9.63895 * 166.62537 * 93.61543 * 3 1 2 15 15 C 1.53004 * 109.47525 * 185.00156 * 11 10 9 16 16 C 1.50699 * 109.46972 * 174.99874 * 15 11 10 17 17 H 1.07996 * 120.00504 * 0.02562 * 16 15 11 18 18 C 1.37877 * 119.99326 * 179.97438 * 16 15 11 19 19 N 1.31521 * 119.99895 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00465 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47300 * 89.99941 * 20 18 16 22 22 H 1.48500 * 109.47474 * 210.00105 * 20 18 16 23 23 H 1.48497 * 109.47040 * 330.00253 * 20 18 16 24 24 C 1.38857 * 120.13245 * 359.76555 * 8 7 6 25 25 C 1.37875 * 120.06343 * 359.97438 * 24 8 7 26 26 N 1.30807 * 107.15660 * 359.97438 * 4 3 2 27 27 O 1.21291 * 110.09579 * 359.74826 * 26 4 3 28 28 H 1.09001 * 109.46953 * 90.00029 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99627 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00258 * 1 2 3 31 31 H 1.08010 * 120.02804 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.97102 * 180.25530 * 7 6 5 33 33 H 1.09003 * 109.47007 * 300.00061 * 10 9 8 34 34 H 1.09009 * 109.47048 * 59.99715 * 10 9 8 35 35 H 1.09000 * 109.46376 * 294.99769 * 15 11 10 36 36 H 1.08997 * 109.46765 * 54.99345 * 15 11 10 37 37 H 0.96993 * 120.00435 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.97375 * 179.97438 * 24 8 7 39 39 H 1.07999 * 120.03298 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2849 1.0537 0.0000 4 6 3.5487 0.5724 0.0006 5 6 4.7965 1.3743 0.0014 6 6 4.7318 2.7668 -0.0043 7 6 5.8932 3.5097 0.0018 8 6 7.1268 2.8719 0.0028 9 8 8.2695 3.6063 0.0035 10 6 8.1269 5.0281 0.0036 11 6 9.5112 5.6796 0.0050 12 1 10.0902 5.3007 0.8473 13 6 10.2062 5.3581 -1.2521 14 7 10.7416 5.1087 -2.2252 15 6 9.3608 7.1970 0.1310 16 6 10.7235 7.8282 0.2559 17 1 11.6084 7.2092 0.2460 18 6 10.8405 9.1962 0.3818 19 7 12.0298 9.7473 0.4903 20 14 9.3102 10.2672 0.3968 21 1 8.8328 10.4290 1.7936 22 1 9.6329 11.5998 -0.1735 23 1 8.2481 9.6242 -0.4178 24 6 7.1945 1.4850 0.0026 25 6 6.0363 0.7370 0.0019 26 7 3.4644 -0.7330 0.0015 27 8 2.3009 -1.0754 0.0065 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.7726 3.2633 -0.0089 32 1 5.8437 4.5885 0.0016 33 1 7.5798 5.3385 -0.8866 34 1 7.5789 5.3382 0.8935 35 1 8.8595 7.5871 -0.7548 36 1 8.7693 7.4312 1.0161 37 1 12.1123 10.7096 0.5785 38 1 8.1552 0.9916 0.0029 39 1 6.0895 -0.3417 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270056887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:11 Heat of formation + Delta-G solvation = 74.366367 kcal Electronic energy + Delta-G solvation = -23570.455320 eV Core-core repulsion = 19867.842981 eV Total energy + Delta-G solvation = -3702.612339 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.82593 -40.35056 -38.15918 -36.44446 -35.91516 -34.03151 -33.79196 -32.16910 -31.36153 -30.28554 -29.12636 -27.85183 -24.86167 -24.50155 -23.07326 -22.44856 -21.60009 -21.08845 -18.47751 -18.43428 -17.87531 -17.33735 -17.05703 -16.28285 -15.92696 -15.37053 -14.96447 -14.64116 -14.42685 -13.95866 -13.85302 -13.76255 -13.57171 -13.47487 -13.22693 -12.90810 -12.61658 -12.51527 -12.31604 -12.25981 -12.04906 -11.65006 -11.47827 -11.38476 -11.20516 -10.95795 -10.78243 -10.53406 -10.28792 -10.20335 -9.92084 -9.44986 -9.29165 -8.69928 -8.26448 -6.18423 -4.20673 0.48563 1.05380 1.11915 2.20578 2.46571 3.01523 3.19880 3.20830 3.28214 3.29631 3.48542 3.54077 3.58099 3.66764 4.30482 4.49343 4.51896 4.60610 4.67202 4.74915 4.77138 4.98115 5.06149 5.10094 5.15292 5.23427 5.24468 5.31287 5.43832 5.50883 5.57586 5.78351 5.91082 6.03100 6.07527 6.14099 6.20673 6.44827 6.74641 6.95133 7.24218 7.51737 7.84509 8.27797 8.33593 8.84324 9.39848 10.94344 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.002269 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.476979 B =12339.406845 C =13230.622399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.178 3.822 3 N -0.480 5.480 4 C 0.229 3.771 5 C -0.079 4.079 6 C -0.030 4.030 7 C -0.215 4.215 8 C 0.164 3.836 9 O -0.307 6.307 10 C 0.060 3.940 11 C 0.023 3.977 12 H 0.120 0.880 13 C 0.239 3.761 14 N -0.458 5.458 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.157 4.157 25 C -0.041 4.041 26 N -0.384 5.384 27 O 0.075 5.925 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.140 0.860 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.005 -18.860 2.133 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.042 4.042 3 N -0.214 5.214 4 C -0.040 4.040 5 C -0.081 4.081 6 C -0.050 4.050 7 C -0.233 4.233 8 C 0.116 3.884 9 O -0.219 6.219 10 C -0.016 4.016 11 C 0.001 3.999 12 H 0.138 0.862 13 C -0.078 4.078 14 N -0.134 5.134 15 C -0.041 4.041 16 C -0.569 4.569 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.176 4.176 25 C -0.061 4.061 26 N -0.092 5.092 27 O 0.017 5.983 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.158 0.842 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.116 -19.228 0.677 30.075 hybrid contribution -1.125 0.974 0.395 1.539 sum -24.241 -18.254 1.073 30.364 Atomic orbital electron populations 1.20410 0.80136 1.05957 1.05502 1.28788 0.98927 0.80716 0.95788 1.71993 0.99957 1.28682 1.20738 1.23870 0.92884 0.87302 0.99954 1.17176 0.87527 0.91991 1.11428 1.20941 0.98718 0.91742 0.93560 1.21306 0.91457 1.01160 1.09401 1.19267 0.85514 0.91452 0.92121 1.86142 1.28745 1.19957 1.87101 1.23182 0.98622 0.76814 1.02975 1.19015 0.91487 0.99474 0.89927 0.86221 1.28847 0.93262 0.91485 0.94238 1.81138 1.09342 1.10752 1.12169 1.19638 0.99754 0.86524 0.98151 1.20938 0.91318 0.92753 1.51898 0.90563 1.24982 0.95954 0.97938 0.94155 1.69894 1.22605 1.11483 1.49072 0.86821 0.83710 0.80238 0.78822 1.19902 1.21177 1.18847 1.20368 0.99344 0.90654 1.07235 1.20905 0.90120 1.00108 0.94977 1.74901 0.96975 1.15046 1.22251 1.85270 1.11437 1.35709 1.65915 0.87985 0.88364 0.87649 0.84548 0.84137 0.91035 0.89565 0.95320 0.94410 0.92405 0.84244 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.14 10.51 36.01 0.38 0.24 16 2 C 0.18 1.38 8.50 -12.99 -0.11 1.27 16 3 N -0.48 -5.16 11.25 -9.87 -0.11 -5.27 16 4 C 0.23 2.77 7.80 -156.10 -1.22 1.55 16 5 C -0.08 -0.94 5.88 -104.88 -0.62 -1.56 16 6 C -0.03 -0.33 9.69 -39.28 -0.38 -0.71 16 7 C -0.21 -2.41 9.02 -39.48 -0.36 -2.77 16 8 C 0.16 2.07 6.69 -39.12 -0.26 1.81 16 9 O -0.31 -4.30 9.87 -19.22 -0.19 -4.49 16 10 C 0.06 0.79 4.09 37.16 0.15 0.95 16 11 C 0.02 0.38 2.45 -93.41 -0.23 0.15 16 12 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 13 C 0.24 4.83 13.72 -20.68 -0.28 4.54 16 14 N -0.46 -10.21 18.55 42.25 0.78 -9.42 16 15 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 16 C -0.53 -13.85 9.15 -34.44 -0.32 -14.16 16 17 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 20 Si 0.88 19.91 27.47 -169.99 -4.67 15.24 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 24 C -0.16 -1.84 9.97 -39.49 -0.39 -2.23 16 25 C -0.04 -0.46 9.69 -39.28 -0.38 -0.85 16 26 N -0.38 -4.56 11.85 30.98 0.37 -4.20 16 27 O 0.08 0.72 11.29 18.04 0.20 0.92 16 28 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.14 1.36 7.87 -52.48 -0.41 0.95 16 32 H 0.14 1.34 6.28 -52.49 -0.33 1.01 16 33 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 34 H 0.09 0.93 7.66 -51.92 -0.40 0.53 16 35 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 36 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.13 1.36 7.86 -52.49 -0.41 0.95 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -33.66 349.97 -6.19 -39.84 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.41 Total: -2.29 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -4.21 Total: -10.02 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 1.81 Total: -44.49 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: 0.01 Total: -3.56 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.66 -6.19 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270056887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.210 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds