Wall clock time and date at job start Tue Mar 31 2020 11:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30973 * 126.43265 * 2 1 4 4 C 1.35239 * 105.58118 * 179.97438 * 3 2 1 5 5 C 1.48328 * 126.42146 * 180.02562 * 4 3 2 6 6 C 1.39400 * 120.06603 * 359.72198 * 5 4 3 7 7 C 1.37872 * 119.94126 * 179.74216 * 6 5 4 8 8 C 1.38866 * 120.05666 * 0.51457 * 7 6 5 9 9 O 1.35834 * 119.93015 * 179.73936 * 8 7 6 10 10 C 1.42893 * 117.00481 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47579 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.47018 * 305.00280 * 11 10 9 13 13 C 1.47196 * 109.47458 * 64.99765 * 11 10 9 14 14 N 9.63895 * 166.62537 * 93.61543 * 3 1 2 15 15 C 1.53004 * 109.47525 * 185.00156 * 11 10 9 16 16 C 1.50699 * 109.46972 * 174.99874 * 15 11 10 17 17 H 1.07996 * 120.00504 * 0.02562 * 16 15 11 18 18 C 1.37877 * 119.99326 * 179.97438 * 16 15 11 19 19 N 1.31521 * 119.99895 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00465 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47300 * 89.99941 * 20 18 16 22 22 H 1.48500 * 109.47474 * 210.00105 * 20 18 16 23 23 H 1.48497 * 109.47040 * 330.00253 * 20 18 16 24 24 C 1.38857 * 120.13245 * 359.76555 * 8 7 6 25 25 C 1.37875 * 120.06343 * 359.97438 * 24 8 7 26 26 N 1.30807 * 107.15660 * 359.97438 * 4 3 2 27 27 O 1.21291 * 110.09579 * 359.74826 * 26 4 3 28 28 H 1.09001 * 109.46953 * 90.00029 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99627 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00258 * 1 2 3 31 31 H 1.08010 * 120.02804 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.97102 * 180.25530 * 7 6 5 33 33 H 1.09003 * 109.47007 * 300.00061 * 10 9 8 34 34 H 1.09009 * 109.47048 * 59.99715 * 10 9 8 35 35 H 1.09000 * 109.46376 * 294.99769 * 15 11 10 36 36 H 1.08997 * 109.46765 * 54.99345 * 15 11 10 37 37 H 0.96993 * 120.00435 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.97375 * 179.97438 * 24 8 7 39 39 H 1.07999 * 120.03298 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2849 1.0537 0.0000 4 6 3.5487 0.5724 0.0006 5 6 4.7965 1.3743 0.0014 6 6 4.7318 2.7668 -0.0043 7 6 5.8932 3.5097 0.0018 8 6 7.1268 2.8719 0.0028 9 8 8.2695 3.6063 0.0035 10 6 8.1269 5.0281 0.0036 11 6 9.5112 5.6796 0.0050 12 1 10.0902 5.3007 0.8473 13 6 10.2062 5.3581 -1.2521 14 7 10.7416 5.1087 -2.2252 15 6 9.3608 7.1970 0.1310 16 6 10.7235 7.8282 0.2559 17 1 11.6084 7.2092 0.2460 18 6 10.8405 9.1962 0.3818 19 7 12.0298 9.7473 0.4903 20 14 9.3102 10.2672 0.3968 21 1 8.8328 10.4290 1.7936 22 1 9.6329 11.5998 -0.1735 23 1 8.2481 9.6242 -0.4178 24 6 7.1945 1.4850 0.0026 25 6 6.0363 0.7370 0.0019 26 7 3.4644 -0.7330 0.0015 27 8 2.3009 -1.0754 0.0065 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.7726 3.2633 -0.0089 32 1 5.8437 4.5885 0.0016 33 1 7.5798 5.3385 -0.8866 34 1 7.5789 5.3382 0.8935 35 1 8.8595 7.5871 -0.7548 36 1 8.7693 7.4312 1.0161 37 1 12.1123 10.7096 0.5785 38 1 8.1552 0.9916 0.0029 39 1 6.0895 -0.3417 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270056887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:10 Heat of formation + Delta-G solvation = 52.245868 kcal Electronic energy + Delta-G solvation = -23571.414536 eV Core-core repulsion = 19867.842981 eV Total energy + Delta-G solvation = -3703.571556 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.57406 -41.28332 -39.17189 -37.83015 -36.73935 -35.62272 -34.57810 -33.93226 -32.23097 -31.15792 -29.62781 -29.37086 -25.96405 -25.48020 -23.90071 -23.56641 -23.09433 -21.88623 -19.36452 -19.22670 -18.94285 -18.69857 -18.62124 -17.24741 -16.85563 -16.44232 -16.24305 -15.60680 -15.48844 -15.12616 -15.02096 -14.50304 -14.42358 -14.25166 -14.16101 -14.12097 -13.96452 -13.87309 -13.32876 -13.18783 -13.12594 -12.95071 -12.76217 -12.54940 -12.23474 -12.18780 -11.87528 -11.84712 -11.81555 -11.64189 -11.33786 -11.02268 -10.72767 -10.13424 -9.15543 -8.24369 -6.31341 -0.33548 0.27004 0.38496 1.39077 1.44898 1.48062 1.57659 1.81414 1.92487 1.93428 2.12303 2.41968 2.51816 2.71820 2.96710 3.06503 3.15159 3.71330 3.81315 3.90305 4.04732 4.13900 4.17069 4.35012 4.42013 4.47244 4.51645 4.62305 4.64310 4.68336 4.70693 4.91602 4.96464 5.12987 5.16746 5.18311 5.28019 5.37412 5.38323 5.56791 5.62743 6.22894 6.33546 6.70334 6.78631 7.13923 7.33071 8.92401 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.002269 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.476979 B =12339.406845 C =13230.622399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.192 3.808 3 N -0.506 5.506 4 C 0.212 3.788 5 C -0.089 4.089 6 C -0.031 4.031 7 C -0.209 4.209 8 C 0.148 3.852 9 O -0.324 6.324 10 C 0.065 3.935 11 C 0.026 3.974 12 H 0.127 0.873 13 C 0.249 3.751 14 N -0.505 5.505 15 C 0.000 4.000 16 C -0.534 4.534 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.954 5.954 20 Si 0.950 3.050 21 H -0.256 1.256 22 H -0.298 1.298 23 H -0.231 1.231 24 C -0.163 4.163 25 C -0.044 4.044 26 N -0.406 5.406 27 O 0.074 5.926 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.265 0.735 38 H 0.145 0.855 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.304 -19.015 2.735 35.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 N -0.240 5.240 4 C -0.057 4.057 5 C -0.091 4.091 6 C -0.051 4.051 7 C -0.227 4.227 8 C 0.101 3.899 9 O -0.237 6.237 10 C -0.010 4.010 11 C 0.005 3.995 12 H 0.144 0.856 13 C -0.067 4.067 14 N -0.182 5.182 15 C -0.039 4.039 16 C -0.572 4.572 17 H 0.047 0.953 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.772 3.228 21 H -0.180 1.180 22 H -0.225 1.225 23 H -0.154 1.154 24 C -0.182 4.182 25 C -0.064 4.064 26 N -0.115 5.115 27 O 0.015 5.985 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.449 -19.418 1.283 33.648 hybrid contribution 0.199 0.883 0.210 0.930 sum -27.250 -18.535 1.493 32.990 Atomic orbital electron populations 1.20805 0.76160 1.07691 1.07236 1.29859 1.00517 0.79452 0.92901 1.71989 0.99746 1.29831 1.22413 1.24029 0.93533 0.87562 1.00620 1.17416 0.87800 0.92655 1.11246 1.21084 0.99284 0.91441 0.93272 1.21510 0.90678 1.02219 1.08338 1.19394 0.85594 0.91574 0.93353 1.86085 1.29690 1.20229 1.87712 1.23135 0.95872 0.76618 1.05415 1.19082 0.93868 0.98200 0.88385 0.85563 1.29634 0.92324 0.90286 0.94478 1.81132 1.10917 1.12248 1.13907 1.19579 0.96469 0.87963 0.99875 1.21330 0.92915 0.92599 1.50341 0.95310 1.26075 0.99594 0.99884 0.93969 1.70091 1.25792 1.11761 1.51772 0.85675 0.79736 0.77272 0.80112 1.18025 1.22489 1.15377 1.20503 0.99739 0.90794 1.07140 1.20972 0.90000 1.00431 0.95027 1.74878 0.98259 1.15238 1.23131 1.85231 1.11062 1.36200 1.65991 0.85950 0.85825 0.86604 0.83442 0.81959 0.89723 0.85978 0.94540 0.90807 0.92632 0.83732 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.07 10.51 71.24 0.75 0.68 16 2 C 0.19 2.61 8.50 88.36 0.75 3.36 16 3 N -0.51 -10.18 11.25 -302.42 -3.40 -13.59 16 4 C 0.21 4.97 7.80 137.25 1.07 6.04 16 5 C -0.09 -2.05 5.88 -20.03 -0.12 -2.16 16 6 C -0.03 -0.63 9.69 22.46 0.22 -0.41 16 7 C -0.21 -4.12 9.02 22.33 0.20 -3.92 16 8 C 0.15 3.45 6.69 22.57 0.15 3.60 16 9 O -0.32 -8.39 9.87 -91.69 -0.90 -9.30 16 10 C 0.06 1.49 4.09 71.98 0.29 1.79 16 11 C 0.03 0.84 2.45 -12.60 -0.03 0.80 16 12 H 0.13 3.90 8.14 -2.38 -0.02 3.88 16 13 C 0.25 9.99 13.72 89.41 1.23 11.21 16 14 N -0.50 -22.82 18.55 20.03 0.37 -22.45 16 15 C 0.00 -0.01 3.49 29.85 0.10 0.09 16 16 C -0.53 -27.90 9.15 25.60 0.23 -27.67 16 17 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 18 C 0.00 0.08 5.47 84.65 0.46 0.55 16 19 N -0.95 -58.14 13.96 21.45 0.30 -57.84 16 20 Si 0.95 39.70 27.47 68.60 1.88 41.58 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.23 -8.37 6.54 99.48 0.65 -7.72 16 24 C -0.16 -3.69 9.97 22.33 0.22 -3.46 16 25 C -0.04 -0.98 9.69 22.46 0.22 -0.76 16 26 N -0.41 -9.46 11.85 -59.05 -0.70 -10.16 16 27 O 0.07 1.33 11.29 74.61 0.84 2.17 16 28 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.12 -0.44 8.14 -2.39 -0.02 -0.45 16 30 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.15 2.62 7.87 -2.91 -0.02 2.59 16 32 H 0.16 2.40 6.28 -2.91 -0.02 2.38 16 33 H 0.08 1.75 7.65 -2.39 -0.02 1.73 16 34 H 0.12 1.97 7.66 -2.38 -0.02 1.95 16 35 H 0.04 1.34 7.20 -2.39 -0.02 1.32 16 36 H 0.07 2.32 7.57 -2.39 -0.02 2.31 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.14 2.84 7.86 -2.91 -0.02 2.81 16 Total: -1.00 -77.02 349.97 5.18 -71.85 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.03 Total: 8.01 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.75 Total: -10.27 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.43 Total: -104.03 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.06 Total: -7.12 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.88 Total: 41.58 kcal Total: -77.02 5.18 -71.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270056887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.092 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds