Wall clock time and date at job start Tue Mar 31 2020 10:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35512 * 116.99904 * 2 1 4 4 C 1.39446 * 120.47362 * 180.02562 * 3 2 1 5 5 C 1.38208 * 118.49084 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.36841 * 180.02562 * 5 4 3 7 7 N 1.32453 * 119.25782 * 359.97438 * 5 4 3 8 8 C 1.32394 * 120.89629 * 0.02562 * 7 5 4 9 9 N 1.38834 * 119.17434 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00214 * 180.02562 * 9 8 7 11 11 O 1.21542 * 119.99838 * 359.97438 * 10 9 8 12 12 C 1.47840 * 120.00195 * 179.97438 * 10 9 8 13 13 C 1.39937 * 120.02710 * 359.93359 * 12 10 9 14 14 C 1.38322 * 120.35488 * 179.97438 * 13 12 10 15 15 C 1.37758 * 120.41611 * 0.04580 * 14 13 12 16 16 C 1.40756 * 120.04217 * 359.97438 * 15 14 13 17 17 C 1.41432 * 120.17419 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00030 * 150.17373 * 17 16 15 19 19 C 1.39939 * 120.00568 * 330.18352 * 17 16 15 20 20 N 1.30824 * 120.00591 * 161.73085 * 19 17 16 21 21 Si 1.86802 * 119.99461 * 341.72346 * 19 17 16 22 22 H 1.48505 * 109.47086 * 95.41852 * 21 19 17 23 23 H 1.48490 * 109.47368 * 215.41584 * 21 19 17 24 24 H 1.48499 * 109.47541 * 335.41851 * 21 19 17 25 25 C 1.39017 * 120.02394 * 179.97438 * 12 10 9 26 26 N 1.32415 * 121.64926 * 0.26821 * 8 7 5 27 27 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46991 * 300.00287 * 1 2 3 29 29 H 1.08998 * 109.46898 * 60.00358 * 1 2 3 30 30 H 1.07999 * 120.75362 * 359.97438 * 4 3 2 31 31 H 1.08999 * 109.46363 * 269.97505 * 6 5 4 32 32 H 1.09000 * 109.47026 * 29.97461 * 6 5 4 33 33 H 1.09000 * 109.46940 * 149.97988 * 6 5 4 34 34 H 0.96998 * 120.00056 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.81976 * 0.02562 * 13 12 10 36 36 H 1.08000 * 119.79055 * 180.02562 * 14 13 12 37 37 H 1.07996 * 119.97950 * 179.97438 * 15 14 13 38 38 H 0.96998 * 119.99940 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.20814 * 0.25834 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4362 1.2919 -0.0005 5 6 4.0206 2.5444 -0.0011 6 6 5.5211 2.6849 -0.0022 7 7 3.2472 3.6196 -0.0016 8 6 1.9280 3.5082 -0.0010 9 7 1.1515 4.6591 -0.0010 10 6 -0.1929 4.5650 0.0000 11 8 -0.7257 3.4726 0.0005 12 6 -1.0197 5.7906 0.0006 13 6 -0.4070 7.0487 0.0014 14 6 -1.1739 8.1998 0.0014 15 6 -2.5493 8.1215 0.0015 16 6 -3.1835 6.8649 0.0011 17 6 -4.5954 6.7812 0.0017 18 1 -5.0867 5.9396 -0.4637 19 6 -5.3559 7.7890 0.6053 20 7 -6.6245 7.9158 0.3121 21 14 -4.5595 8.9533 1.8299 22 1 -4.1367 10.1935 1.1309 23 1 -5.5356 9.2942 2.8957 24 1 -3.3729 8.2981 2.4365 25 6 -2.4065 5.6942 0.0011 26 7 1.3305 2.3265 0.0053 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0437 0.3990 -0.0005 31 1 5.8834 2.7193 1.0252 32 1 5.9654 1.8325 -0.5160 33 1 5.7994 3.6047 -0.5166 34 1 1.5767 5.5309 -0.0010 35 1 0.6706 7.1212 0.0013 36 1 -0.6915 9.1661 0.0017 37 1 -3.1413 9.0247 0.0020 38 1 -7.1517 8.6141 0.7307 39 1 -2.8838 4.7254 0.0053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342409210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:31 Heat of formation + Delta-G solvation = 12.015791 kcal Electronic energy + Delta-G solvation = -24711.244386 eV Core-core repulsion = 21005.928324 eV Total energy + Delta-G solvation = -3705.316063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44116 -39.62885 -38.49242 -37.42365 -35.05573 -33.87832 -33.54929 -31.61303 -30.54882 -30.07678 -28.96635 -26.91132 -25.50987 -24.53320 -23.11043 -22.28354 -20.80059 -20.13333 -19.08137 -17.81827 -17.44035 -16.66467 -16.36510 -16.27591 -15.54163 -15.42538 -15.14292 -14.77332 -14.50412 -14.20624 -14.10412 -13.75298 -13.38059 -13.07215 -12.88195 -12.81911 -12.58940 -12.12458 -11.99832 -11.77682 -11.64335 -11.17986 -11.03952 -10.88240 -10.62595 -10.49801 -10.08466 -9.84460 -9.83187 -9.67394 -9.32886 -9.03770 -8.57203 -7.97966 -7.85734 -7.07543 -4.63102 0.89229 1.13232 1.82536 2.43373 2.58830 2.92585 3.00562 3.12855 3.19946 3.36853 3.85820 3.89195 3.91399 4.40246 4.46733 4.68818 5.04279 5.08692 5.22795 5.27816 5.28746 5.31597 5.42206 5.44366 5.58415 5.75655 5.77729 5.91455 5.98027 6.28676 6.45201 6.55581 6.57498 6.80939 6.86919 7.02901 7.17575 7.23701 7.33310 7.40730 7.66853 7.83759 8.20097 8.21306 8.43150 8.45277 8.63267 9.94336 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.003159 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.174373 B = 8862.570507 C = 9871.923756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.389 3.611 4 C -0.288 4.288 5 C 0.227 3.773 6 C -0.101 4.101 7 N -0.575 5.575 8 C 0.587 3.413 9 N -0.637 5.637 10 C 0.560 3.440 11 O -0.474 6.474 12 C -0.107 4.107 13 C -0.218 4.218 14 C -0.080 4.080 15 C -0.220 4.220 16 C 0.082 3.918 17 C -0.440 4.440 18 H 0.095 0.905 19 C 0.083 3.917 20 N -0.801 5.801 21 Si 0.911 3.089 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.243 1.243 25 C -0.131 4.131 26 N -0.560 5.560 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.425 0.575 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.287 0.713 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.160 -7.877 0.597 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.200 3.800 4 C -0.313 4.313 5 C 0.082 3.918 6 C -0.159 4.159 7 N -0.302 5.302 8 C 0.231 3.769 9 N -0.288 5.288 10 C 0.350 3.650 11 O -0.344 6.344 12 C -0.110 4.110 13 C -0.238 4.238 14 C -0.098 4.098 15 C -0.239 4.239 16 C 0.079 3.921 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.137 4.137 20 N -0.424 5.424 21 Si 0.737 3.263 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.166 1.166 25 C -0.151 4.151 26 N -0.297 5.297 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.265 0.735 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.854 -8.041 0.607 18.684 hybrid contribution 0.511 0.455 0.497 0.845 sum 17.365 -7.586 1.104 18.981 Atomic orbital electron populations 1.22974 0.75879 1.02747 1.03962 1.86200 1.24051 1.23775 1.86570 1.19962 0.89001 0.84834 0.86160 1.21490 0.92618 1.00248 1.16990 1.21173 0.96743 0.86570 0.87323 1.20752 0.87209 1.04131 1.03784 1.67698 1.03755 1.34256 1.24475 1.19031 0.84819 0.85337 0.87737 1.43478 1.06830 1.06859 1.71621 1.19064 0.80050 0.90574 0.75335 1.90785 1.71110 1.28461 1.44023 1.19243 0.93744 0.90481 1.07577 1.20405 0.97211 0.91735 1.14438 1.20513 0.93873 0.96625 0.98782 1.21216 0.94056 0.97233 1.11401 1.17678 0.93741 0.90612 0.90089 1.19530 0.89396 1.06897 1.31007 0.88753 1.26182 0.94710 0.96413 0.96362 1.69684 1.08282 1.29285 1.35143 0.86312 0.80010 0.80109 0.79917 1.19444 1.21558 1.16637 1.21251 0.90743 0.98496 1.04641 1.68078 1.39690 0.97347 1.24596 0.88597 0.91492 0.91498 0.83281 0.89517 0.89929 0.89740 0.73519 0.88426 0.88016 0.87732 0.90198 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.41 101.05 1.05 1.55 16 2 O -0.30 -4.16 10.49 -18.23 -0.19 -4.35 16 3 C 0.39 5.81 7.53 -16.71 -0.13 5.68 16 4 C -0.29 -3.41 9.80 -39.14 -0.38 -3.80 16 5 C 0.23 2.63 6.81 -82.33 -0.56 2.06 16 6 C -0.10 -0.70 10.21 36.01 0.37 -0.33 16 7 N -0.57 -8.24 10.39 -10.14 -0.11 -8.34 16 8 C 0.59 9.80 8.38 -322.41 -2.70 7.10 16 9 N -0.64 -10.56 5.35 -13.95 -0.07 -10.63 16 10 C 0.56 11.01 7.73 -12.33 -0.10 10.92 16 11 O -0.47 -10.39 14.52 5.33 0.08 -10.31 16 12 C -0.11 -2.22 5.87 -105.04 -0.62 -2.83 16 13 C -0.22 -4.08 9.55 -38.91 -0.37 -4.45 16 14 C -0.08 -1.57 10.01 -39.73 -0.40 -1.97 16 15 C -0.22 -4.96 7.17 -38.81 -0.28 -5.24 16 16 C 0.08 2.00 5.10 -106.87 -0.55 1.45 16 17 C -0.44 -11.53 9.57 -37.73 -0.36 -11.89 16 18 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 19 C 0.08 2.10 5.40 -17.34 -0.09 2.01 16 20 N -0.80 -20.67 13.93 55.55 0.77 -19.89 16 21 Si 0.91 19.86 24.52 -169.99 -4.17 15.69 16 22 H -0.27 -5.61 6.71 56.52 0.38 -5.23 16 23 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.24 -5.43 6.86 56.52 0.39 -5.04 16 25 C -0.13 -3.04 9.34 -38.44 -0.36 -3.40 16 26 N -0.56 -9.81 6.81 -13.91 -0.09 -9.90 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 29 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.42 5.93 6.83 -40.82 -0.28 5.65 16 35 H 0.10 1.47 6.38 -52.49 -0.33 1.13 16 36 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.10 2.34 4.72 -52.49 -0.25 2.09 16 38 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.12 2.74 7.64 -52.49 -0.40 2.34 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -29.77 336.35 -8.42 -38.19 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.23 Total: 7.62 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -5.47 Total: -3.13 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.50 Total: -48.78 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.11 Total: -14.66 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.77 -8.42 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342409210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.204 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds