Wall clock time and date at job start Tue Mar 31 2020 10:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35512 * 116.99904 * 2 1 4 4 C 1.39446 * 120.47362 * 180.02562 * 3 2 1 5 5 C 1.38208 * 118.49084 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.36841 * 180.02562 * 5 4 3 7 7 N 1.32453 * 119.25782 * 359.97438 * 5 4 3 8 8 C 1.32394 * 120.89629 * 0.02562 * 7 5 4 9 9 N 1.38834 * 119.17434 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00214 * 180.02562 * 9 8 7 11 11 O 1.21542 * 119.99838 * 359.97438 * 10 9 8 12 12 C 1.47840 * 120.00195 * 179.97438 * 10 9 8 13 13 C 1.39937 * 120.02710 * 359.93359 * 12 10 9 14 14 C 1.38322 * 120.35488 * 179.97438 * 13 12 10 15 15 C 1.37758 * 120.41611 * 0.04580 * 14 13 12 16 16 C 1.40756 * 120.04217 * 359.97438 * 15 14 13 17 17 C 1.41432 * 120.17419 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00030 * 150.17373 * 17 16 15 19 19 C 1.39939 * 120.00568 * 330.18352 * 17 16 15 20 20 N 1.30824 * 120.00591 * 161.73085 * 19 17 16 21 21 Si 1.86802 * 119.99461 * 341.72346 * 19 17 16 22 22 H 1.48505 * 109.47086 * 95.41852 * 21 19 17 23 23 H 1.48490 * 109.47368 * 215.41584 * 21 19 17 24 24 H 1.48499 * 109.47541 * 335.41851 * 21 19 17 25 25 C 1.39017 * 120.02394 * 179.97438 * 12 10 9 26 26 N 1.32415 * 121.64926 * 0.26821 * 8 7 5 27 27 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46991 * 300.00287 * 1 2 3 29 29 H 1.08998 * 109.46898 * 60.00358 * 1 2 3 30 30 H 1.07999 * 120.75362 * 359.97438 * 4 3 2 31 31 H 1.08999 * 109.46363 * 269.97505 * 6 5 4 32 32 H 1.09000 * 109.47026 * 29.97461 * 6 5 4 33 33 H 1.09000 * 109.46940 * 149.97988 * 6 5 4 34 34 H 0.96998 * 120.00056 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.81976 * 0.02562 * 13 12 10 36 36 H 1.08000 * 119.79055 * 180.02562 * 14 13 12 37 37 H 1.07996 * 119.97950 * 179.97438 * 15 14 13 38 38 H 0.96998 * 119.99940 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.20814 * 0.25834 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4362 1.2919 -0.0005 5 6 4.0206 2.5444 -0.0011 6 6 5.5211 2.6849 -0.0022 7 7 3.2472 3.6196 -0.0016 8 6 1.9280 3.5082 -0.0010 9 7 1.1515 4.6591 -0.0010 10 6 -0.1929 4.5650 0.0000 11 8 -0.7257 3.4726 0.0005 12 6 -1.0197 5.7906 0.0006 13 6 -0.4070 7.0487 0.0014 14 6 -1.1739 8.1998 0.0014 15 6 -2.5493 8.1215 0.0015 16 6 -3.1835 6.8649 0.0011 17 6 -4.5954 6.7812 0.0017 18 1 -5.0867 5.9396 -0.4637 19 6 -5.3559 7.7890 0.6053 20 7 -6.6245 7.9158 0.3121 21 14 -4.5595 8.9533 1.8299 22 1 -4.1367 10.1935 1.1309 23 1 -5.5356 9.2942 2.8957 24 1 -3.3729 8.2981 2.4365 25 6 -2.4065 5.6942 0.0011 26 7 1.3305 2.3265 0.0053 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0437 0.3990 -0.0005 31 1 5.8834 2.7193 1.0252 32 1 5.9654 1.8325 -0.5160 33 1 5.7994 3.6047 -0.5166 34 1 1.5767 5.5309 -0.0010 35 1 0.6706 7.1212 0.0013 36 1 -0.6915 9.1661 0.0017 37 1 -3.1413 9.0247 0.0020 38 1 -7.1517 8.6141 0.7307 39 1 -2.8838 4.7254 0.0053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342409210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:30 Heat of formation + Delta-G solvation = -6.862272 kcal Electronic energy + Delta-G solvation = -24712.063001 eV Core-core repulsion = 21005.928324 eV Total energy + Delta-G solvation = -3706.134677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58640 -41.07339 -39.63994 -39.05811 -36.36508 -35.61206 -34.76242 -32.94802 -32.12186 -31.69506 -29.84605 -27.87940 -27.26748 -25.98504 -24.32125 -23.58137 -22.51248 -21.58349 -20.40788 -19.26416 -18.73637 -18.09484 -17.70140 -17.49822 -17.17528 -16.51810 -16.41973 -16.39465 -15.76154 -15.55926 -15.39099 -15.33329 -14.60469 -14.54765 -14.22037 -13.95804 -13.80509 -13.41109 -13.10935 -12.98594 -12.88546 -12.85258 -12.70915 -12.38244 -12.14079 -11.77463 -11.60121 -11.60009 -11.24206 -11.00749 -10.99322 -10.29471 -9.77485 -9.66084 -9.56962 -8.93479 -6.57815 -0.30667 0.09531 0.24367 0.71096 1.25251 1.34215 1.41349 1.47869 1.81811 1.87801 2.10561 2.56357 2.76500 2.88768 3.28024 3.41495 3.77981 3.82301 4.17756 4.22711 4.27740 4.30941 4.35450 4.36987 4.54283 4.67382 4.81454 4.82985 4.83970 4.87479 4.87865 5.09408 5.14061 5.36579 5.38843 5.56409 5.65897 5.73454 5.81634 5.94018 6.08741 6.14238 6.28159 6.61469 6.71374 6.90492 7.13431 8.15385 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.003159 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.174373 B = 8862.570507 C = 9871.923756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.301 6.301 3 C 0.362 3.638 4 C -0.271 4.271 5 C 0.222 3.778 6 C -0.097 4.097 7 N -0.572 5.572 8 C 0.563 3.437 9 N -0.625 5.625 10 C 0.563 3.437 11 O -0.506 6.506 12 C -0.110 4.110 13 C -0.183 4.183 14 C -0.079 4.079 15 C -0.222 4.222 16 C 0.067 3.933 17 C -0.487 4.487 18 H 0.051 0.949 19 C 0.046 3.954 20 N -0.848 5.848 21 Si 0.966 3.034 22 H -0.245 1.245 23 H -0.278 1.278 24 H -0.251 1.251 25 C -0.159 4.159 26 N -0.597 5.597 27 H 0.133 0.867 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.185 0.815 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.437 0.563 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.296 0.704 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.461 -6.807 1.220 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.205 6.205 3 C 0.175 3.825 4 C -0.295 4.295 5 C 0.078 3.922 6 C -0.153 4.153 7 N -0.299 5.299 8 C 0.207 3.793 9 N -0.277 5.277 10 C 0.352 3.648 11 O -0.378 6.378 12 C -0.113 4.113 13 C -0.203 4.203 14 C -0.096 4.096 15 C -0.241 4.241 16 C 0.064 3.936 17 C -0.516 4.516 18 H 0.069 0.931 19 C -0.169 4.169 20 N -0.473 5.473 21 Si 0.788 3.212 22 H -0.170 1.170 23 H -0.205 1.205 24 H -0.174 1.174 25 C -0.179 4.179 26 N -0.334 5.334 27 H 0.151 0.849 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.203 0.797 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.279 0.721 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.213 -6.980 1.216 23.315 hybrid contribution -0.778 -0.053 0.234 0.814 sum 21.435 -7.032 1.450 22.605 Atomic orbital electron populations 1.22969 0.75697 1.04476 1.01808 1.86202 1.24163 1.23485 1.86678 1.20449 0.90346 0.84469 0.87264 1.21952 0.91379 1.01887 1.14329 1.22081 0.98746 0.85758 0.85573 1.20935 0.83404 1.05658 1.05343 1.67797 1.02523 1.35415 1.24170 1.19121 0.85732 0.84998 0.89469 1.43076 1.05607 1.07780 1.71196 1.18855 0.81108 0.89668 0.75165 1.90781 1.72091 1.29415 1.45526 1.19433 0.92846 0.92266 1.06784 1.21026 0.99802 0.90197 1.09234 1.21039 0.92558 0.99098 0.96949 1.21441 0.95817 0.96235 1.10626 1.17746 0.93034 0.92027 0.90753 1.19461 0.90841 1.07037 1.34259 0.93055 1.26904 0.95049 0.97627 0.97322 1.69719 1.09573 1.31007 1.37042 0.85487 0.78981 0.78787 0.77969 1.16953 1.20478 1.17414 1.21167 0.92329 0.97458 1.06953 1.67937 1.41505 0.98457 1.25514 0.84865 0.93636 0.93641 0.79745 0.87697 0.87109 0.89328 0.72069 0.83386 0.83188 0.87371 0.89376 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.18 10.41 113.37 1.18 2.36 16 2 O -0.30 -8.12 10.49 -88.14 -0.92 -9.04 16 3 C 0.36 10.46 7.53 84.85 0.64 11.10 16 4 C -0.27 -5.60 9.80 22.55 0.22 -5.38 16 5 C 0.22 4.37 6.81 42.46 0.29 4.66 16 6 C -0.10 -0.86 10.21 71.24 0.73 -0.13 16 7 N -0.57 -14.88 10.39 -186.01 -1.93 -16.81 16 8 C 0.56 18.12 8.38 261.35 2.19 20.31 16 9 N -0.62 -19.69 5.35 -316.34 -1.69 -21.38 16 10 C 0.56 22.12 7.73 86.78 0.67 22.79 16 11 O -0.51 -23.16 14.52 -3.85 -0.06 -23.22 16 12 C -0.11 -4.48 5.87 -20.14 -0.12 -4.60 16 13 C -0.18 -6.12 9.55 22.70 0.22 -5.90 16 14 C -0.08 -2.75 10.01 22.18 0.22 -2.53 16 15 C -0.22 -9.70 7.17 22.77 0.16 -9.53 16 16 C 0.07 3.39 5.10 -21.32 -0.11 3.28 16 17 C -0.49 -27.57 9.57 23.47 0.22 -27.34 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 19 C 0.05 2.43 5.40 85.26 0.46 2.89 16 20 N -0.85 -46.35 13.93 21.82 0.30 -46.05 16 21 Si 0.97 40.99 24.52 68.60 1.68 42.67 16 22 H -0.24 -9.39 6.71 99.48 0.67 -8.73 16 23 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.25 -10.79 6.86 99.48 0.68 -10.11 16 25 C -0.16 -7.73 9.34 23.01 0.21 -7.51 16 26 N -0.60 -20.93 6.81 -310.62 -2.11 -23.04 16 27 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 1.36 8.12 -2.39 -0.02 1.34 16 29 H 0.04 1.36 8.12 -2.39 -0.02 1.34 16 30 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.42 8.09 -2.39 -0.02 0.40 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.44 10.73 6.83 -92.71 -0.63 10.09 16 35 H 0.15 3.50 6.38 -2.91 -0.02 3.49 16 36 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.11 4.64 4.72 -2.91 -0.01 4.62 16 38 H 0.30 14.40 8.30 -92.71 -0.77 13.63 16 39 H 0.09 4.86 7.64 -2.91 -0.02 4.83 16 Total: -1.00 -71.70 336.35 2.87 -68.83 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.41 Total: 23.58 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 7.19 Total: 4.46 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -5.43 Total: -107.28 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.98 Total: -32.26 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.68 Total: 42.67 kcal Total: -71.70 2.87 -68.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342409210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.963 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds