Wall clock time and date at job start Tue Mar 31 2020 10:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48499 * 109.47112 * 240.00027 * 3 2 1 5 5 H 1.48505 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47191 * 119.99771 * 3 2 1 7 7 C 1.37880 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99395 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47049 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00031 * 84.17227 * 10 9 7 12 12 C 1.50695 * 109.47335 * 270.00403 * 11 10 9 13 13 C 1.38225 * 119.62172 * 94.97828 * 12 11 10 14 14 C 1.38629 * 119.16414 * 179.79367 * 13 12 11 15 15 C 1.38670 * 118.41883 * 0.46975 * 14 13 12 16 16 C 1.38181 * 119.16508 * 359.50764 * 15 14 13 17 17 N 1.31862 * 119.61828 * 274.99829 * 12 11 10 18 18 C 1.34777 * 120.00458 * 264.17547 * 10 9 7 19 19 O 1.21545 * 120.00645 * 175.26861 * 18 10 9 20 20 C 1.47860 * 119.99412 * 355.27246 * 18 10 9 21 21 C 1.39565 * 120.52865 * 228.70850 * 20 18 10 22 22 N 1.31659 * 120.68835 * 179.75265 * 21 20 18 23 23 C 1.31901 * 121.94022 * 0.53626 * 22 21 20 24 24 C 1.38813 * 121.00556 * 359.72615 * 23 22 21 25 25 O 1.35921 * 120.40799 * 180.02562 * 24 23 22 26 26 C 1.38882 * 119.18746 * 359.97438 * 24 23 22 27 27 H 0.96998 * 120.00328 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47645 * 60.00074 * 9 7 2 29 29 H 1.08999 * 109.47392 * 299.99551 * 9 7 2 30 30 H 1.08999 * 109.47559 * 150.00088 * 11 10 9 31 31 H 1.09006 * 109.46905 * 30.00290 * 11 10 9 32 32 H 1.08003 * 120.41688 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.78872 * 180.23328 * 14 13 12 34 34 H 1.07999 * 120.41685 * 179.78703 * 15 14 13 35 35 H 1.07999 * 119.62169 * 180.25460 * 16 15 14 36 36 H 1.08001 * 119.65815 * 359.97438 * 21 20 18 37 37 H 1.07996 * 119.50031 * 179.74495 * 23 22 21 38 38 H 0.96701 * 114.00155 * 269.97982 * 25 24 23 39 39 H 1.07998 * 120.88398 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.7770 -4.0857 1.2627 12 6 4.0481 -3.3293 1.5513 13 6 4.0090 -2.2133 2.3658 14 6 5.1846 -1.5272 2.6285 15 6 6.3593 -1.9856 2.0515 16 6 6.3211 -3.1091 1.2480 17 7 5.1847 -3.7397 1.0236 18 6 2.5510 -4.2019 -1.1606 19 8 3.4044 -5.0673 -1.1712 20 6 1.8946 -3.7953 -2.4216 21 6 1.3837 -4.7552 -3.2964 22 7 0.7944 -4.3966 -4.4178 23 6 0.6703 -3.1307 -4.7670 24 6 1.1559 -2.1143 -3.9558 25 8 1.0210 -0.8138 -4.3273 26 6 1.7803 -2.4424 -2.7595 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.9974 -5.1503 1.1853 31 1 2.0642 -3.9200 2.0706 32 1 3.0749 -1.8816 2.7946 33 1 5.1850 -0.6541 3.2643 34 1 7.2930 -1.4736 2.2316 35 1 7.2323 -3.4750 0.7982 36 1 1.4696 -5.8031 -3.0493 37 1 0.1832 -2.8811 -5.6980 38 1 1.7598 -0.4759 -4.8518 39 1 2.1678 -1.6737 -2.1073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346328421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:57 Heat of formation + Delta-G solvation = -15.476946 kcal Electronic energy + Delta-G solvation = -26222.522549 eV Core-core repulsion = 22516.014311 eV Total energy + Delta-G solvation = -3706.508237 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84321 -41.04131 -40.00626 -38.11167 -36.93688 -34.75041 -33.77813 -33.22192 -32.30278 -31.20880 -29.49664 -27.85866 -25.43101 -24.73466 -24.39659 -24.22887 -22.97145 -20.87447 -19.08184 -18.69398 -18.15364 -17.95792 -17.78852 -17.57825 -17.04104 -16.85048 -16.46663 -16.34904 -15.84110 -15.33616 -14.95524 -14.46479 -14.41921 -14.35541 -14.13080 -14.05593 -13.84794 -13.69188 -13.21927 -13.11882 -12.77322 -12.67021 -12.50615 -12.35247 -12.11777 -11.76472 -11.29047 -10.75615 -10.69715 -10.49499 -10.37673 -10.29967 -9.94203 -9.83654 -9.49888 -8.19500 -6.30989 -0.26929 0.13350 0.24831 0.49222 1.38627 1.41908 1.47596 1.71801 2.17733 2.40133 2.64309 3.02809 3.11279 3.12677 3.44113 3.49517 3.62752 3.87145 3.92503 4.03287 4.06687 4.25633 4.32642 4.37621 4.49715 4.55078 4.60998 4.82240 4.85416 4.94991 5.02124 5.18569 5.20970 5.29967 5.36698 5.47159 5.65011 5.75715 5.89253 6.04691 6.46248 6.68909 6.78342 6.84634 7.19398 7.21436 7.39350 8.85735 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.006790 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.012083 B = 4122.570784 C = 5752.756010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.050 0.950 9 C 0.247 3.753 10 N -0.584 5.584 11 C 0.170 3.830 12 C 0.101 3.899 13 C -0.141 4.141 14 C -0.090 4.090 15 C -0.167 4.167 16 C 0.072 3.928 17 N -0.495 5.495 18 C 0.559 3.441 19 O -0.560 6.560 20 C -0.171 4.171 21 C 0.128 3.872 22 N -0.481 5.481 23 C 0.095 3.905 24 C 0.050 3.950 25 O -0.494 6.494 26 C -0.070 4.070 27 H 0.266 0.734 28 H 0.028 0.972 29 H 0.025 0.975 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.409 0.591 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -1.138 -0.521 6.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.127 3.873 10 N -0.313 5.313 11 C 0.046 3.954 12 C -0.037 4.037 13 C -0.162 4.162 14 C -0.116 4.116 15 C -0.187 4.187 16 C -0.085 4.085 17 N -0.204 5.204 18 C 0.347 3.653 19 O -0.440 6.440 20 C -0.176 4.176 21 C -0.029 4.029 22 N -0.190 5.190 23 C -0.063 4.063 24 C 0.003 3.997 25 O -0.305 6.305 26 C -0.096 4.096 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.172 0.828 34 H 0.182 0.818 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.211 0.789 38 H 0.268 0.732 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.799 -2.865 -1.278 6.593 hybrid contribution 0.914 2.662 0.971 2.977 sum 6.713 -0.203 -0.307 6.723 Atomic orbital electron populations 1.69982 1.07101 1.28025 1.49509 1.25422 0.95168 1.01409 0.94377 0.85915 0.78680 0.80013 0.79041 1.20126 1.21248 1.19101 1.21274 0.92702 0.90648 1.51747 0.93144 1.19342 0.87417 0.82903 0.97685 1.48073 1.43829 1.34128 1.05298 1.20269 0.90852 0.97853 0.86393 1.21534 0.93757 0.94758 0.93668 1.22071 0.99978 0.95262 0.98881 1.21894 0.92175 0.99248 0.98241 1.22428 1.00230 0.97729 0.98326 1.23156 0.96081 0.93216 0.96053 1.67526 0.99253 1.32904 1.20765 1.18305 0.81809 0.81296 0.83933 1.90732 1.32598 1.33896 1.86824 1.20901 1.04383 0.94794 0.97498 1.22936 0.91647 0.99951 0.88369 1.67784 1.15113 1.19342 1.16807 1.23683 0.95939 0.86840 0.99844 1.19442 1.00255 0.85909 0.94112 1.84861 1.48718 1.22024 1.74920 1.22964 0.93584 0.96610 0.96426 0.92459 0.95393 0.95662 0.89696 0.87469 0.84717 0.82821 0.81772 0.81308 0.80904 0.78884 0.73248 0.82805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.75 13.29 21.45 0.28 -47.46 16 2 C 0.04 1.89 5.46 84.66 0.46 2.35 16 3 Si 0.94 39.65 29.54 68.60 2.03 41.68 16 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.53 -25.12 6.06 25.60 0.16 -24.96 16 8 H 0.05 2.52 6.92 -2.91 -0.02 2.50 16 9 C 0.25 11.31 4.71 85.63 0.40 11.71 16 10 N -0.58 -24.45 2.45 -833.91 -2.05 -26.50 16 11 C 0.17 6.31 5.71 85.63 0.49 6.80 16 12 C 0.10 3.76 5.79 42.55 0.25 4.01 16 13 C -0.14 -4.74 8.57 22.36 0.19 -4.55 16 14 C -0.09 -2.52 10.18 22.47 0.23 -2.29 16 15 C -0.17 -4.29 10.11 22.36 0.23 -4.07 16 16 C 0.07 2.20 11.18 84.67 0.95 3.14 16 17 N -0.49 -18.83 10.27 -183.89 -1.89 -20.72 16 18 C 0.56 24.10 7.25 86.79 0.63 24.73 16 19 O -0.56 -26.02 16.66 -3.86 -0.06 -26.08 16 20 C -0.17 -6.80 4.92 -20.00 -0.10 -6.90 16 21 C 0.13 4.51 10.89 85.04 0.93 5.43 16 22 N -0.48 -15.78 10.34 -194.40 -2.01 -17.79 16 23 C 0.09 2.83 11.13 84.82 0.94 3.78 16 24 C 0.05 1.70 6.73 22.56 0.15 1.85 16 25 O -0.49 -15.35 13.52 -92.66 -1.25 -16.60 16 26 C -0.07 -2.81 7.63 22.83 0.17 -2.63 16 27 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.03 1.39 5.45 -2.38 -0.01 1.38 16 29 H 0.03 1.21 7.98 -2.39 -0.02 1.19 16 30 H 0.08 3.18 7.49 -2.39 -0.02 3.16 16 31 H 0.11 3.47 7.85 -2.38 -0.02 3.45 16 32 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.17 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 37 H 0.19 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.41 8.08 9.06 -74.06 -0.67 7.40 16 39 H 0.15 7.06 4.92 -2.91 -0.01 7.04 16 Total: -1.00 -65.71 340.04 1.56 -64.15 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.44 Total: 30.93 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.08 Total: 18.40 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -5.66 Total: -112.47 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.32 Total: -42.69 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -65.71 1.56 -64.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346328421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.670 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds