Wall clock time and date at job start Tue Mar 31 2020 11:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00019 * 2 1 4 4 N 1.46504 * 109.47214 * 124.99770 * 3 2 1 5 5 C 1.34774 * 119.99746 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00059 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99551 * 179.97438 * 5 4 3 8 8 C 1.50703 * 109.47020 * 180.02562 * 7 5 4 9 9 N 1.30035 * 126.18515 * 89.97336 * 8 7 5 10 10 O 1.21291 * 110.48039 * 179.97438 * 9 8 7 11 11 C 1.34195 * 109.69445 * 0.02562 * 10 9 8 12 12 C 1.47843 * 126.67233 * 179.97438 * 11 10 9 13 13 C 1.39935 * 120.02683 * 180.27465 * 12 11 10 14 14 C 1.38331 * 120.36013 * 180.25944 * 13 12 11 15 15 C 1.37753 * 120.40880 * 359.76875 * 14 13 12 16 16 C 1.40765 * 120.03941 * 359.97438 * 15 14 13 17 17 C 1.41430 * 120.17500 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99558 * 150.18182 * 17 16 15 19 19 C 1.39925 * 120.00088 * 330.17439 * 17 16 15 20 20 N 1.30831 * 119.99598 * 161.73187 * 19 17 16 21 21 Si 1.86800 * 120.00223 * 341.73326 * 19 17 16 22 22 H 1.48496 * 109.47179 * 95.41303 * 21 19 17 23 23 H 1.48501 * 109.47009 * 215.41106 * 21 19 17 24 24 H 1.48503 * 109.47020 * 335.41375 * 21 19 17 25 25 C 1.38987 * 120.02760 * 0.02562 * 12 11 10 26 26 N 1.32105 * 106.65113 * 0.25574 * 11 10 9 27 27 H 1.08001 * 120.00066 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00010 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46760 * 5.00286 * 3 2 1 31 31 H 1.08989 * 109.47104 * 244.99992 * 3 2 1 32 32 H 0.97001 * 119.99548 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.46887 * 60.00600 * 7 5 4 34 34 H 1.09000 * 109.47079 * 300.00178 * 7 5 4 35 35 H 1.08003 * 119.81884 * 0.02562 * 13 12 11 36 36 H 1.08000 * 119.79525 * 179.74719 * 14 13 12 37 37 H 1.07990 * 119.98253 * 179.97438 * 15 14 13 38 38 H 0.97010 * 119.99527 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.20351 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 3.7789 2.4087 1.3329 6 8 3.7151 3.3555 0.5777 7 6 4.7354 2.4365 2.4971 8 6 5.4890 3.7415 2.4970 9 7 5.1279 4.8366 3.0982 10 8 5.9451 5.7130 2.9105 11 6 6.9420 5.2452 2.1435 12 6 8.1309 5.9956 1.6861 13 6 9.0877 5.3681 0.8805 14 6 10.2054 6.0621 0.4531 15 6 10.3872 7.3797 0.8113 16 6 9.4327 8.0292 1.6167 17 6 9.6163 9.3821 1.9857 18 1 8.7589 10.0155 2.1594 19 6 10.9086 9.8999 2.1260 20 7 11.0999 11.1941 2.1108 21 14 12.3607 8.7435 2.3348 22 1 12.9935 8.4999 1.0136 23 1 13.3533 9.3563 3.2536 24 1 11.8895 7.4549 2.9030 25 6 8.2965 7.3262 2.0516 26 7 6.6512 3.9855 1.8717 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 3.0445 0.5748 1.7356 33 1 5.4400 1.6097 2.4082 34 1 4.1772 2.3397 3.4283 35 1 8.9547 4.3353 0.5941 36 1 10.9402 5.5677 -0.1650 37 1 11.2625 7.9148 0.4741 38 1 11.9958 11.5531 2.2084 39 1 7.5584 7.8159 2.6696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350727587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:46 Heat of formation + Delta-G solvation = 68.819716 kcal Electronic energy + Delta-G solvation = -23895.495320 eV Core-core repulsion = 20192.642461 eV Total energy + Delta-G solvation = -3702.852860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.07731 -39.94832 -38.00240 -36.29436 -35.51034 -33.98591 -33.27241 -32.79182 -30.53831 -30.45280 -29.27056 -26.37563 -25.34487 -24.01978 -22.88718 -21.26615 -20.82265 -20.60813 -20.04732 -18.02100 -17.88985 -17.06671 -16.83539 -16.56901 -16.05402 -15.77150 -15.16790 -14.79441 -14.54587 -14.12011 -14.04228 -13.64876 -13.56701 -13.10716 -12.90563 -12.76567 -12.36165 -12.26405 -11.98938 -11.81950 -11.64152 -11.37975 -11.06193 -10.95491 -10.73015 -10.56142 -10.41479 -10.05235 -9.97451 -9.77086 -9.74063 -9.38811 -9.26292 -7.90361 -7.72167 -7.04335 -4.60666 1.13875 1.56933 2.14791 2.37933 2.45996 2.87825 3.04175 3.11843 3.15923 3.24596 3.26968 3.77941 3.89621 4.24957 4.29462 4.37608 4.54174 4.61067 4.94103 5.06081 5.12813 5.23616 5.33310 5.37454 5.52891 5.87140 5.95540 5.99416 6.02439 6.09712 6.20401 6.28404 6.34263 6.54574 6.67973 6.88320 7.12155 7.15067 7.35196 7.47132 7.66576 7.82487 7.92481 8.22613 8.43976 8.52988 8.65883 9.97582 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.035652 B = 0.002341 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.180854 B =11959.387594 C =12159.608349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.146 3.854 4 N -0.729 5.729 5 C 0.519 3.481 6 O -0.521 6.521 7 C -0.044 4.044 8 C 0.181 3.819 9 N -0.389 5.389 10 O 0.079 5.921 11 C 0.262 3.738 12 C -0.011 4.011 13 C -0.185 4.185 14 C -0.082 4.082 15 C -0.213 4.213 16 C 0.085 3.915 17 C -0.443 4.443 18 H 0.095 0.905 19 C 0.084 3.916 20 N -0.801 5.801 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.243 1.243 25 C -0.158 4.158 26 N -0.485 5.485 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 -20.082 0.043 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C 0.023 3.977 4 N -0.383 5.383 5 C 0.304 3.696 6 O -0.395 6.395 7 C -0.086 4.086 8 C -0.093 4.093 9 N -0.098 5.098 10 O 0.021 5.979 11 C 0.047 3.953 12 C -0.014 4.014 13 C -0.206 4.206 14 C -0.101 4.101 15 C -0.233 4.233 16 C 0.082 3.918 17 C -0.471 4.471 18 H 0.113 0.887 19 C -0.136 4.136 20 N -0.425 5.425 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.166 1.166 25 C -0.180 4.180 26 N -0.218 5.218 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.703 -19.455 -0.195 23.235 hybrid contribution 0.745 -0.625 0.275 1.011 sum -11.958 -20.080 0.080 23.371 Atomic orbital electron populations 1.24004 0.95797 1.02504 0.98006 1.22999 0.96232 0.98044 1.02195 1.20422 0.91793 0.95625 0.89856 1.45865 1.41314 1.19950 1.31169 1.20295 0.80758 0.82459 0.86132 1.90792 1.67141 1.35045 1.46561 1.19776 0.97103 0.92520 0.99153 1.24616 0.92400 0.96118 0.96208 1.74500 1.13240 0.98705 1.23316 1.85372 1.25089 1.34700 1.52746 1.26862 0.91238 0.88185 0.89007 1.17101 0.89065 0.93140 1.02090 1.20376 0.95947 0.99620 1.04689 1.20547 0.96342 0.94335 0.98839 1.21276 1.02165 0.95735 1.04084 1.17588 0.90889 0.93089 0.90254 1.19485 0.94353 0.93550 1.39676 0.88713 1.26164 1.00670 0.95541 0.91235 1.69693 1.25227 1.13490 1.34054 0.86346 0.79468 0.81849 0.78887 1.19425 1.21563 1.16564 1.21235 1.01248 0.91722 1.03767 1.72044 1.13343 1.12957 1.23460 0.87807 0.88111 0.86570 0.90971 0.90443 0.76311 0.85665 0.86204 0.87084 0.87643 0.87563 0.90243 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 14.32 29.02 0.42 -0.40 16 2 C -0.18 -0.96 9.63 -36.02 -0.35 -1.31 16 3 C 0.15 1.19 6.11 -5.19 -0.03 1.16 16 4 N -0.73 -6.00 5.55 -61.47 -0.34 -6.34 16 5 C 0.52 6.52 7.82 -10.99 -0.09 6.44 16 6 O -0.52 -9.40 16.03 5.56 0.09 -9.31 16 7 C -0.04 -0.49 6.33 -29.03 -0.18 -0.67 16 8 C 0.18 3.09 6.69 -156.55 -1.05 2.04 16 9 N -0.39 -7.31 12.15 31.19 0.38 -6.93 16 10 O 0.08 1.59 11.12 16.67 0.19 1.78 16 11 C 0.26 5.36 8.01 -13.84 -0.11 5.25 16 12 C -0.01 -0.24 5.87 -105.05 -0.62 -0.86 16 13 C -0.19 -3.81 9.71 -38.91 -0.38 -4.19 16 14 C -0.08 -1.68 10.01 -39.72 -0.40 -2.08 16 15 C -0.21 -4.82 7.17 -38.80 -0.28 -5.10 16 16 C 0.08 2.05 5.10 -106.87 -0.55 1.50 16 17 C -0.44 -11.41 9.57 -37.74 -0.36 -11.78 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 19 C 0.08 2.10 5.40 -17.35 -0.09 2.00 16 20 N -0.80 -20.54 13.93 55.55 0.77 -19.76 16 21 Si 0.91 19.67 24.52 -169.99 -4.17 15.50 16 22 H -0.27 -5.59 6.71 56.52 0.38 -5.21 16 23 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.24 -5.35 6.86 56.52 0.39 -4.97 16 25 C -0.16 -3.57 9.47 -38.45 -0.36 -3.94 16 26 N -0.48 -9.36 11.25 -10.16 -0.11 -9.47 16 27 H 0.10 0.37 8.06 -52.49 -0.42 -0.06 16 28 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 29 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 31 H 0.08 0.72 8.14 -51.94 -0.42 0.30 16 32 H 0.40 1.88 8.46 -40.82 -0.35 1.53 16 33 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.11 2.13 7.87 -52.48 -0.41 1.71 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.11 2.37 4.72 -52.49 -0.25 2.13 16 38 H 0.29 6.64 8.30 -40.82 -0.34 6.31 16 39 H 0.12 2.47 7.94 -52.49 -0.42 2.06 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -31.25 345.99 -6.78 -38.03 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.37 Total: 3.22 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -4.43 Total: -11.94 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.70 Total: -42.50 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.27 Total: -7.53 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.17 Total: 15.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.25 -6.78 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350727587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.850 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds