Wall clock time and date at job start Tue Mar 31 2020 11:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00019 * 2 1 4 4 N 1.46504 * 109.47214 * 124.99770 * 3 2 1 5 5 C 1.34774 * 119.99746 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00059 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99551 * 179.97438 * 5 4 3 8 8 C 1.50703 * 109.47020 * 180.02562 * 7 5 4 9 9 N 1.30035 * 126.18515 * 89.97336 * 8 7 5 10 10 O 1.21291 * 110.48039 * 179.97438 * 9 8 7 11 11 C 1.34195 * 109.69445 * 0.02562 * 10 9 8 12 12 C 1.47843 * 126.67233 * 179.97438 * 11 10 9 13 13 C 1.39935 * 120.02683 * 180.27465 * 12 11 10 14 14 C 1.38331 * 120.36013 * 180.25944 * 13 12 11 15 15 C 1.37753 * 120.40880 * 359.76875 * 14 13 12 16 16 C 1.40765 * 120.03941 * 359.97438 * 15 14 13 17 17 C 1.41430 * 120.17500 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99558 * 150.18182 * 17 16 15 19 19 C 1.39925 * 120.00088 * 330.17439 * 17 16 15 20 20 N 1.30831 * 119.99598 * 161.73187 * 19 17 16 21 21 Si 1.86800 * 120.00223 * 341.73326 * 19 17 16 22 22 H 1.48496 * 109.47179 * 95.41303 * 21 19 17 23 23 H 1.48501 * 109.47009 * 215.41106 * 21 19 17 24 24 H 1.48503 * 109.47020 * 335.41375 * 21 19 17 25 25 C 1.38987 * 120.02760 * 0.02562 * 12 11 10 26 26 N 1.32105 * 106.65113 * 0.25574 * 11 10 9 27 27 H 1.08001 * 120.00066 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00010 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46760 * 5.00286 * 3 2 1 31 31 H 1.08989 * 109.47104 * 244.99992 * 3 2 1 32 32 H 0.97001 * 119.99548 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.46887 * 60.00600 * 7 5 4 34 34 H 1.09000 * 109.47079 * 300.00178 * 7 5 4 35 35 H 1.08003 * 119.81884 * 0.02562 * 13 12 11 36 36 H 1.08000 * 119.79525 * 179.74719 * 14 13 12 37 37 H 1.07990 * 119.98253 * 179.97438 * 15 14 13 38 38 H 0.97010 * 119.99527 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.20351 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 3.7789 2.4087 1.3329 6 8 3.7151 3.3555 0.5777 7 6 4.7354 2.4365 2.4971 8 6 5.4890 3.7415 2.4970 9 7 5.1279 4.8366 3.0982 10 8 5.9451 5.7130 2.9105 11 6 6.9420 5.2452 2.1435 12 6 8.1309 5.9956 1.6861 13 6 9.0877 5.3681 0.8805 14 6 10.2054 6.0621 0.4531 15 6 10.3872 7.3797 0.8113 16 6 9.4327 8.0292 1.6167 17 6 9.6163 9.3821 1.9857 18 1 8.7589 10.0155 2.1594 19 6 10.9086 9.8999 2.1260 20 7 11.0999 11.1941 2.1108 21 14 12.3607 8.7435 2.3348 22 1 12.9935 8.4999 1.0136 23 1 13.3533 9.3563 3.2536 24 1 11.8895 7.4549 2.9030 25 6 8.2965 7.3262 2.0516 26 7 6.6512 3.9855 1.8717 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 3.0445 0.5748 1.7356 33 1 5.4400 1.6097 2.4082 34 1 4.1772 2.3397 3.4283 35 1 8.9547 4.3353 0.5941 36 1 10.9402 5.5677 -0.1650 37 1 11.2625 7.9148 0.4741 38 1 11.9958 11.5531 2.2084 39 1 7.5584 7.8159 2.6696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350727587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:46 Heat of formation + Delta-G solvation = 46.227275 kcal Electronic energy + Delta-G solvation = -23896.475002 eV Core-core repulsion = 20192.642461 eV Total energy + Delta-G solvation = -3703.832541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.54160 -40.91634 -39.75441 -37.22975 -36.73004 -35.74897 -34.44930 -33.86258 -32.31247 -31.74147 -30.66966 -27.28565 -26.99463 -25.59388 -24.32035 -22.57056 -22.34963 -21.71121 -20.87089 -19.65291 -19.24885 -18.38256 -18.01573 -17.71689 -17.43950 -16.77422 -16.57194 -16.33141 -15.77324 -15.57869 -14.97730 -14.85448 -14.67076 -14.49517 -14.24771 -14.01907 -13.75019 -13.55881 -13.51150 -13.11911 -12.97000 -12.76627 -12.64949 -12.38676 -12.11728 -12.07828 -11.74492 -11.56961 -11.52298 -11.20552 -11.00960 -10.59082 -10.14013 -9.66331 -9.45019 -8.90074 -6.54385 -0.47691 0.67522 0.71482 1.13826 1.29517 1.38135 1.43913 1.44633 1.54891 1.68667 2.13777 2.21004 2.57284 2.59343 2.93917 3.39653 3.65593 3.81429 3.90262 4.12044 4.17658 4.24487 4.32751 4.41410 4.51924 4.56833 4.68117 4.74327 4.78087 4.86468 4.93285 4.98771 5.12275 5.24633 5.39506 5.62048 5.62714 5.72436 5.75861 5.82875 6.06777 6.29318 6.40759 6.61166 6.75025 7.02275 7.10249 8.17970 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.035652 B = 0.002341 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.180854 B =11959.387594 C =12159.608349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.178 4.178 3 C 0.143 3.857 4 N -0.705 5.705 5 C 0.517 3.483 6 O -0.586 6.586 7 C -0.044 4.044 8 C 0.188 3.812 9 N -0.403 5.403 10 O 0.061 5.939 11 C 0.248 3.752 12 C -0.015 4.015 13 C -0.169 4.169 14 C -0.077 4.077 15 C -0.218 4.218 16 C 0.071 3.929 17 C -0.481 4.481 18 H 0.059 0.941 19 C 0.048 3.952 20 N -0.844 5.844 21 Si 0.961 3.039 22 H -0.248 1.248 23 H -0.278 1.278 24 H -0.249 1.249 25 C -0.173 4.173 26 N -0.487 5.487 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.424 0.576 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.112 0.888 38 H 0.296 0.704 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 -24.651 -0.187 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.020 3.980 4 N -0.358 5.358 5 C 0.303 3.697 6 O -0.466 6.466 7 C -0.084 4.084 8 C -0.086 4.086 9 N -0.115 5.115 10 O 0.007 5.993 11 C 0.032 3.968 12 C -0.017 4.017 13 C -0.190 4.190 14 C -0.095 4.095 15 C -0.237 4.237 16 C 0.068 3.932 17 C -0.510 4.510 18 H 0.077 0.923 19 C -0.168 4.168 20 N -0.469 5.469 21 Si 0.784 3.216 22 H -0.173 1.173 23 H -0.205 1.205 24 H -0.172 1.172 25 C -0.195 4.195 26 N -0.221 5.221 27 H 0.141 0.859 28 H 0.113 0.887 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.262 0.738 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.484 -24.058 -0.405 27.107 hybrid contribution 0.423 0.556 0.298 0.759 sum -12.061 -23.502 -0.107 26.416 Atomic orbital electron populations 1.24189 0.95741 1.03222 0.96658 1.22921 0.96255 0.97167 1.03292 1.20438 0.91476 0.96911 0.89154 1.45704 1.39673 1.19356 1.31076 1.20561 0.80989 0.82391 0.85748 1.90778 1.69346 1.37562 1.48931 1.20167 0.97520 0.90504 1.00231 1.25608 0.91595 0.97446 0.93958 1.74501 1.13236 0.99245 1.24497 1.85363 1.25342 1.35528 1.53092 1.26755 0.91341 0.88815 0.89854 1.17234 0.89810 0.92682 1.01988 1.20765 0.95069 1.00462 1.02668 1.20969 0.96896 0.93334 0.98307 1.21454 1.01829 0.96831 1.03629 1.17696 0.92034 0.92645 0.90795 1.19437 0.94055 0.94475 1.43016 0.92327 1.26863 1.02563 0.96804 0.90538 1.69724 1.26336 1.14844 1.36035 0.85546 0.76707 0.79568 0.79809 1.17327 1.20452 1.17205 1.21255 1.01163 0.92589 1.04448 1.72044 1.14364 1.12210 1.23442 0.85885 0.88667 0.84587 0.92487 0.91868 0.73811 0.81948 0.82468 0.84869 0.83390 0.87081 0.89390 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 14.32 67.78 0.97 -0.22 16 2 C -0.18 -1.49 9.63 25.65 0.25 -1.24 16 3 C 0.14 2.15 6.11 85.63 0.52 2.67 16 4 N -0.70 -9.78 5.55 -466.79 -2.59 -12.37 16 5 C 0.52 11.96 7.82 87.66 0.69 12.65 16 6 O -0.59 -21.02 16.03 -3.02 -0.05 -21.07 16 7 C -0.04 -0.82 6.33 29.10 0.18 -0.64 16 8 C 0.19 6.08 6.69 138.53 0.93 7.01 16 9 N -0.40 -14.93 12.15 -58.64 -0.71 -15.64 16 10 O 0.06 2.47 11.12 69.70 0.78 3.24 16 11 C 0.25 10.03 8.01 87.31 0.70 10.73 16 12 C -0.01 -0.62 5.87 -20.14 -0.12 -0.74 16 13 C -0.17 -6.49 9.71 22.70 0.22 -6.27 16 14 C -0.08 -2.90 10.01 22.18 0.22 -2.68 16 15 C -0.22 -9.57 7.17 22.77 0.16 -9.41 16 16 C 0.07 3.50 5.10 -21.32 -0.11 3.39 16 17 C -0.48 -26.24 9.57 23.47 0.22 -26.02 16 18 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 19 C 0.05 2.47 5.40 85.25 0.46 2.93 16 20 N -0.84 -45.03 13.93 21.82 0.30 -44.73 16 21 Si 0.96 40.17 24.52 68.60 1.68 41.86 16 22 H -0.25 -9.53 6.71 99.48 0.67 -8.86 16 23 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 24 H -0.25 -10.52 6.86 99.48 0.68 -9.84 16 25 C -0.17 -8.05 9.47 23.00 0.22 -7.84 16 26 N -0.49 -17.93 11.25 -302.75 -3.40 -21.34 16 27 H 0.12 0.47 8.06 -2.91 -0.02 0.45 16 28 H 0.09 0.81 7.84 -2.91 -0.02 0.79 16 29 H 0.14 0.63 8.06 -2.91 -0.02 0.61 16 30 H 0.06 1.04 7.79 -2.38 -0.02 1.02 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.42 2.30 8.46 -92.71 -0.78 1.51 16 33 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.13 4.57 7.87 -2.91 -0.02 4.55 16 36 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.11 4.76 4.72 -2.92 -0.01 4.75 16 38 H 0.30 14.09 8.30 -92.70 -0.77 13.32 16 39 H 0.11 5.08 7.94 -2.91 -0.02 5.05 16 Total: -1.00 -71.95 345.99 1.77 -70.18 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.25 Total: 15.54 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.52 Total: -15.67 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -6.40 Total: -94.07 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.73 Total: -17.83 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.68 Total: 41.86 kcal Total: -71.95 1.77 -70.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350727587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.407 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds