Wall clock time and date at job start Tue Mar 31 2020 10:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47550 * 270.00188 * 3 2 1 5 5 H 1.48505 * 109.47278 * 30.00585 * 3 2 1 6 6 H 1.48508 * 109.47102 * 150.00116 * 3 2 1 7 7 C 1.37874 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99852 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.39915 * 119.99768 * 185.26381 * 13 11 10 15 15 C 1.39334 * 120.79383 * 32.49746 * 14 13 11 16 16 N 1.32108 * 119.11230 * 179.97438 * 15 14 13 17 17 C 1.32604 * 120.81312 * 359.97438 * 16 15 14 18 18 C 1.48293 * 119.13440 * 179.97438 * 17 16 15 19 19 C 1.39430 * 120.10089 * 0.02562 * 18 17 16 20 20 C 1.38011 * 119.98982 * 179.97438 * 19 18 17 21 21 C 1.38267 * 120.18173 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.19846 * 0.02562 * 21 20 19 23 23 O 1.35907 * 119.99095 * 180.02562 * 22 21 20 24 24 C 1.38535 * 120.01232 * 359.75005 * 22 21 20 25 25 N 1.32596 * 121.73220 * 359.97438 * 17 16 15 26 26 C 1.32110 * 120.81544 * 0.02562 * 25 17 16 27 27 H 0.96998 * 119.99839 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47194 * 60.00272 * 9 7 2 29 29 H 1.09000 * 109.46863 * 300.00154 * 9 7 2 30 30 H 1.08995 * 109.47320 * 59.99942 * 10 9 7 31 31 H 1.09000 * 109.47168 * 299.99559 * 10 9 7 32 32 H 0.96994 * 120.00006 * 5.25784 * 13 11 10 33 33 H 1.08000 * 120.44684 * 359.95425 * 15 14 13 34 34 H 1.08006 * 120.00134 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.90834 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.89924 * 180.02562 * 21 20 19 37 37 H 0.96692 * 113.99726 * 90.00279 * 23 22 21 38 38 H 1.07998 * 120.09152 * 180.25989 * 24 22 21 39 39 H 1.07996 * 120.44747 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1344 -0.0008 14 6 1.4707 -7.3435 -0.1125 15 6 0.2956 -7.4245 -0.8567 16 7 -0.3336 -8.5832 -0.9403 17 6 0.1406 -9.6594 -0.3277 18 6 -0.5961 -10.9409 -0.4461 19 6 -1.7710 -11.0056 -1.1940 20 6 -2.4545 -12.1996 -1.3031 21 6 -1.9772 -13.3339 -0.6727 22 6 -0.8085 -13.2782 0.0738 23 8 -0.3429 -14.3958 0.6913 24 6 -0.1134 -12.0850 0.1849 25 7 1.2561 -9.6198 0.3880 26 6 1.9384 -8.4958 0.5161 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8721 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 3.1326 -6.1361 0.0769 33 1 -0.0960 -6.5518 -1.3582 34 1 -2.1462 -10.1214 -1.6880 35 1 -3.3647 -12.2481 -1.8824 36 1 -2.5155 -14.2659 -0.7614 37 1 0.2615 -14.9214 0.1497 38 1 0.7984 -12.0412 0.7620 39 1 2.8465 -8.4704 1.1001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360161160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:31 Heat of formation + Delta-G solvation = -9.216737 kcal Electronic energy + Delta-G solvation = -23598.381131 eV Core-core repulsion = 19892.144357 eV Total energy + Delta-G solvation = -3706.236774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45193 -39.95820 -39.32223 -36.99207 -35.26603 -33.93652 -33.61452 -32.33955 -31.20285 -30.17582 -29.17055 -26.09305 -25.03816 -24.47992 -22.65142 -22.27193 -21.55869 -20.12357 -18.91246 -18.06384 -17.41363 -16.98266 -16.83940 -16.38449 -15.83427 -15.57514 -15.30911 -15.13158 -14.79930 -14.51539 -14.15164 -13.80783 -13.68812 -13.56726 -12.82787 -12.53424 -12.36492 -12.31103 -11.86626 -11.75340 -11.32111 -11.15902 -11.00386 -10.99249 -10.85701 -10.68271 -10.12326 -9.88581 -9.63335 -9.50779 -9.24803 -9.15792 -8.97231 -8.42012 -8.20890 -6.05242 -4.10562 0.18104 0.94317 1.01890 1.34742 2.79358 2.94828 3.25887 3.27794 3.34562 3.36499 3.54340 3.79613 3.91221 4.10066 4.33934 4.40364 4.66490 4.71689 4.74811 4.92519 5.06523 5.22981 5.28824 5.30129 5.47506 5.58763 5.71925 5.83238 5.98882 6.00590 6.11077 6.15226 6.26745 6.40841 6.45687 6.65934 6.85066 7.32694 7.33254 7.62354 7.70020 7.89718 7.94362 8.19277 8.34614 8.96935 9.53858 11.05537 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.041229 B = 0.002034 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.976918 B =13764.665920 C =14292.613554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.127 4.127 11 C 0.510 3.490 12 O -0.509 6.509 13 N -0.674 5.674 14 C 0.060 3.940 15 C 0.150 3.850 16 N -0.486 5.486 17 C 0.320 3.680 18 C -0.019 4.019 19 C -0.082 4.082 20 C -0.112 4.112 21 C -0.131 4.131 22 C 0.093 3.907 23 O -0.497 6.497 24 C -0.101 4.101 25 N -0.491 5.491 26 C 0.119 3.881 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.414 0.586 33 H 0.183 0.817 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.389 0.611 38 H 0.142 0.858 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -26.415 -2.563 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.167 4.167 11 C 0.300 3.700 12 O -0.381 6.381 13 N -0.321 5.321 14 C -0.040 4.040 15 C -0.020 4.020 16 N -0.199 5.199 17 C 0.055 3.945 18 C -0.021 4.021 19 C -0.102 4.102 20 C -0.131 4.131 21 C -0.150 4.150 22 C 0.048 3.952 23 O -0.307 6.307 24 C -0.122 4.122 25 N -0.203 5.203 26 C -0.051 4.051 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.251 0.749 33 H 0.200 0.800 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.245 0.755 38 H 0.160 0.840 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.328 -26.810 -2.171 26.930 hybrid contribution 1.779 1.647 -0.132 2.428 sum 3.107 -25.163 -2.304 25.459 Atomic orbital electron populations 1.69987 1.06074 1.26780 1.49784 1.25027 0.94851 0.99335 0.95141 0.86567 0.79745 0.83369 0.78118 1.20618 1.21176 1.19864 1.21165 0.92951 0.90828 1.51930 0.92482 1.18941 0.93115 0.89289 0.98842 1.21945 1.00917 0.90658 1.03193 1.22066 0.88916 0.85358 0.73650 1.90710 1.14347 1.87042 1.46023 1.43902 1.10931 1.03502 1.73805 1.19757 0.97250 0.88756 0.98283 1.23474 0.90638 0.95511 0.92380 1.68336 1.32178 0.98794 1.20614 1.21074 0.89334 0.92204 0.91863 1.17855 0.95081 0.89325 0.99876 1.21399 0.93315 0.98672 0.96812 1.21009 1.00197 0.91974 0.99876 1.21578 0.96839 0.99658 0.96909 1.18302 0.94278 0.86780 0.95810 1.84854 1.66598 1.35855 1.43421 1.21545 1.00544 0.91293 0.98773 1.68193 1.07263 1.28004 1.16879 1.23030 0.99813 0.86937 0.95305 0.92820 0.95618 0.95666 0.89544 0.89399 0.74891 0.79973 0.84094 0.84959 0.85251 0.75533 0.83999 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.04 0.89 4.26 -27.88 -0.12 0.78 16 10 C -0.13 -2.27 5.64 -27.88 -0.16 -2.43 16 11 C 0.51 8.55 7.60 -10.99 -0.08 8.46 16 12 O -0.51 -10.66 13.68 5.55 0.08 -10.59 16 13 N -0.67 -8.14 5.36 -9.64 -0.05 -8.19 16 14 C 0.06 0.78 6.34 -83.35 -0.53 0.26 16 15 C 0.15 2.24 9.93 -17.03 -0.17 2.07 16 16 N -0.49 -7.20 9.43 -11.00 -0.10 -7.31 16 17 C 0.32 4.44 7.55 -156.94 -1.19 3.25 16 18 C -0.02 -0.23 5.87 -104.93 -0.62 -0.85 16 19 C -0.08 -0.88 9.56 -39.22 -0.37 -1.25 16 20 C -0.11 -0.96 10.03 -39.65 -0.40 -1.35 16 21 C -0.13 -1.09 9.98 -39.37 -0.39 -1.48 16 22 C 0.09 0.88 6.70 -39.27 -0.26 0.61 16 23 O -0.50 -4.05 13.50 -19.45 -0.26 -4.31 16 24 C -0.10 -1.10 9.50 -39.08 -0.37 -1.47 16 25 N -0.49 -6.35 9.43 -11.00 -0.10 -6.45 16 26 C 0.12 1.34 11.25 -17.02 -0.19 1.15 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.41 3.34 8.82 -40.82 -0.36 2.98 16 33 H 0.18 2.91 6.46 -52.49 -0.34 2.57 16 34 H 0.14 1.51 7.50 -52.48 -0.39 1.11 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.39 1.23 9.06 45.56 0.41 1.64 16 38 H 0.14 1.52 7.50 -52.49 -0.39 1.13 16 39 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -35.08 346.40 -8.34 -43.42 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.57 Total: 3.38 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -5.26 Total: -5.34 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.48 Total: -47.77 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.19 Total: -14.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.08 -8.34 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360161160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.207 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds