Wall clock time and date at job start Tue Mar 31 2020 10:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47550 * 270.00188 * 3 2 1 5 5 H 1.48505 * 109.47278 * 30.00585 * 3 2 1 6 6 H 1.48508 * 109.47102 * 150.00116 * 3 2 1 7 7 C 1.37874 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99852 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.39915 * 119.99768 * 185.26381 * 13 11 10 15 15 C 1.39334 * 120.79383 * 32.49746 * 14 13 11 16 16 N 1.32108 * 119.11230 * 179.97438 * 15 14 13 17 17 C 1.32604 * 120.81312 * 359.97438 * 16 15 14 18 18 C 1.48293 * 119.13440 * 179.97438 * 17 16 15 19 19 C 1.39430 * 120.10089 * 0.02562 * 18 17 16 20 20 C 1.38011 * 119.98982 * 179.97438 * 19 18 17 21 21 C 1.38267 * 120.18173 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.19846 * 0.02562 * 21 20 19 23 23 O 1.35907 * 119.99095 * 180.02562 * 22 21 20 24 24 C 1.38535 * 120.01232 * 359.75005 * 22 21 20 25 25 N 1.32596 * 121.73220 * 359.97438 * 17 16 15 26 26 C 1.32110 * 120.81544 * 0.02562 * 25 17 16 27 27 H 0.96998 * 119.99839 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47194 * 60.00272 * 9 7 2 29 29 H 1.09000 * 109.46863 * 300.00154 * 9 7 2 30 30 H 1.08995 * 109.47320 * 59.99942 * 10 9 7 31 31 H 1.09000 * 109.47168 * 299.99559 * 10 9 7 32 32 H 0.96994 * 120.00006 * 5.25784 * 13 11 10 33 33 H 1.08000 * 120.44684 * 359.95425 * 15 14 13 34 34 H 1.08006 * 120.00134 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.90834 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.89924 * 180.02562 * 21 20 19 37 37 H 0.96692 * 113.99726 * 90.00279 * 23 22 21 38 38 H 1.07998 * 120.09152 * 180.25989 * 24 22 21 39 39 H 1.07996 * 120.44747 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1344 -0.0008 14 6 1.4707 -7.3435 -0.1125 15 6 0.2956 -7.4245 -0.8567 16 7 -0.3336 -8.5832 -0.9403 17 6 0.1406 -9.6594 -0.3277 18 6 -0.5961 -10.9409 -0.4461 19 6 -1.7710 -11.0056 -1.1940 20 6 -2.4545 -12.1996 -1.3031 21 6 -1.9772 -13.3339 -0.6727 22 6 -0.8085 -13.2782 0.0738 23 8 -0.3429 -14.3958 0.6913 24 6 -0.1134 -12.0850 0.1849 25 7 1.2561 -9.6198 0.3880 26 6 1.9384 -8.4958 0.5161 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8721 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 3.1326 -6.1361 0.0769 33 1 -0.0960 -6.5518 -1.3582 34 1 -2.1462 -10.1214 -1.6880 35 1 -3.3647 -12.2481 -1.8824 36 1 -2.5155 -14.2659 -0.7614 37 1 0.2615 -14.9214 0.1497 38 1 0.7984 -12.0412 0.7620 39 1 2.8465 -8.4704 1.1001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360161160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:30 Heat of formation + Delta-G solvation = -34.848433 kcal Electronic energy + Delta-G solvation = -23599.492604 eV Core-core repulsion = 19892.144357 eV Total energy + Delta-G solvation = -3707.348248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50320 -40.96668 -40.32872 -37.70728 -36.45343 -35.59385 -34.94594 -33.45113 -32.79234 -30.99422 -30.18649 -27.81036 -26.08517 -25.63326 -23.80482 -23.29710 -22.70915 -21.49060 -19.65163 -19.28897 -18.68691 -18.39145 -17.78650 -17.40495 -17.15069 -16.58418 -16.45766 -16.22759 -16.08612 -15.86372 -15.20410 -14.92240 -14.73938 -14.48096 -14.34467 -14.22376 -13.43406 -13.27457 -13.04759 -12.83438 -12.79209 -12.63511 -12.48153 -12.25877 -12.06083 -11.92873 -11.66206 -11.52916 -11.31727 -11.00467 -10.57248 -10.53124 -10.17877 -9.72639 -9.18708 -8.18250 -6.31700 -0.77208 -0.07707 0.29116 0.47998 1.43324 1.45194 1.50788 1.55940 1.82449 2.42634 2.43497 2.63014 2.89917 2.98340 3.15706 3.33907 3.36497 3.65894 3.87524 3.99858 4.02082 4.20968 4.29198 4.46315 4.49266 4.54327 4.65679 4.72710 4.87595 4.98522 5.06616 5.29474 5.37554 5.41127 5.49024 5.51038 5.62547 5.75405 5.84790 5.86034 6.16416 6.27985 6.85336 6.86648 6.88218 7.05851 7.38838 8.94130 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.041229 B = 0.002034 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.976918 B =13764.665920 C =14292.613554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.038 3.962 10 C -0.114 4.114 11 C 0.515 3.485 12 O -0.561 6.561 13 N -0.645 5.645 14 C 0.050 3.950 15 C 0.129 3.871 16 N -0.506 5.506 17 C 0.314 3.686 18 C -0.045 4.045 19 C -0.096 4.096 20 C -0.106 4.106 21 C -0.124 4.124 22 C 0.095 3.905 23 O -0.505 6.505 24 C -0.109 4.109 25 N -0.498 5.498 26 C 0.140 3.860 27 H 0.262 0.738 28 H -0.015 1.015 29 H -0.016 1.016 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.438 0.562 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.411 0.589 38 H 0.139 0.861 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -28.215 -2.159 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.001 3.999 10 C -0.154 4.154 11 C 0.306 3.694 12 O -0.438 6.438 13 N -0.294 5.294 14 C -0.051 4.051 15 C -0.039 4.039 16 N -0.220 5.220 17 C 0.050 3.950 18 C -0.047 4.047 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.143 4.143 22 C 0.050 3.950 23 O -0.319 6.319 24 C -0.130 4.130 25 N -0.210 5.210 26 C -0.030 4.030 27 H 0.070 0.930 28 H 0.004 0.996 29 H 0.002 0.998 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.279 0.721 33 H 0.179 0.821 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.174 0.826 37 H 0.271 0.729 38 H 0.157 0.843 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.916 -28.662 -1.784 28.983 hybrid contribution 0.962 2.011 -0.256 2.244 sum 4.877 -26.651 -2.040 27.170 Atomic orbital electron populations 1.70170 1.08279 1.27746 1.51565 1.26117 0.95686 1.03930 0.94810 0.85352 0.78730 0.77918 0.78430 1.19849 1.21541 1.17775 1.21717 0.94140 0.91464 1.50532 0.90254 1.18734 0.93805 0.92403 0.94998 1.21681 0.99311 0.88419 1.05962 1.21780 0.88057 0.86374 0.73183 1.90712 1.16575 1.87773 1.48714 1.43374 1.11831 1.01904 1.72298 1.19734 0.97004 0.89412 0.98916 1.23307 0.91938 0.95204 0.93497 1.68307 1.32895 0.99107 1.21661 1.21518 0.89668 0.92537 0.91308 1.17998 0.95987 0.89139 1.01537 1.21466 0.93481 0.99480 0.97167 1.21305 1.00593 0.91026 0.99463 1.21889 0.96240 1.00556 0.95641 1.18375 0.94451 0.86721 0.95411 1.84798 1.67296 1.35505 1.44274 1.21557 1.00805 0.91564 0.99048 1.68322 1.07217 1.28502 1.16993 1.23724 1.00231 0.85347 0.93719 0.92952 0.99616 0.99802 0.86604 0.86573 0.72066 0.82081 0.85026 0.82279 0.82563 0.72933 0.84288 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.54 -29.21 9.11 25.60 0.23 -28.98 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.04 1.99 4.26 29.85 0.13 2.12 16 10 C -0.11 -3.96 5.64 29.85 0.17 -3.79 16 11 C 0.52 17.31 7.60 87.66 0.67 17.98 16 12 O -0.56 -24.87 13.68 -3.06 -0.04 -24.91 16 13 N -0.65 -14.54 5.36 -302.80 -1.62 -16.17 16 14 C 0.05 1.26 6.34 38.38 0.24 1.50 16 15 C 0.13 4.05 9.93 84.92 0.84 4.90 16 16 N -0.51 -15.77 9.43 -188.72 -1.78 -17.55 16 17 C 0.31 8.85 7.55 137.53 1.04 9.89 16 18 C -0.04 -1.09 5.87 -20.06 -0.12 -1.21 16 19 C -0.10 -2.07 9.56 22.50 0.22 -1.85 16 20 C -0.11 -1.63 10.03 22.22 0.22 -1.41 16 21 C -0.12 -1.77 9.98 22.41 0.22 -1.55 16 22 C 0.09 1.63 6.70 22.47 0.15 1.78 16 23 O -0.51 -7.06 13.50 -92.51 -1.25 -8.31 16 24 C -0.11 -2.30 9.50 22.59 0.21 -2.09 16 25 N -0.50 -12.40 9.43 -188.71 -1.78 -14.18 16 26 C 0.14 2.86 11.25 84.92 0.96 3.81 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H -0.01 -0.87 8.10 -2.39 -0.02 -0.88 16 29 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 30 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 31 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.44 5.56 8.82 -92.71 -0.82 4.74 16 33 H 0.16 5.67 6.46 -2.91 -0.02 5.66 16 34 H 0.13 2.99 7.50 -2.91 -0.02 2.97 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.41 1.54 9.06 -74.06 -0.67 0.87 16 38 H 0.14 2.90 7.50 -2.91 -0.02 2.88 16 39 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -81.33 346.40 1.11 -80.22 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -0.37 Total: 12.60 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.65 Total: 1.11 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -4.90 Total: -105.81 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.29 Total: -33.22 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -81.33 1.11 -80.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360161160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.372 kcal (2) G-P(sol) polarization free energy of solvation -81.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds