Wall clock time and date at job start Tue Mar 31 2020 10:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00169 * 2 1 4 4 H 1.48504 * 109.46896 * 270.00211 * 3 2 1 5 5 H 1.48498 * 109.46963 * 29.99724 * 3 2 1 6 6 H 1.48497 * 109.47279 * 149.99573 * 3 2 1 7 7 C 1.37883 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99859 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00032 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47236 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99807 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.00025 * 175.40934 * 13 11 10 15 15 C 1.38929 * 120.04364 * 214.82731 * 14 13 11 16 16 C 1.38125 * 120.04452 * 179.74742 * 15 14 13 17 17 C 1.38213 * 120.12479 * 0.54973 * 16 15 14 18 18 C 1.38770 * 120.08111 * 359.70213 * 17 16 15 19 19 O 1.35893 * 120.01814 * 179.97438 * 18 17 16 20 20 C 1.35694 * 118.00416 * 255.13717 * 19 18 17 21 21 C 1.39277 * 120.14426 * 175.00936 * 20 19 18 22 22 C 1.38635 * 117.91968 * 179.97438 * 21 20 19 23 23 C 1.38756 * 118.02225 * 359.97438 * 22 21 20 24 24 N 1.31822 * 119.97917 * 359.97438 * 23 22 21 25 25 N 1.28352 * 122.25870 * 359.73685 * 24 23 22 26 26 C 1.38640 * 119.96175 * 0.02562 * 18 17 16 27 27 H 0.97002 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47292 * 59.99619 * 9 7 2 29 29 H 1.09007 * 109.47109 * 299.99883 * 9 7 2 30 30 H 1.08991 * 109.46927 * 299.99642 * 10 9 7 31 31 H 1.08999 * 109.46815 * 60.00108 * 10 9 7 32 32 H 0.96996 * 119.99955 * 355.40622 * 13 11 10 33 33 H 1.08006 * 119.97733 * 359.97438 * 15 14 13 34 34 H 1.07998 * 119.93737 * 180.27168 * 16 15 14 35 35 H 1.08006 * 119.95363 * 179.72397 * 17 16 15 36 36 H 1.07999 * 121.03901 * 359.95834 * 21 20 19 37 37 H 1.08003 * 120.99018 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.01419 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.06815 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5285 -2.6367 0.0009 12 8 6.1350 -1.5862 0.0005 13 7 6.2024 -3.8039 0.0014 14 6 7.5982 -3.8059 -0.0957 15 6 8.2458 -4.8210 -0.7887 16 6 9.6234 -4.8202 -0.8889 17 6 10.3618 -3.8164 -0.2909 18 6 9.7207 -2.8028 0.4070 19 8 10.4480 -1.8168 0.9948 20 6 10.5953 -1.8513 2.3433 21 6 11.4161 -0.9245 2.9812 22 6 11.5329 -1.0016 4.3604 23 6 10.8250 -1.9962 5.0200 24 7 10.0696 -2.8317 4.3350 25 7 9.9536 -2.7614 3.0587 26 6 8.3377 -2.7971 0.5050 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 3.6579 -3.1506 0.8907 31 1 3.6585 -3.1503 -0.8893 32 1 5.7197 -4.6425 0.0690 33 1 7.6715 -5.6094 -1.2524 34 1 10.1248 -5.6078 -1.4317 35 1 11.4392 -3.8209 -0.3673 36 1 11.9454 -0.1694 2.4189 37 1 12.1556 -0.3077 4.9055 38 1 10.8922 -2.0854 6.0942 39 1 7.8370 -2.0093 1.0481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360289401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:26 Heat of formation + Delta-G solvation = 24.683747 kcal Electronic energy + Delta-G solvation = -24442.763937 eV Core-core repulsion = 20737.997198 eV Total energy + Delta-G solvation = -3704.766739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68414 -40.49845 -39.48283 -37.73106 -34.55073 -33.57170 -33.56294 -32.10196 -31.47968 -30.30491 -29.49999 -26.19905 -25.25979 -24.75025 -23.21161 -22.47690 -21.16273 -19.85213 -19.43228 -17.94185 -17.40238 -17.13469 -16.77828 -16.58023 -16.29200 -15.96382 -15.32076 -14.96870 -14.71760 -14.60682 -14.12629 -13.83735 -13.59355 -13.39043 -13.22617 -12.94682 -12.59762 -12.43742 -11.94954 -11.72801 -11.60712 -11.44445 -11.01005 -10.67146 -10.34820 -10.22799 -10.10039 -9.96154 -9.82475 -9.61586 -9.29998 -9.22116 -8.86456 -8.53577 -8.17827 -6.05614 -4.04741 0.41685 0.64791 0.93169 1.24521 2.56213 2.92235 3.19540 3.24036 3.35923 3.42596 3.53029 3.73251 3.82593 4.07477 4.34063 4.46434 4.48425 4.69648 4.75504 4.96275 5.01290 5.14353 5.24720 5.29706 5.31423 5.39399 5.45556 5.66924 5.80629 5.96353 6.00100 6.12711 6.22378 6.23102 6.35735 6.60506 6.75973 7.17269 7.30407 7.37299 7.52940 7.74691 8.37488 8.38185 8.50224 8.96924 9.57110 11.07127 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003313 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.310370 B = 8449.220948 C = 9760.084753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.519 6.519 13 N -0.682 5.682 14 C 0.169 3.831 15 C -0.143 4.143 16 C -0.090 4.090 17 C -0.137 4.137 18 C 0.097 3.903 19 O -0.238 6.238 20 C 0.261 3.739 21 C -0.131 4.131 22 C -0.086 4.086 23 C 0.006 3.994 24 N -0.204 5.204 25 N -0.283 5.283 26 C -0.112 4.112 27 H 0.264 0.736 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.622 -8.735 5.031 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.092 0.908 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.393 6.393 13 N -0.328 5.328 14 C 0.074 3.926 15 C -0.164 4.164 16 C -0.108 4.108 17 C -0.157 4.157 18 C 0.055 3.945 19 O -0.140 6.140 20 C 0.077 3.923 21 C -0.161 4.161 22 C -0.114 4.114 23 C -0.160 4.160 24 N -0.047 5.047 25 N -0.139 5.139 26 C -0.132 4.132 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.249 0.751 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.194 0.806 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 25.862 -8.912 4.785 27.770 hybrid contribution 0.997 1.706 0.006 1.976 sum 26.859 -7.206 4.791 28.218 Atomic orbital electron populations 1.69908 1.06274 1.27017 1.50887 1.24964 0.94710 0.99208 0.94282 0.86806 0.80587 0.83448 0.78778 1.20184 1.21371 1.18627 1.21079 0.89113 0.94637 1.51549 0.90825 1.19389 0.96611 0.89925 0.97763 1.21713 0.86725 1.03739 1.03825 1.21869 0.91978 0.82389 0.73781 1.90663 1.70416 1.31358 1.46903 1.43858 1.04195 1.10773 1.74009 1.17571 0.83585 0.95689 0.95764 1.21027 0.95033 1.00082 1.00237 1.20713 0.93106 0.97868 0.99135 1.21019 1.00345 0.93097 1.01202 1.18320 0.89303 0.89403 0.97523 1.84626 1.67730 1.46572 1.15099 1.21721 0.92150 0.92854 0.85541 1.21571 0.99568 0.99912 0.95065 1.22335 0.97664 0.97953 0.93475 1.24284 0.95482 0.93444 1.02797 1.72868 1.12588 1.19991 0.99261 1.73213 1.19345 1.19927 1.01387 1.21424 0.92308 0.99993 0.99494 0.92662 0.95777 0.96171 0.89066 0.89060 0.75078 0.85051 0.84850 0.85439 0.82383 0.82374 0.80622 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.07 16 10 C -0.12 -2.28 5.64 -27.88 -0.16 -2.44 16 11 C 0.51 9.32 7.67 -10.98 -0.08 9.23 16 12 O -0.52 -11.49 13.42 5.54 0.07 -11.41 16 13 N -0.68 -9.59 5.34 -9.88 -0.05 -9.64 16 14 C 0.17 2.43 6.30 -83.72 -0.53 1.91 16 15 C -0.14 -1.59 9.96 -39.37 -0.39 -1.98 16 16 C -0.09 -0.90 10.03 -39.63 -0.40 -1.30 16 17 C -0.14 -1.60 9.98 -39.39 -0.39 -1.99 16 18 C 0.10 1.40 5.23 -39.24 -0.21 1.20 16 19 O -0.24 -3.35 9.98 -2.96 -0.03 -3.38 16 20 C 0.26 3.39 7.48 -16.94 -0.13 3.26 16 21 C -0.13 -1.18 10.16 -39.05 -0.40 -1.58 16 22 C -0.09 -0.58 10.20 -39.24 -0.40 -0.98 16 23 C 0.01 0.05 11.31 -17.36 -0.20 -0.14 16 24 N -0.20 -2.67 11.49 30.56 0.35 -2.31 16 25 N -0.28 -4.15 10.18 30.51 0.31 -3.84 16 26 C -0.11 -1.82 8.11 -39.24 -0.32 -2.14 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 29 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.41 4.24 8.82 -40.82 -0.36 3.88 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 38 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.15 2.80 6.22 -52.49 -0.33 2.48 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -37.22 343.78 -6.60 -43.82 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.42 Total: 1.15 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -4.12 Total: -10.37 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.38 Total: -42.98 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.04 Total: -14.79 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.22 -6.60 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360289401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.504 kcal (2) G-P(sol) polarization free energy of solvation -37.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds