Wall clock time and date at job start Tue Mar 31 2020 10:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00169 * 2 1 4 4 H 1.48504 * 109.46896 * 270.00211 * 3 2 1 5 5 H 1.48498 * 109.46963 * 29.99724 * 3 2 1 6 6 H 1.48497 * 109.47279 * 149.99573 * 3 2 1 7 7 C 1.37883 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99859 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00032 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47236 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99807 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.00025 * 175.40934 * 13 11 10 15 15 C 1.38929 * 120.04364 * 214.82731 * 14 13 11 16 16 C 1.38125 * 120.04452 * 179.74742 * 15 14 13 17 17 C 1.38213 * 120.12479 * 0.54973 * 16 15 14 18 18 C 1.38770 * 120.08111 * 359.70213 * 17 16 15 19 19 O 1.35893 * 120.01814 * 179.97438 * 18 17 16 20 20 C 1.35694 * 118.00416 * 255.13717 * 19 18 17 21 21 C 1.39277 * 120.14426 * 175.00936 * 20 19 18 22 22 C 1.38635 * 117.91968 * 179.97438 * 21 20 19 23 23 C 1.38756 * 118.02225 * 359.97438 * 22 21 20 24 24 N 1.31822 * 119.97917 * 359.97438 * 23 22 21 25 25 N 1.28352 * 122.25870 * 359.73685 * 24 23 22 26 26 C 1.38640 * 119.96175 * 0.02562 * 18 17 16 27 27 H 0.97002 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47292 * 59.99619 * 9 7 2 29 29 H 1.09007 * 109.47109 * 299.99883 * 9 7 2 30 30 H 1.08991 * 109.46927 * 299.99642 * 10 9 7 31 31 H 1.08999 * 109.46815 * 60.00108 * 10 9 7 32 32 H 0.96996 * 119.99955 * 355.40622 * 13 11 10 33 33 H 1.08006 * 119.97733 * 359.97438 * 15 14 13 34 34 H 1.07998 * 119.93737 * 180.27168 * 16 15 14 35 35 H 1.08006 * 119.95363 * 179.72397 * 17 16 15 36 36 H 1.07999 * 121.03901 * 359.95834 * 21 20 19 37 37 H 1.08003 * 120.99018 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.01419 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.06815 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5285 -2.6367 0.0009 12 8 6.1350 -1.5862 0.0005 13 7 6.2024 -3.8039 0.0014 14 6 7.5982 -3.8059 -0.0957 15 6 8.2458 -4.8210 -0.7887 16 6 9.6234 -4.8202 -0.8889 17 6 10.3618 -3.8164 -0.2909 18 6 9.7207 -2.8028 0.4070 19 8 10.4480 -1.8168 0.9948 20 6 10.5953 -1.8513 2.3433 21 6 11.4161 -0.9245 2.9812 22 6 11.5329 -1.0016 4.3604 23 6 10.8250 -1.9962 5.0200 24 7 10.0696 -2.8317 4.3350 25 7 9.9536 -2.7614 3.0587 26 6 8.3377 -2.7971 0.5050 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 3.6579 -3.1506 0.8907 31 1 3.6585 -3.1503 -0.8893 32 1 5.7197 -4.6425 0.0690 33 1 7.6715 -5.6094 -1.2524 34 1 10.1248 -5.6078 -1.4317 35 1 11.4392 -3.8209 -0.3673 36 1 11.9454 -0.1694 2.4189 37 1 12.1556 -0.3077 4.9055 38 1 10.8922 -2.0854 6.0942 39 1 7.8370 -2.0093 1.0481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360289401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:25 Heat of formation + Delta-G solvation = -3.452806 kcal Electronic energy + Delta-G solvation = -24443.984029 eV Core-core repulsion = 20737.997198 eV Total energy + Delta-G solvation = -3705.986831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52534 -41.62232 -40.56005 -38.79874 -35.80388 -35.57967 -34.27165 -33.44448 -32.90840 -31.34092 -30.62052 -28.02851 -26.05884 -25.52175 -24.49370 -23.49674 -22.70413 -21.31033 -20.43583 -19.26869 -18.74447 -18.01029 -17.92239 -17.59323 -17.31915 -17.26700 -16.61406 -16.31504 -15.95584 -15.75183 -15.25711 -15.12837 -14.79386 -14.61842 -14.46910 -14.21404 -14.03275 -13.65585 -13.48014 -12.96306 -12.80857 -12.65092 -12.41730 -12.17522 -12.02900 -11.82510 -11.51288 -11.44417 -11.33244 -10.88088 -10.81464 -10.72112 -10.40632 -9.82834 -9.24549 -8.35019 -6.37749 -0.26327 -0.12918 0.02614 0.23920 1.28898 1.30954 1.45663 1.49342 1.77076 2.00420 2.31000 2.47543 2.77269 3.00489 3.03518 3.38525 3.74067 3.76714 3.87950 3.97054 4.04417 4.10635 4.14852 4.29381 4.38832 4.43087 4.48270 4.60757 4.72509 4.82869 4.92595 5.18248 5.19192 5.22871 5.27901 5.31976 5.37247 5.39596 5.56510 5.74326 6.19100 6.21592 6.38240 6.68433 7.09876 7.27538 7.58841 8.80604 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003313 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.310370 B = 8449.220948 C = 9760.084753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.004 3.996 10 C -0.112 4.112 11 C 0.513 3.487 12 O -0.566 6.566 13 N -0.661 5.661 14 C 0.143 3.857 15 C -0.132 4.132 16 C -0.077 4.077 17 C -0.136 4.136 18 C 0.080 3.920 19 O -0.252 6.252 20 C 0.232 3.768 21 C -0.136 4.136 22 C -0.064 4.064 23 C 0.011 3.989 24 N -0.252 5.252 25 N -0.326 5.326 26 C -0.141 4.141 27 H 0.268 0.732 28 H 0.006 0.994 29 H 0.009 0.991 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.432 0.568 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.151 0.849 36 H 0.184 0.816 37 H 0.211 0.789 38 H 0.214 0.786 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.551 -9.639 5.093 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.034 4.034 10 C -0.152 4.152 11 C 0.303 3.697 12 O -0.444 6.444 13 N -0.308 5.308 14 C 0.049 3.951 15 C -0.152 4.152 16 C -0.096 4.096 17 C -0.155 4.155 18 C 0.038 3.962 19 O -0.156 6.156 20 C 0.048 3.952 21 C -0.165 4.165 22 C -0.092 4.092 23 C -0.156 4.156 24 N -0.094 5.094 25 N -0.180 5.180 26 C -0.162 4.162 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.028 0.972 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.272 0.728 33 H 0.185 0.815 34 H 0.196 0.804 35 H 0.169 0.831 36 H 0.202 0.798 37 H 0.228 0.772 38 H 0.231 0.769 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 28.789 -9.888 4.850 30.824 hybrid contribution 0.197 1.934 0.096 1.947 sum 28.986 -7.954 4.946 30.461 Atomic orbital electron populations 1.70012 1.07651 1.28117 1.52368 1.25760 0.95476 1.02669 0.94302 0.85876 0.79067 0.79857 0.79178 1.19233 1.20142 1.19165 1.21394 0.90978 0.93883 1.50381 0.92741 1.19231 0.94228 0.93598 0.96294 1.21525 0.87562 1.00284 1.05804 1.21589 0.91599 0.82926 0.73594 1.90661 1.71069 1.33266 1.49385 1.43479 1.04509 1.10242 1.72595 1.17821 0.83200 0.96700 0.97401 1.21423 0.95807 0.99288 0.98637 1.21270 0.92699 0.97881 0.97706 1.21411 1.01731 0.92312 1.00052 1.18596 0.88882 0.90457 0.98297 1.84573 1.67855 1.47092 1.16072 1.22132 0.93628 0.94300 0.85146 1.22045 0.98777 0.99350 0.96307 1.22929 0.96459 0.97350 0.92491 1.25009 0.93705 0.92469 1.04427 1.72750 1.15059 1.22529 0.99029 1.73060 1.20904 1.21657 1.02364 1.21238 0.93536 1.00253 1.01195 0.92295 0.97532 0.97247 0.87354 0.86828 0.72829 0.81465 0.80411 0.83143 0.79833 0.77205 0.76907 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.02 0.95 5.47 84.66 0.46 1.42 16 3 Si 0.94 47.57 27.47 68.60 1.88 49.45 16 4 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.27 -13.70 6.54 99.48 0.65 -13.05 16 7 C -0.53 -30.68 9.66 25.60 0.25 -30.44 16 8 H 0.05 3.30 7.99 -2.91 -0.02 3.27 16 9 C 0.00 0.23 3.33 29.85 0.10 0.33 16 10 C -0.11 -4.26 5.64 29.85 0.17 -4.09 16 11 C 0.51 19.14 7.67 87.66 0.67 19.81 16 12 O -0.57 -26.37 13.42 -3.08 -0.04 -26.41 16 13 N -0.66 -18.39 5.34 -303.54 -1.62 -20.01 16 14 C 0.14 4.11 6.30 38.14 0.24 4.35 16 15 C -0.13 -2.58 9.96 22.41 0.22 -2.36 16 16 C -0.08 -1.31 10.03 22.24 0.22 -1.09 16 17 C -0.14 -2.98 9.98 22.39 0.22 -2.76 16 18 C 0.08 2.40 5.23 22.49 0.12 2.52 16 19 O -0.25 -7.50 9.98 -33.50 -0.33 -7.84 16 20 C 0.23 6.28 7.48 84.86 0.63 6.91 16 21 C -0.14 -2.28 10.16 22.61 0.23 -2.05 16 22 C -0.06 -0.68 10.20 22.49 0.23 -0.45 16 23 C 0.01 0.17 11.31 84.82 0.96 1.13 16 24 N -0.25 -6.73 11.49 -57.22 -0.66 -7.39 16 25 N -0.33 -10.07 10.18 -170.20 -1.73 -11.80 16 26 C -0.14 -4.90 8.11 22.49 0.18 -4.72 16 27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.01 0.34 7.16 -2.38 -0.02 0.32 16 29 H 0.01 0.48 7.53 -2.38 -0.02 0.46 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 32 H 0.43 8.21 8.82 -92.71 -0.82 7.39 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.21 -0.02 8.06 -2.91 -0.02 -0.05 16 38 H 0.21 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.10 4.38 6.22 -2.91 -0.02 4.36 16 Total: -1.00 -88.07 343.78 2.93 -85.14 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.22 Total: 9.27 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.91 Total: -11.48 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.71 Total: -98.13 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.38 Total: -34.25 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.88 Total: 49.45 kcal Total: -88.07 2.93 -85.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360289401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.685 kcal (2) G-P(sol) polarization free energy of solvation -88.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds