Wall clock time and date at job start Tue Mar 31 2020 10:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21295 * 119.99745 * 0.02562 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46832 * 125.60626 * 179.71623 * 18 16 15 20 20 C 1.53803 * 104.33327 * 179.97438 * 19 18 16 21 21 N 1.47005 * 104.81471 * 0.32749 * 20 19 18 22 22 N 1.40341 * 142.02525 * 179.78985 * 21 20 19 23 23 C 1.30743 * 108.27696 * 180.02562 * 22 21 20 24 24 C 1.39584 * 108.32796 * 359.97438 * 23 22 21 25 25 C 1.34650 * 109.73499 * 359.78819 * 21 20 19 26 26 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 30 30 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 31 31 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 32 32 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 33 33 H 1.09001 * 110.45907 * 298.75554 * 19 18 16 34 34 H 1.08997 * 110.45550 * 61.32287 * 19 18 16 35 35 H 1.09006 * 110.54787 * 241.40603 * 20 19 18 36 36 H 1.08998 * 110.28441 * 119.12337 * 20 19 18 37 37 H 1.07997 * 125.82840 * 179.97438 * 23 22 21 38 38 H 1.08001 * 126.05321 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 6 1.2648 -7.8050 -0.9053 17 8 1.6198 -7.1952 -1.8920 18 7 0.6604 -9.0026 -1.0345 19 6 0.3651 -9.6786 -2.3040 20 6 -0.3182 -10.9916 -1.8861 21 7 -0.3588 -10.9435 -0.4174 22 7 -0.7826 -11.6759 0.7022 23 6 -0.4822 -10.9935 1.7762 24 6 0.1412 -9.8081 1.3830 25 6 0.2061 -9.8005 0.0158 26 6 1.4365 -4.7345 0.2252 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2810 -4.5475 0.1869 30 1 4.1534 -6.7248 0.4030 31 1 2.1300 -7.9004 1.0432 32 1 0.5456 -7.0925 0.9733 33 1 -0.3088 -9.0733 -2.9102 34 1 1.2863 -9.8860 -2.8484 35 1 0.2643 -11.8497 -2.2217 36 1 -1.3287 -11.0377 -2.2923 37 1 -0.6822 -11.2955 2.7936 38 1 0.5076 -9.0341 2.0411 39 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375563538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:13 Heat of formation + Delta-G solvation = 77.916740 kcal Electronic energy + Delta-G solvation = -24687.910045 eV Core-core repulsion = 20985.451661 eV Total energy + Delta-G solvation = -3702.458383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40555 -39.88400 -38.85310 -37.14120 -36.36215 -33.49458 -32.34026 -31.87166 -29.92878 -29.22259 -28.70980 -27.27341 -25.28781 -23.92546 -22.74372 -21.65919 -21.36413 -20.77799 -19.46101 -17.68385 -17.26825 -17.10093 -16.93784 -16.04879 -15.90534 -15.39258 -14.97754 -14.52485 -14.39955 -14.34245 -14.11081 -13.85942 -13.58841 -13.44088 -13.25289 -12.77636 -12.71902 -12.52400 -12.40937 -11.89051 -11.56732 -11.29083 -11.03883 -10.91046 -10.86246 -10.77169 -10.62568 -10.42026 -10.18217 -9.32977 -9.23336 -8.82834 -8.32168 -8.09561 -7.22148 -6.42869 -4.01889 1.40537 1.55714 2.07156 2.34658 2.38241 2.59138 2.75822 3.13693 3.15009 3.20653 3.55345 3.97997 4.19520 4.29510 4.49640 4.68413 4.70979 4.88156 4.93794 5.05232 5.07453 5.11334 5.15975 5.28132 5.45601 5.50261 5.63396 5.66766 5.73973 5.92469 6.17003 6.33278 6.34684 6.45131 6.63521 6.87514 6.92002 7.07880 7.24456 7.36750 7.44286 7.52999 7.75695 7.81794 8.02145 9.02961 9.73368 10.75396 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.002708 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.662807 B =10337.820670 C =10476.816662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.155 3.845 11 C -0.228 4.228 12 C -0.074 4.074 13 C -0.195 4.195 14 C -0.039 4.039 15 C -0.089 4.089 16 C 0.540 3.460 17 O -0.485 6.485 18 N -0.553 5.553 19 C 0.094 3.906 20 C 0.125 3.875 21 N -0.406 5.406 22 N -0.272 5.272 23 C 0.074 3.926 24 C -0.289 4.289 25 C 0.299 3.701 26 C -0.174 4.174 27 H 0.269 0.731 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.196 0.804 38 H 0.156 0.844 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -20.780 0.334 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.214 4.214 14 C -0.039 4.039 15 C -0.128 4.128 16 C 0.330 3.670 17 O -0.355 6.355 18 N -0.284 5.284 19 C -0.028 4.028 20 C 0.003 3.997 21 N -0.193 5.193 22 N -0.093 5.093 23 C -0.112 4.112 24 C -0.321 4.321 25 C 0.076 3.924 26 C -0.193 4.193 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.213 0.787 38 H 0.174 0.826 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.443 -21.296 -0.904 21.320 hybrid contribution 0.822 1.508 0.160 1.725 sum 1.265 -19.788 -0.744 19.842 Atomic orbital electron populations 1.70054 1.05943 1.27486 1.46372 1.25285 0.95842 0.98800 0.96627 0.85648 0.79141 0.80420 0.78222 1.19110 1.20187 1.20147 1.21369 0.91812 0.80809 1.52708 0.89039 1.83977 1.34267 1.11388 1.78636 1.19260 0.90240 0.87950 0.92411 1.21204 0.93831 0.99049 1.10636 1.20682 0.98440 0.92257 0.97858 1.20356 0.93191 0.97009 1.10887 1.18629 0.93277 0.91458 1.00576 1.20698 1.03299 0.95949 0.92853 1.20892 0.75521 0.77521 0.93076 1.90819 1.47189 1.57186 1.40269 1.45692 1.58477 1.19322 1.04888 1.22650 1.02154 0.91103 0.86935 1.22560 1.03539 0.98867 0.74711 1.49824 1.47870 1.15446 1.06113 1.77556 1.24313 1.17733 0.89674 1.23759 0.96766 0.92429 0.98219 1.20621 1.17809 1.03950 0.89728 1.19263 0.95991 0.86353 0.90751 1.19950 0.99103 0.89978 1.10256 0.92121 0.85529 0.87368 0.87853 0.87517 0.87393 0.87991 0.88071 0.87975 0.87961 0.78749 0.82607 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 10 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.23 -5.06 9.17 -39.39 -0.36 -5.43 16 12 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.20 -3.45 9.70 -39.53 -0.38 -3.83 16 14 C -0.04 -0.70 4.37 -104.65 -0.46 -1.15 16 15 C -0.09 -1.20 3.99 -29.03 -0.12 -1.31 16 16 C 0.54 7.85 7.81 -10.99 -0.09 7.77 16 17 O -0.49 -8.93 16.36 5.54 0.09 -8.84 16 18 N -0.55 -6.45 3.14 -114.65 -0.36 -6.81 16 19 C 0.09 0.78 7.18 -3.44 -0.02 0.75 16 20 C 0.12 0.86 7.99 -3.35 -0.03 0.84 16 21 N -0.41 -4.36 4.89 -59.56 -0.29 -4.65 16 22 N -0.27 -3.10 12.70 30.55 0.39 -2.71 16 23 C 0.07 0.68 12.00 -17.51 -0.21 0.47 16 24 C -0.29 -2.89 9.87 -39.57 -0.39 -3.28 16 25 C 0.30 3.36 7.44 -153.40 -1.14 2.22 16 26 C -0.17 -3.74 9.65 -39.40 -0.38 -4.12 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.15 7.58 -51.93 -0.39 0.76 16 32 H 0.11 1.30 7.57 -51.93 -0.39 0.90 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.16 1.29 6.71 -52.49 -0.35 0.94 16 39 H 0.11 2.40 8.06 -52.48 -0.42 1.97 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -36.01 338.04 -7.61 -43.61 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.23 Total: 3.69 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -4.04 Total: -15.09 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.50 Total: -38.95 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.01 -7.61 -43.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375563538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.529 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds