Wall clock time and date at job start Tue Mar 31 2020 10:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21295 * 119.99745 * 0.02562 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46832 * 125.60626 * 179.71623 * 18 16 15 20 20 C 1.53803 * 104.33327 * 179.97438 * 19 18 16 21 21 N 1.47005 * 104.81471 * 0.32749 * 20 19 18 22 22 N 1.40341 * 142.02525 * 179.78985 * 21 20 19 23 23 C 1.30743 * 108.27696 * 180.02562 * 22 21 20 24 24 C 1.39584 * 108.32796 * 359.97438 * 23 22 21 25 25 C 1.34650 * 109.73499 * 359.78819 * 21 20 19 26 26 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 30 30 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 31 31 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 32 32 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 33 33 H 1.09001 * 110.45907 * 298.75554 * 19 18 16 34 34 H 1.08997 * 110.45550 * 61.32287 * 19 18 16 35 35 H 1.09006 * 110.54787 * 241.40603 * 20 19 18 36 36 H 1.08998 * 110.28441 * 119.12337 * 20 19 18 37 37 H 1.07997 * 125.82840 * 179.97438 * 23 22 21 38 38 H 1.08001 * 126.05321 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 6 1.2648 -7.8050 -0.9053 17 8 1.6198 -7.1952 -1.8920 18 7 0.6604 -9.0026 -1.0345 19 6 0.3651 -9.6786 -2.3040 20 6 -0.3182 -10.9916 -1.8861 21 7 -0.3588 -10.9435 -0.4174 22 7 -0.7826 -11.6759 0.7022 23 6 -0.4822 -10.9935 1.7762 24 6 0.1412 -9.8081 1.3830 25 6 0.2061 -9.8005 0.0158 26 6 1.4365 -4.7345 0.2252 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2810 -4.5475 0.1869 30 1 4.1534 -6.7248 0.4030 31 1 2.1300 -7.9004 1.0432 32 1 0.5456 -7.0925 0.9733 33 1 -0.3088 -9.0733 -2.9102 34 1 1.2863 -9.8860 -2.8484 35 1 0.2643 -11.8497 -2.2217 36 1 -1.3287 -11.0377 -2.2923 37 1 -0.6822 -11.2955 2.7936 38 1 0.5076 -9.0341 2.0411 39 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375563538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:12 Heat of formation + Delta-G solvation = 54.305739 kcal Electronic energy + Delta-G solvation = -24688.933894 eV Core-core repulsion = 20985.451661 eV Total energy + Delta-G solvation = -3703.482233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.18541 -41.12454 -40.42378 -38.40060 -37.70477 -34.50657 -34.25394 -33.20719 -30.94180 -30.63670 -29.52626 -28.57808 -27.27281 -24.83131 -23.59248 -23.25006 -22.49780 -21.97117 -20.45076 -19.49424 -18.79257 -18.05561 -18.01775 -17.00823 -16.78112 -16.69011 -16.53342 -16.09095 -15.86496 -15.56790 -15.29767 -15.03129 -14.80571 -14.55040 -14.32765 -14.12346 -13.90456 -13.63500 -13.37379 -13.35342 -12.99130 -12.91764 -12.51737 -12.39895 -12.24590 -12.08376 -11.80548 -11.72805 -11.34489 -11.20184 -10.80781 -9.93743 -9.67836 -9.15952 -8.99277 -8.46789 -6.15250 0.43952 0.53211 0.73828 0.88978 1.34941 1.43447 1.45531 1.53552 1.79054 1.94386 2.17865 2.75804 2.91659 3.13664 3.39926 3.44655 3.76320 3.78030 3.88016 4.06922 4.07984 4.27443 4.35534 4.36560 4.40269 4.49568 4.53254 4.55597 4.57117 4.73103 4.76744 4.98707 5.03847 5.13180 5.28397 5.59621 5.63249 5.71101 5.73593 5.76616 5.97408 6.03029 6.22373 6.69300 6.78855 6.97977 7.79188 8.76922 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.002708 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.662807 B =10337.820670 C =10476.816662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.178 4.178 14 C -0.029 4.029 15 C -0.086 4.086 16 C 0.543 3.457 17 O -0.536 6.536 18 N -0.550 5.550 19 C 0.088 3.912 20 C 0.124 3.876 21 N -0.414 5.414 22 N -0.298 5.298 23 C 0.076 3.924 24 C -0.290 4.290 25 C 0.276 3.724 26 C -0.191 4.191 27 H 0.272 0.728 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -23.332 1.148 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.262 4.262 12 C -0.089 4.089 13 C -0.196 4.196 14 C -0.030 4.030 15 C -0.125 4.125 16 C 0.334 3.666 17 O -0.410 6.410 18 N -0.280 5.280 19 C -0.034 4.034 20 C 0.004 3.996 21 N -0.200 5.200 22 N -0.120 5.120 23 C -0.109 4.109 24 C -0.322 4.322 25 C 0.054 3.946 26 C -0.210 4.210 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.245 0.755 38 H 0.190 0.810 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.375 -23.950 -0.079 24.067 hybrid contribution 0.268 1.885 -0.050 1.904 sum 2.643 -22.065 -0.129 22.223 Atomic orbital electron populations 1.70199 1.08040 1.28684 1.49107 1.26606 0.96874 1.02740 0.95908 0.84516 0.78242 0.74777 0.78572 1.17442 1.19460 1.19155 1.21865 0.92515 0.81431 1.53069 0.88131 1.83938 1.35956 1.12582 1.81650 1.19840 0.91656 0.87846 0.94313 1.21328 0.93084 1.00336 1.11443 1.21134 1.00318 0.91335 0.96143 1.20968 0.93293 0.98188 1.07141 1.19064 0.93809 0.92244 0.97855 1.20777 1.04462 0.93999 0.93240 1.20846 0.75209 0.77968 0.92599 1.90809 1.49815 1.58728 1.41611 1.45511 1.57432 1.18629 1.06390 1.22907 1.03053 0.91504 0.85899 1.22807 1.04859 0.98792 0.73161 1.50123 1.47568 1.15151 1.07185 1.77516 1.25207 1.18786 0.90483 1.24362 0.95530 0.91758 0.99220 1.21011 1.17166 1.04492 0.89541 1.19485 0.97159 0.86804 0.91181 1.20195 0.99273 0.90467 1.11063 0.91874 0.86335 0.83502 0.83446 0.83736 0.85924 0.87782 0.86844 0.85678 0.86309 0.75491 0.80971 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.59 13.67 21.61 0.30 -57.30 16 2 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 3 Si 1.02 43.62 29.55 68.60 2.03 45.64 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.41 -24.62 9.49 67.92 0.64 -23.98 16 8 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 9 O -0.23 -14.56 9.76 -22.74 -0.22 -14.78 16 10 C 0.11 5.87 6.65 22.58 0.15 6.02 16 11 C -0.24 -10.93 9.17 22.39 0.21 -10.73 16 12 C -0.07 -2.51 10.04 22.25 0.22 -2.29 16 13 C -0.18 -5.63 9.70 22.30 0.22 -5.42 16 14 C -0.03 -0.99 4.37 -19.88 -0.09 -1.08 16 15 C -0.09 -2.08 3.99 29.10 0.12 -1.96 16 16 C 0.54 14.84 7.81 87.66 0.68 15.53 16 17 O -0.54 -19.40 16.36 -3.08 -0.05 -19.45 16 18 N -0.55 -11.74 3.14 -635.04 -1.99 -13.74 16 19 C 0.09 1.30 7.18 86.59 0.62 1.92 16 20 C 0.12 1.43 7.99 86.55 0.69 2.12 16 21 N -0.41 -7.91 4.89 -342.35 -1.67 -9.59 16 22 N -0.30 -6.10 12.70 -57.26 -0.73 -6.83 16 23 C 0.08 1.18 12.00 85.18 1.02 2.20 16 24 C -0.29 -4.90 9.87 22.28 0.22 -4.68 16 25 C 0.28 5.52 7.44 131.68 0.98 6.50 16 26 C -0.19 -8.45 9.65 22.39 0.22 -8.24 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 29 H 0.15 4.01 8.06 -2.92 -0.02 3.99 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.14 2.42 7.58 -2.39 -0.02 2.40 16 32 H 0.12 2.65 7.57 -2.39 -0.02 2.63 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.17 2.19 6.71 -2.91 -0.02 2.17 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -84.71 338.04 5.12 -79.59 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.09 Total: 21.46 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 6.37 Total: -25.02 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -4.10 Total: -87.45 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.27 Total: -34.23 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -84.71 5.12 -79.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375563538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.896 kcal (2) G-P(sol) polarization free energy of solvation -84.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds