Wall clock time and date at job start Tue Mar 31 2020 10:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38276 * 119.94102 * 2 1 4 4 C 1.38151 * 120.07994 * 179.74772 * 3 2 1 5 5 C 1.38705 * 119.95763 * 0.54984 * 4 3 2 6 6 O 1.35920 * 120.06674 * 179.72538 * 5 4 3 7 7 C 1.42903 * 116.99454 * 359.72867 * 6 5 4 8 8 C 1.53000 * 109.47039 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47253 * 305.00429 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99836 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99933 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00136 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.46938 * 120.00335 * 19 17 15 22 22 H 1.48497 * 109.47028 * 240.00529 * 19 17 15 23 23 C 1.38820 * 119.87668 * 359.45480 * 5 4 3 24 24 Cl 1.73603 * 120.04032 * 180.29578 * 23 5 4 25 25 C 1.38252 * 119.94233 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47241 * 269.97076 * 1 2 3 27 27 H 1.08998 * 109.47108 * 29.98113 * 1 2 3 28 28 H 1.09007 * 109.46977 * 149.97251 * 1 2 3 29 29 H 1.08005 * 119.95972 * 0.04374 * 3 2 1 30 30 H 1.07998 * 120.02276 * 180.30350 * 4 3 2 31 31 H 1.08996 * 109.47308 * 59.99940 * 7 6 5 32 32 H 1.09001 * 109.46918 * 299.99809 * 7 6 5 33 33 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 34 34 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 35 35 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 36 36 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 37 37 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 38 38 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 39 39 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 40 40 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 41 41 H 0.97003 * 119.99947 * 179.97438 * 18 17 15 42 42 H 1.07997 * 119.97533 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5787 1.2016 0.0053 5 6 4.2742 0.0016 -0.0010 6 8 5.6334 0.0023 -0.0015 7 6 6.2814 1.2760 -0.0014 8 6 7.7983 1.0765 -0.0026 9 1 8.0823 0.4442 0.8387 10 8 8.1954 0.4504 -1.2242 11 6 8.4914 2.4346 0.1232 12 7 9.9420 2.2350 0.2413 13 6 10.6682 3.4857 -0.0162 14 6 10.2922 1.6844 1.5575 15 6 11.7397 1.2650 1.5576 16 1 12.3395 1.3949 0.6691 17 6 12.2983 0.7165 2.6926 18 7 11.5679 0.5589 3.7748 19 14 14.0928 0.1973 2.6930 20 1 14.6898 0.4787 1.3627 21 1 14.8277 0.9573 3.7357 22 1 14.1873 -1.2565 2.9809 23 6 3.5796 -1.2004 -0.0011 24 17 4.4459 -2.7048 -0.0011 25 6 2.1971 -1.1980 -0.0005 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.6555 2.1326 0.0007 30 1 4.1167 2.1380 0.0102 31 1 5.9885 1.8326 0.8888 32 1 5.9878 1.8330 -0.8911 33 1 7.9738 0.9583 -2.0167 34 1 8.1223 2.9503 1.0097 35 1 8.2781 3.0347 -0.7614 36 1 11.7361 3.2782 -0.0853 37 1 10.4862 4.1860 0.7989 38 1 10.3213 3.9209 -0.9534 39 1 10.1339 2.4441 2.3230 40 1 9.6633 0.8196 1.7685 41 1 11.9609 0.1727 4.5731 42 1 1.6557 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414150049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:47 Heat of formation + Delta-G solvation = -69.029247 kcal Electronic energy + Delta-G solvation = -23338.908404 eV Core-core repulsion = 19731.185459 eV Total energy + Delta-G solvation = -3607.722945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.42896 -38.46321 -37.26079 -36.45195 -35.40593 -32.49953 -32.24564 -31.16362 -30.31942 -27.46919 -27.03400 -25.98995 -23.90805 -23.07629 -21.83080 -21.32675 -20.15994 -18.35632 -16.88524 -16.61807 -16.23242 -16.00189 -15.56513 -14.88379 -14.79394 -14.66079 -14.44430 -14.14695 -13.94868 -13.69191 -13.32980 -13.20861 -12.78702 -12.55730 -12.45748 -11.99413 -11.96646 -11.54265 -11.46601 -11.42438 -11.21166 -10.97966 -10.90400 -10.85647 -10.69046 -10.62805 -10.37648 -9.78588 -9.72059 -9.15531 -9.10706 -8.41476 -8.21569 -7.26771 -6.01019 -4.01554 0.90904 1.07445 2.12692 2.96484 3.33387 3.34610 3.40799 3.45875 4.40588 4.46332 4.50461 4.61337 4.71676 4.74168 4.93251 4.98397 5.03321 5.18725 5.26078 5.29941 5.35028 5.40662 5.44663 5.54106 5.57715 5.60978 5.82378 5.91135 5.94322 6.02527 6.21563 6.29592 6.35965 6.42817 6.68091 7.16951 7.25738 7.27809 7.79585 8.03311 8.07435 8.17549 8.53216 9.05606 9.62455 11.10197 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002796 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.807977 B =10010.899099 C =10747.576583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.198 4.198 5 C 0.141 3.859 6 O -0.286 6.286 7 C 0.027 3.973 8 C 0.117 3.883 9 H 0.117 0.883 10 O -0.531 6.531 11 C 0.030 3.970 12 N -0.531 5.531 13 C 0.041 3.959 14 C 0.190 3.810 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.068 4.068 24 Cl -0.052 7.052 25 C -0.074 4.074 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.362 0.638 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.013 0.987 38 H 0.043 0.957 39 H -0.010 1.010 40 H 0.032 0.968 41 H 0.260 0.740 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.569 2.475 -8.862 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.217 4.217 5 C 0.093 3.907 6 O -0.199 6.199 7 C -0.049 4.049 8 C 0.057 3.943 9 H 0.134 0.866 10 O -0.334 6.334 11 C -0.099 4.099 12 N -0.255 5.255 13 C -0.107 4.107 14 C 0.065 3.935 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.095 4.095 24 Cl -0.023 7.023 25 C -0.093 4.093 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.207 0.793 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.008 0.992 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.949 1.313 -8.618 23.616 hybrid contribution 0.506 0.915 0.531 1.173 sum -21.442 2.228 -8.088 23.025 Atomic orbital electron populations 1.20707 0.90492 1.02814 1.02380 1.19729 0.96411 0.92295 1.03770 1.20906 0.93221 0.97884 0.97374 1.21248 0.95321 0.96801 1.08349 1.18803 0.83810 0.92521 0.95537 1.86298 1.14572 1.31688 1.87298 1.23785 0.95396 0.83949 1.01747 1.21977 0.86908 0.95678 0.89781 0.86571 1.86758 1.83562 1.48714 1.14375 1.22568 0.92151 0.95057 1.00152 1.62019 1.01992 1.26017 1.35497 1.22191 1.00516 0.90260 0.97737 1.19835 0.97266 0.94244 0.82152 1.21164 0.95123 1.40126 0.97841 0.91787 1.24991 0.98264 0.95953 0.95493 1.69961 1.36105 1.45310 1.02534 0.86437 0.84756 0.78273 0.77943 1.19646 1.21187 1.20962 1.20223 0.91964 0.86147 1.11207 1.98389 1.76757 1.30195 1.96987 1.20777 0.90809 0.98856 0.98843 0.91198 0.91494 0.91508 0.85317 0.84587 0.91066 0.91770 0.79307 0.94785 0.91718 0.90758 0.96878 0.93846 0.99209 0.94955 0.92991 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.12 -1.07 5.88 -104.60 -0.62 -1.69 16 3 C -0.08 -0.67 9.69 -39.60 -0.38 -1.06 16 4 C -0.20 -2.09 9.04 -39.44 -0.36 -2.45 16 5 C 0.14 1.86 6.68 -39.19 -0.26 1.60 16 6 O -0.29 -4.33 9.56 -24.34 -0.23 -4.56 16 7 C 0.03 0.35 4.37 37.16 0.16 0.51 16 8 C 0.12 1.93 3.30 -26.73 -0.09 1.84 16 9 H 0.12 2.35 6.46 -51.93 -0.34 2.02 16 10 O -0.53 -9.20 13.25 -40.08 -0.53 -9.74 16 11 C 0.03 0.50 4.61 -3.83 -0.02 0.48 16 12 N -0.53 -11.31 4.66 -244.37 -1.14 -12.45 16 13 C 0.04 0.79 9.32 60.07 0.56 1.35 16 14 C 0.19 4.95 4.57 -4.97 -0.02 4.93 16 15 C -0.50 -14.37 8.58 -34.44 -0.30 -14.67 16 16 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.07 -0.87 6.33 -39.36 -0.25 -1.12 16 24 Cl -0.05 -0.72 28.50 -51.86 -1.48 -2.20 16 25 C -0.07 -0.75 9.48 -39.57 -0.38 -1.13 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.07 0.34 8.08 -51.92 -0.42 -0.08 16 29 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 30 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.07 0.83 7.65 -51.93 -0.40 0.43 16 32 H 0.06 0.65 7.67 -51.93 -0.40 0.26 16 33 H 0.36 4.57 9.05 45.56 0.41 4.98 16 34 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.06 0.87 7.82 -51.93 -0.41 0.47 16 36 H 0.07 1.51 7.02 -51.93 -0.36 1.15 16 37 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 38 H 0.04 0.67 7.88 -51.93 -0.41 0.27 16 39 H -0.01 -0.27 8.07 -51.93 -0.42 -0.69 16 40 H 0.03 0.90 6.34 -51.93 -0.33 0.57 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -33.20 363.66 -9.29 -42.50 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.43 Total: 0.46 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.68 Total: -10.22 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.40 Total: -38.76 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.76 Total: -14.30 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.20 -9.29 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414150049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.532 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds