Wall clock time and date at job start Tue Mar 31 2020 10:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38276 * 119.94102 * 2 1 4 4 C 1.38151 * 120.07994 * 179.74772 * 3 2 1 5 5 C 1.38705 * 119.95763 * 0.54984 * 4 3 2 6 6 O 1.35920 * 120.06674 * 179.72538 * 5 4 3 7 7 C 1.42903 * 116.99454 * 359.72867 * 6 5 4 8 8 C 1.53000 * 109.47039 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47253 * 305.00429 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99836 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99933 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00136 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.46938 * 120.00335 * 19 17 15 22 22 H 1.48497 * 109.47028 * 240.00529 * 19 17 15 23 23 C 1.38820 * 119.87668 * 359.45480 * 5 4 3 24 24 Cl 1.73603 * 120.04032 * 180.29578 * 23 5 4 25 25 C 1.38252 * 119.94233 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47241 * 269.97076 * 1 2 3 27 27 H 1.08998 * 109.47108 * 29.98113 * 1 2 3 28 28 H 1.09007 * 109.46977 * 149.97251 * 1 2 3 29 29 H 1.08005 * 119.95972 * 0.04374 * 3 2 1 30 30 H 1.07998 * 120.02276 * 180.30350 * 4 3 2 31 31 H 1.08996 * 109.47308 * 59.99940 * 7 6 5 32 32 H 1.09001 * 109.46918 * 299.99809 * 7 6 5 33 33 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 34 34 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 35 35 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 36 36 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 37 37 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 38 38 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 39 39 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 40 40 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 41 41 H 0.97003 * 119.99947 * 179.97438 * 18 17 15 42 42 H 1.07997 * 119.97533 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5787 1.2016 0.0053 5 6 4.2742 0.0016 -0.0010 6 8 5.6334 0.0023 -0.0015 7 6 6.2814 1.2760 -0.0014 8 6 7.7983 1.0765 -0.0026 9 1 8.0823 0.4442 0.8387 10 8 8.1954 0.4504 -1.2242 11 6 8.4914 2.4346 0.1232 12 7 9.9420 2.2350 0.2413 13 6 10.6682 3.4857 -0.0162 14 6 10.2922 1.6844 1.5575 15 6 11.7397 1.2650 1.5576 16 1 12.3395 1.3949 0.6691 17 6 12.2983 0.7165 2.6926 18 7 11.5679 0.5589 3.7748 19 14 14.0928 0.1973 2.6930 20 1 14.6898 0.4787 1.3627 21 1 14.8277 0.9573 3.7357 22 1 14.1873 -1.2565 2.9809 23 6 3.5796 -1.2004 -0.0011 24 17 4.4459 -2.7048 -0.0011 25 6 2.1971 -1.1980 -0.0005 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.6555 2.1326 0.0007 30 1 4.1167 2.1380 0.0102 31 1 5.9885 1.8326 0.8888 32 1 5.9878 1.8330 -0.8911 33 1 7.9738 0.9583 -2.0167 34 1 8.1223 2.9503 1.0097 35 1 8.2781 3.0347 -0.7614 36 1 11.7361 3.2782 -0.0853 37 1 10.4862 4.1860 0.7989 38 1 10.3213 3.9209 -0.9534 39 1 10.1339 2.4441 2.3230 40 1 9.6633 0.8196 1.7685 41 1 11.9609 0.1727 4.5731 42 1 1.6557 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414150049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:45 Heat of formation + Delta-G solvation = -92.663752 kcal Electronic energy + Delta-G solvation = -23339.933273 eV Core-core repulsion = 19731.185459 eV Total energy + Delta-G solvation = -3608.747814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.32238 -39.59715 -38.47653 -37.41067 -36.92945 -34.62976 -33.00835 -32.00814 -31.50269 -29.42481 -28.12618 -26.93977 -25.58979 -24.21758 -22.98037 -22.21990 -21.77599 -19.30315 -18.62939 -17.92943 -17.52846 -16.92574 -16.70218 -16.55184 -16.07928 -15.93161 -15.58562 -15.22349 -15.03434 -14.88837 -14.55629 -14.31721 -13.97170 -13.90385 -13.55667 -13.13591 -13.12098 -12.95213 -12.68187 -12.60862 -12.57900 -12.42658 -12.36911 -12.28728 -12.06026 -11.80141 -11.72883 -11.52732 -11.32155 -10.92964 -10.62395 -9.91103 -9.05899 -8.98145 -8.22083 -6.31230 0.12281 0.28082 1.20266 1.38104 1.40029 1.53099 2.00207 2.39247 2.57492 3.10528 3.24653 3.52745 3.72564 3.78732 3.87190 3.99426 4.01789 4.19750 4.25402 4.29531 4.33367 4.37215 4.55284 4.62054 4.64264 4.76620 4.89160 4.90431 4.98370 5.02000 5.08700 5.17705 5.19625 5.24222 5.29865 5.52830 5.63740 5.72913 6.04773 6.28565 6.31952 6.62208 6.84760 6.99579 7.38173 8.89335 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002796 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.807977 B =10010.899099 C =10747.576583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.117 4.117 3 C -0.073 4.073 4 C -0.198 4.198 5 C 0.111 3.889 6 O -0.319 6.319 7 C 0.037 3.963 8 C 0.122 3.878 9 H 0.064 0.936 10 O -0.557 6.557 11 C 0.032 3.968 12 N -0.546 5.546 13 C 0.043 3.957 14 C 0.206 3.794 15 C -0.521 4.521 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.281 1.281 23 C -0.091 4.091 24 Cl -0.077 7.077 25 C -0.080 4.080 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.383 0.617 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.011 0.989 38 H 0.086 0.914 39 H -0.036 1.036 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 4.293 -10.283 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.217 4.217 5 C 0.065 3.935 6 O -0.232 6.232 7 C -0.038 4.038 8 C 0.062 3.938 9 H 0.082 0.918 10 O -0.363 6.363 11 C -0.096 4.096 12 N -0.270 5.270 13 C -0.105 4.105 14 C 0.080 3.920 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.207 1.207 23 C -0.118 4.118 24 Cl -0.048 7.048 25 C -0.098 4.098 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.179 0.821 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.029 0.971 38 H 0.105 0.895 39 H -0.019 1.019 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.585 3.154 -10.067 25.837 hybrid contribution 0.863 0.383 0.926 1.322 sum -22.722 3.538 -9.141 24.746 Atomic orbital electron populations 1.20789 0.88074 1.04111 1.03320 1.20159 0.98111 0.91686 1.01750 1.21335 0.92709 0.99279 0.95764 1.21516 0.96197 0.96398 1.07600 1.19080 0.83104 0.93715 0.97627 1.86230 1.16056 1.32779 1.88170 1.23641 0.92458 0.83811 1.03935 1.21711 0.89700 0.94406 0.88026 0.91835 1.86698 1.84150 1.49966 1.15491 1.22668 0.89013 0.95677 1.02254 1.61877 1.05321 1.27679 1.32117 1.22212 0.99317 0.89198 0.99762 1.19432 0.95777 0.92615 0.84163 1.21506 0.96398 1.40231 0.97847 0.92063 1.25928 1.03045 0.95869 0.95068 1.70087 1.38184 1.46088 1.03227 0.85346 0.79090 0.77819 0.78457 1.18708 1.20080 1.20660 1.20537 0.92926 0.85293 1.13053 1.98370 1.77496 1.31698 1.97220 1.21042 0.89858 1.00369 0.98575 0.90288 0.89818 0.90702 0.82084 0.82770 0.89963 0.88197 0.76894 0.94401 0.87233 0.92801 0.97059 0.89496 1.01870 0.97957 0.92745 0.83114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.24 0.71 -0.17 16 2 C -0.12 -1.75 5.88 -19.85 -0.12 -1.87 16 3 C -0.07 -1.06 9.69 22.26 0.22 -0.85 16 4 C -0.20 -3.75 9.04 22.36 0.20 -3.55 16 5 C 0.11 2.90 6.68 22.52 0.15 3.05 16 6 O -0.32 -9.82 9.56 -88.01 -0.84 -10.66 16 7 C 0.04 0.92 4.37 71.98 0.31 1.23 16 8 C 0.12 4.08 3.30 30.59 0.10 4.18 16 9 H 0.06 2.80 6.46 -2.39 -0.02 2.78 16 10 O -0.56 -19.35 13.25 -144.34 -1.91 -21.27 16 11 C 0.03 1.04 4.61 86.30 0.40 1.44 16 12 N -0.55 -23.32 4.66 -927.06 -4.32 -27.63 16 13 C 0.04 1.58 9.32 127.69 1.19 2.77 16 14 C 0.21 11.24 4.57 85.56 0.39 11.63 16 15 C -0.52 -30.60 8.58 25.60 0.22 -30.38 16 16 H 0.06 3.54 7.10 -2.92 -0.02 3.52 16 17 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 18 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 19 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 C -0.09 -2.34 6.33 22.41 0.14 -2.20 16 24 Cl -0.08 -2.21 28.50 -2.72 -0.08 -2.29 16 25 C -0.08 -1.54 9.48 22.28 0.21 -1.33 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.45 8.08 -2.39 -0.02 0.44 16 28 H 0.07 0.53 8.08 -2.38 -0.02 0.51 16 29 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 30 H 0.15 2.23 6.30 -2.91 -0.02 2.21 16 31 H 0.08 1.82 7.65 -2.39 -0.02 1.80 16 32 H 0.10 1.74 7.67 -2.39 -0.02 1.72 16 33 H 0.38 9.10 9.05 -74.06 -0.67 8.43 16 34 H 0.04 1.20 8.05 -2.39 -0.02 1.18 16 35 H 0.11 2.54 7.82 -2.39 -0.02 2.52 16 36 H 0.05 2.17 7.02 -2.39 -0.02 2.15 16 37 H 0.01 0.40 8.07 -2.39 -0.02 0.38 16 38 H 0.09 2.42 7.88 -2.39 -0.02 2.40 16 39 H -0.04 -2.12 8.07 -2.39 -0.02 -2.13 16 40 H 0.00 0.14 6.34 -2.39 -0.02 0.13 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -76.17 363.66 0.12 -76.05 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.36 Total: 11.25 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.60 Total: -15.66 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -4.03 Total: -85.32 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -2.75 Total: -31.92 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -76.17 0.12 -76.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414150049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.614 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds