Wall clock time and date at job start Tue Mar 31 2020 10:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38168 * 120.02226 * 2 1 4 4 C 1.38338 * 120.04672 * 179.97438 * 3 2 1 5 5 Cl 1.73594 * 119.95980 * 179.97438 * 4 3 2 6 6 C 1.38396 * 120.08152 * 359.97438 * 4 3 2 7 7 C 1.38116 * 120.04328 * 359.74465 * 6 4 3 8 8 C 1.38706 * 120.02360 * 179.97438 * 2 1 3 9 9 O 1.35920 * 120.03743 * 359.97438 * 8 2 1 10 10 C 1.42903 * 116.99454 * 180.02562 * 9 8 2 11 11 C 1.53000 * 109.47039 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47253 * 305.00429 * 11 10 9 13 13 O 1.42900 * 109.47194 * 64.99836 * 11 10 9 14 14 C 1.52998 * 109.47107 * 184.99933 * 11 10 9 15 15 N 1.46899 * 109.46858 * 175.04575 * 14 11 10 16 16 C 1.46903 * 110.99991 * 163.94840 * 15 14 11 17 17 C 1.46902 * 111.00138 * 287.89426 * 15 14 11 18 18 C 1.50702 * 109.47206 * 170.00004 * 17 15 14 19 19 H 1.07990 * 119.99891 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99588 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99568 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00409 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47442 * 89.99373 * 22 20 18 24 24 H 1.48498 * 109.47152 * 209.99930 * 22 20 18 25 25 H 1.48506 * 109.46689 * 329.99562 * 22 20 18 26 26 H 1.08998 * 109.47320 * 270.02496 * 1 2 3 27 27 H 1.08997 * 109.47292 * 30.02833 * 1 2 3 28 28 H 1.09002 * 109.47024 * 150.02053 * 1 2 3 29 29 H 1.08003 * 119.97305 * 359.95172 * 3 2 1 30 30 H 1.08000 * 119.97281 * 180.02562 * 6 4 3 31 31 H 1.07997 * 120.02159 * 180.27479 * 7 6 4 32 32 H 1.08996 * 109.47308 * 59.99940 * 10 9 8 33 33 H 1.09001 * 109.46918 * 299.99809 * 10 9 8 34 34 H 0.96698 * 114.00266 * 60.00042 * 13 11 10 35 35 H 1.08997 * 109.47560 * 55.04389 * 14 11 10 36 36 H 1.08998 * 109.46907 * 295.04026 * 14 11 10 37 37 H 1.08998 * 109.47439 * 189.27288 * 16 15 14 38 38 H 1.08994 * 109.47470 * 69.26701 * 16 15 14 39 39 H 1.09004 * 109.46549 * 309.26905 * 16 15 14 40 40 H 1.08997 * 109.47475 * 290.00611 * 17 15 14 41 41 H 1.09000 * 109.46537 * 50.00068 * 17 15 14 42 42 H 0.97003 * 119.99757 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5816 1.1969 0.0005 5 17 4.4479 2.7012 -0.0001 6 6 4.2758 -0.0004 0.0016 7 6 3.5884 -1.1983 0.0075 8 6 2.2010 -1.2009 0.0005 9 8 1.5226 -2.3788 0.0016 10 6 2.3023 -3.5764 0.0027 11 6 1.3717 -4.7908 0.0031 12 1 0.6825 -4.7201 0.8446 13 8 0.6305 -4.8233 -1.2182 14 6 2.2021 -6.0696 0.1299 15 7 1.3045 -7.2263 0.2497 16 6 2.0251 -8.4805 -0.0068 17 6 0.6532 -7.2532 1.5661 18 6 -0.4333 -8.2976 1.5678 19 1 -0.6208 -8.8831 0.6799 20 6 -1.1870 -8.5064 2.7032 21 7 -2.1355 -9.4175 2.7045 22 14 -0.8621 -7.4942 4.2393 23 1 -1.6986 -6.2675 4.2099 24 1 -1.2019 -8.2964 5.4418 25 1 0.5726 -7.1139 4.2871 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6582 2.1316 -0.0008 30 1 5.3558 0.0021 0.0024 31 1 4.1305 -2.1323 0.0128 32 1 2.9312 -3.5997 0.8926 33 1 2.9312 -3.6013 -0.8873 34 1 1.1808 -4.8859 -2.0108 35 1 2.8335 -6.0064 1.0161 36 1 2.8281 -6.1855 -0.7548 37 1 1.3119 -9.3019 -0.0748 38 1 2.7230 -8.6718 0.8082 39 1 2.5750 -8.3983 -0.9443 40 1 1.3906 -7.4948 2.3315 41 1 0.2182 -6.2761 1.7762 42 1 -2.6661 -9.5641 3.5032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414167299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:31 Heat of formation + Delta-G solvation = -89.668604 kcal Electronic energy + Delta-G solvation = -23426.850336 eV Core-core repulsion = 19818.232401 eV Total energy + Delta-G solvation = -3608.617935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39733 -39.59753 -38.49193 -37.30328 -36.82725 -34.60465 -33.85634 -31.93210 -30.77298 -29.98879 -28.04381 -27.57925 -25.42870 -23.88699 -22.81491 -22.42000 -21.64429 -19.22964 -18.93708 -17.91914 -17.56206 -17.13383 -16.78434 -16.58776 -16.18457 -15.81623 -15.73695 -15.36535 -14.82909 -14.56322 -14.48628 -14.34045 -14.20743 -13.99206 -13.71184 -13.53704 -13.25856 -13.06771 -12.72809 -12.63236 -12.53791 -12.44055 -12.39490 -12.18470 -11.88693 -11.80682 -11.64567 -11.60221 -11.42131 -10.92372 -10.78181 -9.95715 -9.08180 -8.98288 -8.28795 -6.31656 0.17568 0.17959 1.17172 1.32533 1.34270 1.43629 2.02347 2.32796 2.54015 3.04063 3.20215 3.54881 3.66502 3.73486 3.85307 3.95970 4.04977 4.13883 4.22818 4.30949 4.34466 4.45714 4.51869 4.55497 4.62441 4.69729 4.77938 4.81413 4.88168 4.97282 5.03262 5.06740 5.17683 5.20794 5.21068 5.35280 5.54574 5.59678 5.96239 6.32761 6.36173 6.64266 6.74875 6.99709 7.31442 8.88071 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002659 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.204265 B =10526.046736 C =11043.920132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.076 4.076 4 C -0.081 4.081 5 Cl -0.071 7.071 6 C -0.076 4.076 7 C -0.196 4.196 8 C 0.119 3.881 9 O -0.317 6.317 10 C 0.033 3.967 11 C 0.118 3.882 12 H 0.075 0.925 13 O -0.559 6.559 14 C 0.028 3.972 15 N -0.544 5.544 16 C 0.044 3.956 17 C 0.171 3.829 18 C -0.515 4.515 19 H 0.036 0.964 20 C 0.006 3.994 21 N -0.949 5.949 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.248 1.248 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.383 0.617 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.020 0.980 39 H 0.086 0.914 40 H -0.010 1.010 41 H 0.024 0.976 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.016 22.943 -6.468 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.107 4.107 5 Cl -0.043 7.043 6 C -0.095 4.095 7 C -0.214 4.214 8 C 0.073 3.927 9 O -0.230 6.230 10 C -0.042 4.042 11 C 0.057 3.943 12 H 0.093 0.907 13 O -0.365 6.365 14 C -0.100 4.100 15 N -0.268 5.268 16 C -0.104 4.104 17 C 0.044 3.956 18 C -0.553 4.553 19 H 0.055 0.945 20 C -0.191 4.191 21 N -0.589 5.589 22 Si 0.767 3.233 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.171 1.171 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.231 0.769 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.008 0.992 41 H 0.042 0.958 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.890 23.025 -6.317 28.680 hybrid contribution 0.841 -0.237 1.074 1.385 sum 16.731 22.787 -5.243 28.752 Atomic orbital electron populations 1.20634 0.89444 1.03347 1.02794 1.19438 0.97461 0.89998 1.05196 1.20930 0.92026 0.98154 0.98328 1.20893 0.92553 0.87568 1.09712 1.98360 1.76646 1.32039 1.97214 1.21062 1.01343 0.89711 0.97386 1.21437 0.92311 1.00167 1.07521 1.19222 0.91231 0.85988 0.96270 1.86163 1.36292 1.12511 1.88054 1.23667 0.94251 0.82193 1.04112 1.21803 0.93245 0.90840 0.88366 0.90746 1.86696 1.37705 1.96462 1.15621 1.22738 0.94020 0.90359 1.02872 1.61665 1.30800 1.02808 1.31552 1.22188 0.96384 0.91706 1.00151 1.19987 0.93210 0.95863 0.86562 1.21275 1.16516 1.19118 0.98394 0.94524 1.25865 0.94542 0.96411 1.02324 1.70055 1.22973 1.35500 1.30418 0.85765 0.80046 0.78940 0.78527 1.19315 1.20557 1.17143 0.91047 0.89648 0.92150 0.82917 0.82817 0.82541 0.89527 0.88576 0.76852 0.93288 0.87431 0.93836 0.96169 0.89530 0.99246 0.95769 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.79 71.23 0.70 -1.33 16 2 C -0.12 -2.45 5.89 -19.77 -0.12 -2.57 16 3 C -0.08 -1.32 9.48 22.28 0.21 -1.11 16 4 C -0.08 -1.37 6.32 22.33 0.14 -1.23 16 5 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 6 C -0.08 -1.19 9.82 22.28 0.22 -0.97 16 7 C -0.20 -3.27 9.04 22.36 0.20 -3.07 16 8 C 0.12 2.55 6.66 22.50 0.15 2.70 16 9 O -0.32 -7.83 9.15 -88.01 -0.80 -8.64 16 10 C 0.03 0.65 4.37 71.98 0.31 0.97 16 11 C 0.12 3.27 3.30 30.59 0.10 3.37 16 12 H 0.07 2.63 6.46 -2.39 -0.02 2.61 16 13 O -0.56 -17.04 13.25 -144.34 -1.91 -18.95 16 14 C 0.03 0.77 4.61 86.30 0.40 1.17 16 15 N -0.54 -21.31 4.66 -927.06 -4.32 -25.63 16 16 C 0.04 1.54 9.32 127.69 1.19 2.73 16 17 C 0.17 8.11 3.64 85.56 0.31 8.42 16 18 C -0.51 -30.17 9.14 25.60 0.23 -29.94 16 19 H 0.04 2.40 7.34 -2.92 -0.02 2.38 16 20 C 0.01 0.33 5.47 84.65 0.46 0.80 16 21 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 22 Si 0.94 44.42 27.47 68.60 1.88 46.30 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 28 H 0.06 1.38 7.53 -2.39 -0.02 1.36 16 29 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.16 1.88 6.30 -2.91 -0.02 1.86 16 32 H 0.09 1.42 7.65 -2.39 -0.02 1.40 16 33 H 0.10 1.30 7.68 -2.39 -0.02 1.28 16 34 H 0.38 7.88 9.05 -74.06 -0.67 7.21 16 35 H 0.05 1.22 8.05 -2.39 -0.02 1.20 16 36 H 0.11 2.11 7.82 -2.39 -0.02 2.09 16 37 H 0.04 1.82 7.02 -2.39 -0.02 1.81 16 38 H 0.02 0.67 8.07 -2.39 -0.02 0.65 16 39 H 0.09 2.33 7.88 -2.39 -0.02 2.31 16 40 H -0.01 -0.47 7.13 -2.39 -0.02 -0.48 16 41 H 0.02 1.16 5.77 -2.39 -0.01 1.14 16 42 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -73.64 359.42 -0.11 -73.75 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.31 Total: 14.32 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.52 Total: -20.07 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -4.02 Total: -85.52 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -2.72 Total: -27.59 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -73.64 -0.11 -73.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.919 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds