Wall clock time and date at job start Tue Mar 31 2020 10:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86791 * 120.00293 * 2 1 4 4 H 1.48499 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47265 * 300.00308 * 3 2 1 6 6 H 1.48503 * 109.47363 * 60.00245 * 3 2 1 7 7 C 1.38948 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99797 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99946 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99470 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.46718 * 180.02562 * 12 10 9 14 14 C 1.39915 * 119.99858 * 179.97438 * 13 12 10 15 15 C 1.38867 * 120.01494 * 180.02562 * 14 13 12 16 16 C 1.38096 * 119.97729 * 180.02562 * 15 14 13 17 17 C 1.38725 * 120.02066 * 359.97438 * 16 15 14 18 18 O 1.35994 * 119.98171 * 180.02562 * 17 16 15 19 19 C 1.35657 * 117.99893 * 76.90414 * 18 17 16 20 20 C 1.38949 * 119.68385 * 175.15040 * 19 18 17 21 21 C 1.38370 * 119.10739 * 179.77053 * 20 19 18 22 22 C 1.38833 * 118.48986 * 0.49096 * 21 20 19 23 23 C 1.38051 * 119.29067 * 359.50852 * 22 21 20 24 24 N 1.31956 * 120.83699 * 0.24899 * 23 22 21 25 25 C 1.38717 * 120.03405 * 0.27330 * 17 16 15 26 26 C 1.38100 * 120.01603 * 359.45742 * 25 17 16 27 27 H 0.96998 * 119.99777 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99820 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46858 * 60.00221 * 12 10 9 30 30 H 1.08995 * 109.47005 * 300.00246 * 12 10 9 31 31 H 0.96994 * 120.00163 * 359.97438 * 13 12 10 32 32 H 1.07997 * 120.01574 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.98981 * 179.97438 * 16 15 14 34 34 H 1.07996 * 120.44214 * 359.97438 * 20 19 18 35 35 H 1.08009 * 120.75260 * 180.24841 * 21 20 19 36 36 H 1.07995 * 120.35346 * 179.78190 * 22 21 20 37 37 H 1.08004 * 119.58095 * 180.23151 * 23 22 21 38 38 H 1.08003 * 119.99301 * 179.72014 * 25 17 16 39 39 H 1.08007 * 120.00507 * 180.29121 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2435 -4.8630 -0.0022 13 7 2.1955 -5.9766 -0.0027 14 6 1.7291 -7.2957 -0.0027 15 6 2.6312 -8.3514 -0.0026 16 6 2.1699 -9.6531 -0.0032 17 6 0.8060 -9.9061 -0.0033 18 8 0.3526 -11.1883 -0.0034 19 6 0.3961 -11.8792 1.1633 20 6 -0.1502 -13.1552 1.2281 21 6 -0.0950 -13.8511 2.4228 22 6 0.4983 -13.2393 3.5188 23 6 1.0208 -11.9687 3.3823 24 7 0.9577 -11.3318 2.2283 25 6 -0.0957 -8.8520 -0.0086 26 6 0.3639 -7.5498 -0.0024 27 1 -0.4850 0.8400 0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6166 -4.9201 -0.8920 30 1 0.6172 -4.9212 0.8880 31 1 3.1491 -5.7994 -0.0030 32 1 3.6931 -8.1547 -0.0030 33 1 2.8713 -10.4743 -0.0036 34 1 -0.6086 -13.5990 0.3568 35 1 -0.5077 -14.8461 2.5019 36 1 0.5546 -13.7536 4.4667 37 1 1.4867 -11.4899 4.2308 38 1 -1.1575 -9.0498 -0.0133 39 1 -0.3384 -6.7292 -0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426005765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:03 Heat of formation + Delta-G solvation = 3.629386 kcal Electronic energy + Delta-G solvation = -23658.921061 eV Core-core repulsion = 19953.241337 eV Total energy + Delta-G solvation = -3705.679724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05503 -39.52063 -38.57945 -37.68154 -34.73053 -33.90007 -32.70922 -31.44046 -31.03023 -30.78945 -29.01519 -26.58329 -24.57750 -23.93082 -23.50189 -22.70512 -21.33265 -19.49421 -18.88407 -18.11507 -17.53074 -17.32691 -16.26359 -16.22900 -15.52639 -15.29777 -14.97015 -14.84058 -14.71584 -14.44794 -14.04695 -13.92237 -13.54726 -13.44462 -13.30831 -12.99903 -12.48308 -12.28700 -12.25365 -12.10860 -11.86269 -11.63835 -11.17006 -10.75807 -10.43014 -10.34456 -10.19083 -9.85843 -9.76108 -9.66163 -8.88761 -8.76763 -8.65715 -8.13281 -7.16966 -6.54660 -3.96445 0.89721 1.02148 1.43370 1.51013 3.05058 3.08362 3.20664 3.27229 3.56107 3.60849 3.70513 4.02588 4.10672 4.14247 4.57418 4.76786 4.82541 4.86239 4.95647 4.96757 5.03646 5.13477 5.41902 5.43360 5.56510 5.65653 5.68580 5.72921 5.86011 5.90496 5.98829 6.08979 6.12940 6.34279 6.42185 6.56516 6.74949 7.36128 7.43678 7.52368 7.75673 7.90088 8.04282 8.42462 9.02280 9.36054 9.84248 10.62378 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.002029 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.128404 B =13793.884112 C =13844.330958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.429 3.571 11 O -0.594 6.594 12 C 0.111 3.889 13 N -0.721 5.721 14 C 0.236 3.764 15 C -0.189 4.189 16 C -0.057 4.057 17 C 0.012 3.988 18 O -0.243 6.243 19 C 0.317 3.683 20 C -0.192 4.192 21 C -0.045 4.045 22 C -0.216 4.216 23 C 0.139 3.861 24 N -0.523 5.523 25 C -0.062 4.062 26 C -0.194 4.194 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.412 0.588 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 -24.799 3.969 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.215 3.785 11 O -0.481 6.481 12 C -0.017 4.017 13 N -0.351 5.351 14 C 0.129 3.871 15 C -0.212 4.212 16 C -0.076 4.076 17 C -0.032 4.032 18 O -0.148 6.148 19 C 0.140 3.860 20 C -0.213 4.213 21 C -0.070 4.070 22 C -0.236 4.236 23 C -0.017 4.017 24 N -0.245 5.245 25 C -0.082 4.082 26 C -0.217 4.217 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.142 0.858 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.376 -23.649 3.624 24.042 hybrid contribution -0.214 0.214 0.221 0.374 sum -2.590 -23.435 3.845 23.889 Atomic orbital electron populations 1.69616 1.06000 1.28425 1.49535 1.25323 0.95689 0.99947 0.96810 0.85753 0.79705 0.80782 0.77838 1.19133 1.20595 1.20595 1.19780 0.93498 0.82001 1.48077 0.87657 1.41808 1.09403 1.04508 1.62859 1.19728 0.88336 0.84945 0.85531 1.90505 1.13791 1.86761 1.57004 1.20978 0.92203 0.86499 1.02065 1.44632 1.09810 1.01031 1.79603 1.17946 0.92803 0.84658 0.91688 1.20400 0.99103 0.90921 1.10746 1.20849 0.94083 0.96398 0.96256 1.18114 0.91932 0.81252 1.11886 1.84716 1.78349 1.24460 1.27316 1.20263 0.90890 0.89366 0.85526 1.21078 1.05980 0.93909 1.00342 1.21392 0.94754 0.99355 0.91510 1.22003 1.03821 0.97525 1.00275 1.22504 0.94006 0.91405 0.93788 1.67451 1.19305 1.37749 1.00034 1.20805 0.99087 0.91240 0.97033 1.20507 0.93724 0.96500 1.10922 0.91647 0.77124 0.90490 0.90530 0.74912 0.85646 0.86256 0.84147 0.84283 0.84674 0.82478 0.85837 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.65 13.05 55.50 0.72 -22.92 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 10 C 0.43 9.74 7.85 -10.98 -0.09 9.65 16 11 O -0.59 -15.44 15.24 5.55 0.08 -15.36 16 12 C 0.11 1.91 5.39 -5.19 -0.03 1.88 16 13 N -0.72 -11.94 5.71 -59.76 -0.34 -12.28 16 14 C 0.24 3.54 6.66 -83.70 -0.56 2.99 16 15 C -0.19 -2.63 9.89 -39.40 -0.39 -3.02 16 16 C -0.06 -0.76 9.56 -39.45 -0.38 -1.14 16 17 C 0.01 0.17 5.16 -39.22 -0.20 -0.03 16 18 O -0.24 -3.25 9.96 -3.16 -0.03 -3.29 16 19 C 0.32 3.85 7.41 -17.10 -0.13 3.73 16 20 C -0.19 -1.76 10.05 -39.27 -0.39 -2.16 16 21 C -0.04 -0.32 10.17 -39.31 -0.40 -0.71 16 22 C -0.22 -1.56 10.11 -39.43 -0.40 -1.96 16 23 C 0.14 1.30 11.18 -17.57 -0.20 1.11 16 24 N -0.52 -6.53 9.06 -13.32 -0.12 -6.65 16 25 C -0.06 -0.84 9.98 -39.46 -0.39 -1.23 16 26 C -0.19 -2.70 9.31 -39.40 -0.37 -3.07 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.40 9.15 7.90 -40.82 -0.32 8.83 16 29 H 0.08 1.20 7.95 -51.93 -0.41 0.78 16 30 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 31 H 0.41 7.23 7.45 -40.82 -0.30 6.93 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 36 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 38 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 39 H 0.13 1.64 6.73 -52.48 -0.35 1.29 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -31.42 346.91 -7.97 -39.39 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -4.28 Total: 15.72 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -4.16 Total: -1.79 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.20 Total: -55.37 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.05 Total: -18.64 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.42 -7.97 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426005765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.020 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds