Wall clock time and date at job start Tue Mar 31 2020 10:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86791 * 120.00293 * 2 1 4 4 H 1.48499 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47265 * 300.00308 * 3 2 1 6 6 H 1.48503 * 109.47363 * 60.00245 * 3 2 1 7 7 C 1.38948 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99797 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99946 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99470 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.46718 * 180.02562 * 12 10 9 14 14 C 1.39915 * 119.99858 * 179.97438 * 13 12 10 15 15 C 1.38867 * 120.01494 * 180.02562 * 14 13 12 16 16 C 1.38096 * 119.97729 * 180.02562 * 15 14 13 17 17 C 1.38725 * 120.02066 * 359.97438 * 16 15 14 18 18 O 1.35994 * 119.98171 * 180.02562 * 17 16 15 19 19 C 1.35657 * 117.99893 * 76.90414 * 18 17 16 20 20 C 1.38949 * 119.68385 * 175.15040 * 19 18 17 21 21 C 1.38370 * 119.10739 * 179.77053 * 20 19 18 22 22 C 1.38833 * 118.48986 * 0.49096 * 21 20 19 23 23 C 1.38051 * 119.29067 * 359.50852 * 22 21 20 24 24 N 1.31956 * 120.83699 * 0.24899 * 23 22 21 25 25 C 1.38717 * 120.03405 * 0.27330 * 17 16 15 26 26 C 1.38100 * 120.01603 * 359.45742 * 25 17 16 27 27 H 0.96998 * 119.99777 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99820 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46858 * 60.00221 * 12 10 9 30 30 H 1.08995 * 109.47005 * 300.00246 * 12 10 9 31 31 H 0.96994 * 120.00163 * 359.97438 * 13 12 10 32 32 H 1.07997 * 120.01574 * 359.97438 * 15 14 13 33 33 H 1.07999 * 119.98981 * 179.97438 * 16 15 14 34 34 H 1.07996 * 120.44214 * 359.97438 * 20 19 18 35 35 H 1.08009 * 120.75260 * 180.24841 * 21 20 19 36 36 H 1.07995 * 120.35346 * 179.78190 * 22 21 20 37 37 H 1.08004 * 119.58095 * 180.23151 * 23 22 21 38 38 H 1.08003 * 119.99301 * 179.72014 * 25 17 16 39 39 H 1.08007 * 120.00507 * 180.29121 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2435 -4.8630 -0.0022 13 7 2.1955 -5.9766 -0.0027 14 6 1.7291 -7.2957 -0.0027 15 6 2.6312 -8.3514 -0.0026 16 6 2.1699 -9.6531 -0.0032 17 6 0.8060 -9.9061 -0.0033 18 8 0.3526 -11.1883 -0.0034 19 6 0.3961 -11.8792 1.1633 20 6 -0.1502 -13.1552 1.2281 21 6 -0.0950 -13.8511 2.4228 22 6 0.4983 -13.2393 3.5188 23 6 1.0208 -11.9687 3.3823 24 7 0.9577 -11.3318 2.2283 25 6 -0.0957 -8.8520 -0.0086 26 6 0.3639 -7.5498 -0.0024 27 1 -0.4850 0.8400 0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6166 -4.9201 -0.8920 30 1 0.6172 -4.9212 0.8880 31 1 3.1491 -5.7994 -0.0030 32 1 3.6931 -8.1547 -0.0030 33 1 2.8713 -10.4743 -0.0036 34 1 -0.6086 -13.5990 0.3568 35 1 -0.5077 -14.8461 2.5019 36 1 0.5546 -13.7536 4.4667 37 1 1.4867 -11.4899 4.2308 38 1 -1.1575 -9.0498 -0.0133 39 1 -0.3384 -6.7292 -0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426005765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:02 Heat of formation + Delta-G solvation = -17.992657 kcal Electronic energy + Delta-G solvation = -23659.858663 eV Core-core repulsion = 19953.241337 eV Total energy + Delta-G solvation = -3706.617327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.89412 -40.65548 -40.06412 -38.79792 -36.29738 -35.53525 -33.39116 -33.37797 -32.06073 -31.62322 -30.23610 -28.00555 -26.25458 -24.71976 -24.27833 -23.82403 -22.37241 -21.20649 -20.04872 -19.77070 -18.80606 -18.21035 -17.38663 -17.15942 -16.84422 -16.56519 -16.36493 -16.18382 -15.97800 -15.50101 -15.37205 -15.07180 -14.82169 -14.46928 -14.35040 -14.02578 -13.92787 -13.60648 -13.43683 -13.20827 -13.13343 -12.92107 -12.78141 -12.46184 -12.13347 -11.76726 -11.59558 -10.97587 -10.85693 -10.55371 -10.51435 -10.10396 -9.94426 -9.50771 -8.52735 -8.33729 -6.02346 0.21583 0.33973 0.41103 0.44629 1.33742 1.41472 1.55095 1.91063 2.12648 2.20423 2.40978 2.85463 2.99137 3.14688 3.16001 3.43351 3.90130 3.98026 4.06529 4.12775 4.18240 4.25032 4.35830 4.38101 4.42973 4.48091 4.54763 4.71264 4.82623 5.01397 5.07007 5.14891 5.30426 5.31696 5.37004 5.50901 5.56286 5.76642 5.89468 6.25350 6.49414 6.56897 6.73362 6.99494 7.03612 7.44128 7.96183 8.64291 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.002029 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.128404 B =13793.884112 C =13844.330958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.560 5.560 10 C 0.430 3.570 11 O -0.630 6.630 12 C 0.126 3.874 13 N -0.731 5.731 14 C 0.218 3.782 15 C -0.190 4.190 16 C -0.063 4.063 17 C 0.013 3.987 18 O -0.257 6.257 19 C 0.284 3.716 20 C -0.195 4.195 21 C -0.039 4.039 22 C -0.202 4.202 23 C 0.117 3.883 24 N -0.557 5.557 25 C -0.070 4.070 26 C -0.193 4.193 27 H 0.280 0.720 28 H 0.400 0.600 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.405 0.595 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.140 0.860 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -26.533 4.815 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.196 5.196 10 C 0.217 3.783 11 O -0.518 6.518 12 C -0.002 4.002 13 N -0.361 5.361 14 C 0.114 3.886 15 C -0.213 4.213 16 C -0.082 4.082 17 C -0.031 4.031 18 O -0.163 6.163 19 C 0.107 3.893 20 C -0.216 4.216 21 C -0.065 4.065 22 C -0.222 4.222 23 C -0.038 4.038 24 N -0.280 5.280 25 C -0.089 4.089 26 C -0.216 4.216 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.242 0.758 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.186 0.814 37 H 0.190 0.810 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.499 -25.425 4.481 26.053 hybrid contribution 0.106 0.520 0.039 0.532 sum -3.393 -24.906 4.520 25.539 Atomic orbital electron populations 1.69667 1.06826 1.29542 1.49386 1.26082 0.96581 1.02529 0.95864 0.84841 0.78025 0.76904 0.78393 1.19767 1.19531 1.19528 1.19726 0.92832 0.83760 1.50371 0.90042 1.41840 1.09581 1.04528 1.63642 1.20644 0.88173 0.86252 0.83225 1.90478 1.15742 1.87646 1.57948 1.20862 0.91729 0.83576 1.03991 1.44552 1.09172 1.01361 1.81043 1.18065 0.93487 0.84030 0.93051 1.20544 0.99570 0.90910 1.10250 1.20961 0.94406 0.96435 0.96398 1.18313 0.92160 0.81965 1.10617 1.84653 1.78890 1.24128 1.28622 1.20537 0.93037 0.90477 0.85237 1.21390 1.05431 0.92871 1.01886 1.21880 0.93668 1.00560 0.90366 1.22398 1.01657 0.96472 1.01677 1.22926 0.94818 0.92680 0.93387 1.67351 1.20321 1.39202 1.01082 1.21007 0.99969 0.90957 0.96924 1.20683 0.93490 0.97153 1.10270 0.91051 0.76532 0.88343 0.88530 0.75755 0.84841 0.85514 0.82720 0.80564 0.81402 0.81041 0.84252 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.98 13.05 21.66 0.28 -47.70 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 3 Si 0.99 41.94 29.55 68.60 2.03 43.96 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.34 -18.68 9.68 84.04 0.81 -17.87 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.56 -27.80 5.29 -306.98 -1.62 -29.42 16 10 C 0.43 19.77 7.85 87.66 0.69 20.46 16 11 O -0.63 -33.62 15.24 -3.04 -0.05 -33.67 16 12 C 0.13 4.27 5.39 85.63 0.46 4.73 16 13 N -0.73 -24.13 5.71 -342.99 -1.96 -26.09 16 14 C 0.22 6.49 6.66 38.15 0.25 6.75 16 15 C -0.19 -5.30 9.89 22.39 0.22 -5.08 16 16 C -0.06 -1.70 9.56 22.35 0.21 -1.49 16 17 C 0.01 0.37 5.16 22.50 0.12 0.49 16 18 O -0.26 -6.85 9.96 -34.24 -0.34 -7.19 16 19 C 0.28 6.74 7.41 84.80 0.63 7.37 16 20 C -0.20 -3.23 10.05 22.47 0.23 -3.00 16 21 C -0.04 -0.43 10.17 22.44 0.23 -0.20 16 22 C -0.20 -2.30 10.11 22.37 0.23 -2.07 16 23 C 0.12 2.03 11.18 84.63 0.95 2.98 16 24 N -0.56 -13.66 9.06 -308.93 -2.80 -16.46 16 25 C -0.07 -1.82 9.98 22.35 0.22 -1.60 16 26 C -0.19 -5.23 9.31 22.39 0.21 -5.02 16 27 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 29 H 0.10 2.92 7.95 -2.39 -0.02 2.90 16 30 H 0.10 2.90 7.95 -2.39 -0.02 2.88 16 31 H 0.41 14.51 7.45 -92.71 -0.69 13.81 16 32 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.14 3.38 6.73 -2.91 -0.02 3.36 16 Total: -1.00 -69.04 346.91 1.15 -67.89 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -0.32 Total: 42.27 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.92 Total: 6.39 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.10 Total: -119.66 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.39 Total: -40.85 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -69.04 1.15 -67.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426005765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.895 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds