Wall clock time and date at job start Tue Mar 31 2020 10:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39679 * 120.11382 * 308.47033 * 3 2 1 5 5 C 1.37980 * 119.99849 * 179.97438 * 4 3 2 6 6 C 1.38244 * 120.23390 * 359.72309 * 5 4 3 7 7 C 1.39004 * 120.22766 * 0.55060 * 6 5 4 8 8 N 1.39758 * 120.00089 * 179.71935 * 7 6 5 9 9 C 1.34777 * 120.00098 * 213.59035 * 8 7 6 10 10 O 1.21379 * 120.00012 * 5.24853 * 9 8 7 11 11 C 1.49353 * 120.00137 * 185.23612 * 9 8 7 12 12 O 1.21360 * 119.99663 * 5.08735 * 11 9 8 13 13 N 1.34776 * 119.99915 * 185.08346 * 11 9 8 14 14 C 1.46502 * 119.99455 * 184.98916 * 13 11 9 15 15 C 1.53003 * 109.46858 * 184.83138 * 14 13 11 16 16 C 1.50705 * 115.55011 * 304.31497 * 15 14 13 17 17 H 1.07998 * 119.99804 * 95.10105 * 16 15 14 18 18 C 1.37874 * 119.99857 * 274.83185 * 16 15 14 19 19 N 1.31514 * 120.00155 * 355.39076 * 18 16 15 20 20 Si 1.86798 * 119.99919 * 175.39595 * 18 16 15 21 21 H 1.48505 * 109.47265 * 59.99681 * 20 18 16 22 22 H 1.48502 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47169 * 299.99772 * 20 18 16 24 24 C 1.53002 * 117.50016 * 89.98287 * 15 14 13 25 25 C 1.52997 * 117.49943 * 158.64728 * 15 14 13 26 26 C 1.38687 * 119.99781 * 359.45068 * 7 6 5 27 27 H 1.07996 * 120.00366 * 359.94964 * 4 3 2 28 28 H 1.08005 * 119.88408 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.88439 * 180.27880 * 6 5 4 30 30 H 0.97000 * 119.99878 * 33.60367 * 8 7 6 31 31 H 0.96990 * 119.99979 * 4.98716 * 13 11 9 32 32 H 1.09000 * 109.47324 * 64.83162 * 14 13 11 33 33 H 1.08995 * 109.47504 * 304.82644 * 14 13 11 34 34 H 0.97000 * 120.00258 * 185.00710 * 19 18 16 35 35 H 1.09003 * 117.49739 * 215.00389 * 24 15 14 36 36 H 1.09002 * 117.49707 * 0.02778 * 24 15 14 37 37 H 1.09001 * 117.49792 * 359.97380 * 25 15 14 38 38 H 1.08998 * 117.50094 * 144.97289 * 25 15 14 39 39 H 1.07996 * 120.11370 * 180.25246 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2692 -0.7507 0.9460 5 6 4.6490 -0.7488 0.9435 6 6 5.3424 -0.0095 0.0033 7 6 4.6543 0.7461 -0.9389 8 7 5.3601 1.4964 -1.8835 9 6 4.8639 2.6718 -2.3178 10 8 3.8537 3.1251 -1.8203 11 6 5.5570 3.4169 -3.4110 12 8 6.5129 2.9217 -3.9713 13 7 5.1210 4.6390 -3.7751 14 6 5.7301 5.3234 -4.9184 15 6 5.1417 6.7302 -5.0432 16 6 3.6403 6.7994 -5.1533 17 1 3.0410 6.9621 -4.2697 18 6 3.0321 6.6606 -6.3828 19 7 3.7640 6.5587 -7.4707 20 14 1.1686 6.6174 -6.5035 21 1 0.6083 7.8838 -5.9669 22 1 0.7679 6.4625 -7.9250 23 1 0.6478 5.4722 -5.7144 24 6 5.8478 7.8605 -4.2917 25 6 5.9554 7.7702 -5.8160 26 6 3.2675 0.7512 -0.9451 27 1 2.7314 -1.3328 1.6796 28 1 5.1893 -1.3308 1.6755 29 1 6.4223 -0.0157 0.0037 30 1 6.2070 1.1710 -2.2267 31 1 4.4039 5.0654 -3.2804 32 1 5.5250 4.7615 -5.8296 33 1 6.8075 5.3922 -4.7687 34 1 3.3376 6.5342 -8.3416 35 1 5.2263 8.6542 -3.8769 36 1 6.7317 7.6020 -3.7086 37 1 6.9100 7.4523 -6.2351 38 1 5.4048 8.5042 -6.4043 39 1 2.7310 1.3344 -1.6789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430379185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:14 Heat of formation + Delta-G solvation = 15.707662 kcal Electronic energy + Delta-G solvation = -24355.171331 eV Core-core repulsion = 20650.015360 eV Total energy + Delta-G solvation = -3705.155971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09397 -39.54669 -38.26029 -36.81106 -36.70636 -35.17620 -33.45653 -32.03369 -31.67271 -30.24554 -27.20205 -25.56792 -24.43482 -24.32413 -22.29401 -21.20011 -20.10230 -19.73214 -19.44754 -18.06662 -16.86279 -16.68380 -16.24611 -16.04146 -15.75952 -15.31546 -14.80390 -14.73745 -14.35436 -14.23011 -13.94385 -13.83263 -13.40321 -13.23100 -13.05201 -12.79695 -12.71037 -12.19790 -12.01872 -11.94536 -11.69324 -11.39016 -11.04049 -10.98324 -10.75244 -10.57742 -10.29293 -9.72146 -9.45023 -9.29534 -9.14139 -8.65146 -8.57054 -8.48067 -8.21121 -6.14209 -4.24835 0.39633 0.82617 1.60024 2.30117 2.50453 2.68393 3.25900 3.31201 3.34871 3.35152 3.54715 3.60504 3.83257 4.31670 4.48246 4.65992 4.70005 4.72614 5.00067 5.08468 5.13411 5.27077 5.41328 5.76036 5.85258 5.89141 5.93523 5.98120 6.20389 6.34102 6.39121 6.46486 6.59439 6.68931 6.80865 6.96903 7.03195 7.23631 7.26291 7.43953 7.59132 7.75625 7.95628 8.24372 8.37174 8.77648 9.43907 10.92565 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.003378 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.228435 B = 8286.725907 C = 9733.183851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.256 3.744 3 C -0.007 4.007 4 C -0.088 4.088 5 C -0.099 4.099 6 C -0.114 4.114 7 C 0.152 3.848 8 N -0.652 5.652 9 C 0.509 3.491 10 O -0.493 6.493 11 C 0.497 3.503 12 O -0.538 6.538 13 N -0.658 5.658 14 C 0.158 3.842 15 C 0.021 3.979 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.076 3.924 19 N -0.874 5.874 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.210 4.210 25 C -0.139 4.139 26 C -0.075 4.075 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.426 0.574 31 H 0.416 0.584 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.263 0.737 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 -13.368 14.143 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.060 4.060 3 C -0.011 4.011 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.135 4.135 7 C 0.057 3.943 8 N -0.300 5.300 9 C 0.292 3.708 10 O -0.365 6.365 11 C 0.276 3.724 12 O -0.417 6.417 13 N -0.308 5.308 14 C 0.036 3.964 15 C 0.020 3.980 16 C -0.542 4.542 17 H 0.080 0.920 18 C -0.128 4.128 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.247 4.247 25 C -0.177 4.177 26 C -0.098 4.098 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.264 0.736 31 H 0.254 0.746 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.379 -13.375 13.778 19.695 hybrid contribution -0.511 0.121 -0.244 0.579 sum 3.868 -13.254 13.534 19.334 Atomic orbital electron populations 1.81261 1.12008 1.07946 1.07563 1.25611 0.92583 0.93857 0.93944 1.15768 0.84442 1.01672 0.99238 1.21157 0.94410 0.97879 0.97476 1.20877 0.93388 0.99045 0.98464 1.21188 1.00709 0.98051 0.93537 1.17516 0.90785 0.94652 0.91356 1.43224 1.25561 1.20095 1.41090 1.20791 0.85262 0.81301 0.83476 1.90808 1.23909 1.66739 1.55079 1.19616 0.84947 0.83519 0.84328 1.90738 1.27039 1.68059 1.55837 1.45900 1.37655 1.15372 1.31886 1.21210 0.94342 0.94329 0.86513 1.19012 0.94002 0.85256 0.99753 1.20327 0.88618 1.51512 0.93777 0.92005 1.24971 0.98035 0.94008 0.95825 1.69968 1.35275 1.48028 0.97704 0.86700 0.85612 0.78884 0.77128 1.20144 1.21219 1.19981 1.23072 1.01994 1.04389 0.95281 1.22470 0.99635 1.03876 0.91757 1.21234 0.92799 0.97363 0.98397 0.84790 0.84328 0.84520 0.73557 0.74647 0.90745 0.93186 0.92722 0.90219 0.91609 0.91704 0.89367 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.92 18.54 41.84 0.78 -5.15 16 2 C 0.26 3.06 15.33 -22.47 -0.34 2.72 16 3 C -0.01 -0.07 5.73 -106.96 -0.61 -0.68 16 4 C -0.09 -0.59 9.75 -39.14 -0.38 -0.98 16 5 C -0.10 -0.54 10.02 -39.67 -0.40 -0.94 16 6 C -0.11 -0.75 9.95 -39.29 -0.39 -1.15 16 7 C 0.15 1.49 6.26 -83.79 -0.52 0.96 16 8 N -0.65 -7.10 5.32 -10.33 -0.05 -7.16 16 9 C 0.51 7.44 7.61 -11.63 -0.09 7.36 16 10 O -0.49 -8.20 14.21 5.47 0.08 -8.12 16 11 C 0.50 8.50 7.88 -11.63 -0.09 8.41 16 12 O -0.54 -9.87 16.48 5.49 0.09 -9.78 16 13 N -0.66 -12.42 5.40 -60.76 -0.33 -12.75 16 14 C 0.16 3.33 5.58 -4.04 -0.02 3.30 16 15 C 0.02 0.46 1.61 -155.66 -0.25 0.21 16 16 C -0.50 -12.69 8.13 -34.44 -0.28 -12.97 16 17 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 18 C 0.08 1.98 5.43 -17.82 -0.10 1.88 16 19 N -0.87 -23.50 12.64 55.43 0.70 -22.80 16 20 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.21 -4.23 9.93 -26.69 -0.27 -4.49 16 25 C -0.14 -3.05 9.17 -26.69 -0.24 -3.29 16 26 C -0.08 -0.84 8.36 -38.95 -0.33 -1.17 16 27 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 28 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 29 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.43 3.78 8.32 -40.82 -0.34 3.44 16 31 H 0.42 7.89 7.49 -40.82 -0.31 7.58 16 32 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 34 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 39 H 0.15 1.94 6.45 -52.49 -0.34 1.61 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -29.81 355.53 -7.05 -36.86 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.33 Total: 8.85 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -4.32 Total: -0.83 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 1.09 Total: -47.85 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.81 -7.05 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430379185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.563 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds