Wall clock time and date at job start Tue Mar 31 2020 10:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39679 * 120.11382 * 308.47033 * 3 2 1 5 5 C 1.37980 * 119.99849 * 179.97438 * 4 3 2 6 6 C 1.38244 * 120.23390 * 359.72309 * 5 4 3 7 7 C 1.39004 * 120.22766 * 0.55060 * 6 5 4 8 8 N 1.39758 * 120.00089 * 179.71935 * 7 6 5 9 9 C 1.34777 * 120.00098 * 213.59035 * 8 7 6 10 10 O 1.21379 * 120.00012 * 5.24853 * 9 8 7 11 11 C 1.49353 * 120.00137 * 185.23612 * 9 8 7 12 12 O 1.21360 * 119.99663 * 5.08735 * 11 9 8 13 13 N 1.34776 * 119.99915 * 185.08346 * 11 9 8 14 14 C 1.46502 * 119.99455 * 184.98916 * 13 11 9 15 15 C 1.53003 * 109.46858 * 184.83138 * 14 13 11 16 16 C 1.50705 * 115.55011 * 304.31497 * 15 14 13 17 17 H 1.07998 * 119.99804 * 95.10105 * 16 15 14 18 18 C 1.37874 * 119.99857 * 274.83185 * 16 15 14 19 19 N 1.31514 * 120.00155 * 355.39076 * 18 16 15 20 20 Si 1.86798 * 119.99919 * 175.39595 * 18 16 15 21 21 H 1.48505 * 109.47265 * 59.99681 * 20 18 16 22 22 H 1.48502 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47169 * 299.99772 * 20 18 16 24 24 C 1.53002 * 117.50016 * 89.98287 * 15 14 13 25 25 C 1.52997 * 117.49943 * 158.64728 * 15 14 13 26 26 C 1.38687 * 119.99781 * 359.45068 * 7 6 5 27 27 H 1.07996 * 120.00366 * 359.94964 * 4 3 2 28 28 H 1.08005 * 119.88408 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.88439 * 180.27880 * 6 5 4 30 30 H 0.97000 * 119.99878 * 33.60367 * 8 7 6 31 31 H 0.96990 * 119.99979 * 4.98716 * 13 11 9 32 32 H 1.09000 * 109.47324 * 64.83162 * 14 13 11 33 33 H 1.08995 * 109.47504 * 304.82644 * 14 13 11 34 34 H 0.97000 * 120.00258 * 185.00710 * 19 18 16 35 35 H 1.09003 * 117.49739 * 215.00389 * 24 15 14 36 36 H 1.09002 * 117.49707 * 0.02778 * 24 15 14 37 37 H 1.09001 * 117.49792 * 359.97380 * 25 15 14 38 38 H 1.08998 * 117.50094 * 144.97289 * 25 15 14 39 39 H 1.07996 * 120.11370 * 180.25246 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2692 -0.7507 0.9460 5 6 4.6490 -0.7488 0.9435 6 6 5.3424 -0.0095 0.0033 7 6 4.6543 0.7461 -0.9389 8 7 5.3601 1.4964 -1.8835 9 6 4.8639 2.6718 -2.3178 10 8 3.8537 3.1251 -1.8203 11 6 5.5570 3.4169 -3.4110 12 8 6.5129 2.9217 -3.9713 13 7 5.1210 4.6390 -3.7751 14 6 5.7301 5.3234 -4.9184 15 6 5.1417 6.7302 -5.0432 16 6 3.6403 6.7994 -5.1533 17 1 3.0410 6.9621 -4.2697 18 6 3.0321 6.6606 -6.3828 19 7 3.7640 6.5587 -7.4707 20 14 1.1686 6.6174 -6.5035 21 1 0.6083 7.8838 -5.9669 22 1 0.7679 6.4625 -7.9250 23 1 0.6478 5.4722 -5.7144 24 6 5.8478 7.8605 -4.2917 25 6 5.9554 7.7702 -5.8160 26 6 3.2675 0.7512 -0.9451 27 1 2.7314 -1.3328 1.6796 28 1 5.1893 -1.3308 1.6755 29 1 6.4223 -0.0157 0.0037 30 1 6.2070 1.1710 -2.2267 31 1 4.4039 5.0654 -3.2804 32 1 5.5250 4.7615 -5.8296 33 1 6.8075 5.3922 -4.7687 34 1 3.3376 6.5342 -8.3416 35 1 5.2263 8.6542 -3.8769 36 1 6.7317 7.6020 -3.7086 37 1 6.9100 7.4523 -6.2351 38 1 5.4048 8.5042 -6.4043 39 1 2.7310 1.3344 -1.6789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430379185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:13 Heat of formation + Delta-G solvation = -3.353636 kcal Electronic energy + Delta-G solvation = -24355.997891 eV Core-core repulsion = 20650.015360 eV Total energy + Delta-G solvation = -3705.982531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15170 -40.58927 -39.44172 -38.47527 -37.69014 -36.17306 -34.93263 -33.98939 -32.33769 -31.03829 -28.72797 -27.44662 -25.58370 -25.08862 -23.21924 -22.85280 -21.47348 -21.15733 -20.47998 -19.36274 -18.09333 -17.90227 -17.35257 -17.08144 -16.83813 -16.70951 -16.41749 -16.03512 -15.70972 -15.23405 -15.12204 -14.96020 -14.60684 -14.44522 -14.25470 -13.96984 -13.73498 -13.55037 -13.50426 -13.03398 -12.96320 -12.86048 -12.65405 -12.43374 -12.39756 -12.00186 -11.59332 -11.42552 -10.98788 -10.80223 -10.46987 -10.18194 -9.98444 -9.92210 -9.32676 -8.13143 -6.26421 -0.29908 -0.01284 0.55681 1.22140 1.38958 1.42392 1.47147 1.54382 1.84940 2.10814 2.38662 2.57730 2.82932 2.86420 3.14735 3.35990 3.56916 3.89636 4.09497 4.12447 4.20356 4.38275 4.41048 4.51210 4.64615 4.68234 4.78250 4.93015 5.03667 5.10667 5.17644 5.28355 5.29762 5.34472 5.36806 5.51798 5.69272 5.75393 5.81734 5.92067 6.33943 6.35439 6.41095 6.68173 6.80848 6.92864 7.43663 8.93024 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.003378 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.228435 B = 8286.725907 C = 9733.183851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.276 3.724 3 C -0.026 4.026 4 C -0.069 4.069 5 C -0.085 4.085 6 C -0.092 4.092 7 C 0.126 3.874 8 N -0.631 5.631 9 C 0.515 3.485 10 O -0.519 6.519 11 C 0.500 3.500 12 O -0.549 6.549 13 N -0.667 5.667 14 C 0.174 3.826 15 C -0.003 4.003 16 C -0.509 4.509 17 H 0.057 0.943 18 C 0.034 3.966 19 N -0.900 5.900 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.279 1.279 24 C -0.182 4.182 25 C -0.146 4.146 26 C -0.094 4.094 27 H 0.161 0.839 28 H 0.183 0.817 29 H 0.170 0.830 30 H 0.436 0.564 31 H 0.415 0.585 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 -15.169 16.843 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.039 4.039 3 C -0.030 4.030 4 C -0.090 4.090 5 C -0.103 4.103 6 C -0.112 4.112 7 C 0.032 3.968 8 N -0.279 5.279 9 C 0.297 3.703 10 O -0.394 6.394 11 C 0.280 3.720 12 O -0.429 6.429 13 N -0.316 5.316 14 C 0.050 3.950 15 C -0.004 4.004 16 C -0.547 4.547 17 H 0.075 0.925 18 C -0.168 4.168 19 N -0.537 5.537 20 Si 0.766 3.234 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.205 1.205 24 C -0.219 4.219 25 C -0.184 4.184 26 C -0.117 4.117 27 H 0.178 0.822 28 H 0.201 0.799 29 H 0.187 0.813 30 H 0.277 0.723 31 H 0.252 0.748 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.253 -15.213 16.501 23.299 hybrid contribution -0.995 0.579 -0.985 1.516 sum 5.258 -14.634 15.516 21.967 Atomic orbital electron populations 1.81263 1.13525 1.09964 1.09451 1.26048 0.93049 0.92327 0.92427 1.15848 0.83132 1.03424 1.00642 1.21555 0.95296 0.96037 0.96136 1.21390 0.92691 0.97978 0.98245 1.21605 1.02353 0.95607 0.91658 1.17694 0.90276 0.96172 0.92639 1.43020 1.25573 1.18657 1.40699 1.20215 0.84837 0.82248 0.83010 1.90811 1.24919 1.67716 1.55950 1.20011 0.84535 0.82886 0.84574 1.90720 1.27590 1.68141 1.56428 1.45816 1.37955 1.16259 1.31584 1.20839 0.94958 0.93105 0.86061 1.19065 0.93023 0.86600 1.01713 1.20606 0.90341 1.50324 0.93403 0.92462 1.25546 1.01050 0.94299 0.95874 1.70059 1.36298 1.49546 0.97835 0.85916 0.82081 0.78642 0.76789 1.19618 1.21233 1.20489 1.23063 1.02149 1.02539 0.94135 1.22388 0.99775 1.03291 0.92954 1.21048 0.93725 0.98244 0.98715 0.82169 0.79946 0.81261 0.72299 0.74785 0.94032 0.91931 0.93045 0.90172 0.88893 0.90452 0.91774 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.79 18.54 19.01 0.35 -13.44 16 2 C 0.28 6.67 15.33 88.33 1.35 8.02 16 3 C -0.03 -0.48 5.73 -21.38 -0.12 -0.61 16 4 C -0.07 -0.67 9.75 22.56 0.22 -0.45 16 5 C -0.08 -0.46 10.02 22.21 0.22 -0.23 16 6 C -0.09 -0.80 9.95 22.46 0.22 -0.57 16 7 C 0.13 2.22 6.26 38.17 0.24 2.46 16 8 N -0.63 -12.88 5.32 -304.93 -1.62 -14.50 16 9 C 0.51 15.00 7.61 87.24 0.66 15.67 16 10 O -0.52 -17.67 14.21 -3.34 -0.05 -17.72 16 11 C 0.50 17.08 7.88 87.24 0.69 17.76 16 12 O -0.55 -19.90 16.48 -3.28 -0.05 -19.95 16 13 N -0.67 -25.38 5.40 -464.50 -2.51 -27.89 16 14 C 0.17 7.35 5.58 86.38 0.48 7.83 16 15 C 0.00 -0.15 1.61 -52.93 -0.09 -0.23 16 16 C -0.51 -25.95 8.13 25.60 0.21 -25.75 16 17 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 18 C 0.03 1.79 5.43 84.65 0.46 2.25 16 19 N -0.90 -49.58 12.64 21.45 0.27 -49.31 16 20 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 C -0.18 -7.07 9.93 30.62 0.30 -6.77 16 25 C -0.15 -6.38 9.17 30.62 0.28 -6.10 16 26 C -0.09 -2.09 8.36 22.68 0.19 -1.91 16 27 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 28 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 29 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 30 H 0.44 6.83 8.32 -92.71 -0.77 6.06 16 31 H 0.42 16.01 7.49 -92.72 -0.69 15.32 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 34 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 35 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.11 3.24 6.45 -2.91 -0.02 3.22 16 Total: -1.00 -67.61 355.53 3.40 -64.21 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.34 Total: 22.21 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.33 Total: 11.37 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.51 Total: -105.14 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.10 Total: -37.67 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.61 3.40 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430379185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.854 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds