Wall clock time and date at job start Tue Mar 31 2020 10:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47276 * 269.99597 * 3 2 1 5 5 H 1.48499 * 109.47255 * 30.00062 * 3 2 1 6 6 H 1.48507 * 109.46823 * 150.00104 * 3 2 1 7 7 C 1.37880 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99915 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47097 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.35906 * 116.99866 * 179.97438 * 11 10 9 13 13 C 1.38805 * 120.01697 * 359.72733 * 12 11 10 14 14 C 1.38182 * 120.08566 * 179.71943 * 13 12 11 15 15 C 1.38156 * 120.13076 * 0.55461 * 14 13 12 16 16 C 1.38923 * 120.03099 * 359.72149 * 15 14 13 17 17 N 1.39815 * 120.04267 * 179.97438 * 16 15 14 18 18 C 1.34781 * 120.00083 * 213.36811 * 17 16 15 19 19 O 1.21495 * 119.99736 * 5.26761 * 18 17 16 20 20 C 1.48398 * 120.00038 * 185.27399 * 18 17 16 21 21 C 1.39562 * 120.55232 * 179.97438 * 20 18 17 22 22 C 1.38742 * 118.26559 * 179.97438 * 21 20 18 23 23 N 1.32210 * 119.15054 * 0.02562 * 22 21 20 24 24 C 1.31889 * 121.03834 * 359.97438 * 23 22 21 25 25 N 1.31577 * 121.91848 * 359.74008 * 24 23 22 26 26 C 1.38578 * 120.01818 * 179.97438 * 12 11 10 27 27 H 0.96998 * 119.99880 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47019 * 60.00007 * 9 7 2 29 29 H 1.09004 * 109.47015 * 300.00642 * 9 7 2 30 30 H 1.08996 * 109.47243 * 60.00367 * 10 9 7 31 31 H 1.09004 * 109.47374 * 300.00008 * 10 9 7 32 32 H 1.07999 * 119.96032 * 359.97061 * 13 12 11 33 33 H 1.08001 * 119.93546 * 180.25434 * 14 13 12 34 34 H 1.07995 * 119.98727 * 179.69907 * 15 14 13 35 35 H 0.97003 * 120.00113 * 33.35492 * 17 16 15 36 36 H 1.08001 * 120.86575 * 359.97438 * 21 20 18 37 37 H 1.08005 * 120.43014 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.03740 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.06282 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 8 5.4504 -2.6367 0.0001 12 6 6.0673 -3.8477 0.0008 13 6 5.3116 -5.0120 0.0071 14 6 5.9374 -6.2440 0.0019 15 6 7.3168 -6.3212 0.0020 16 6 8.0782 -5.1592 0.0015 17 7 9.4742 -5.2371 0.0021 18 6 10.2011 -4.3008 0.6437 19 8 9.6439 -3.4443 1.3010 20 6 11.6818 -4.3162 0.5472 21 6 12.4457 -3.3520 1.2064 22 6 13.8265 -3.4114 1.0842 23 7 14.3676 -4.3709 0.3531 24 6 13.6162 -5.2668 -0.2570 25 7 12.3038 -5.2529 -0.1650 26 6 7.4512 -3.9207 0.0003 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6798 0.8894 29 1 3.8745 -0.6808 -0.8905 30 1 3.6578 -3.1507 -0.8896 31 1 3.6584 -3.1503 0.8903 32 1 4.2332 -4.9550 0.0119 33 1 5.3470 -7.1483 0.0027 34 1 7.8034 -7.2853 0.0029 35 1 9.9196 -5.9650 -0.4591 36 1 11.9744 -2.5798 1.7963 37 1 14.4514 -2.6831 1.5798 38 1 14.0924 -6.0369 -0.8457 39 1 8.0407 -3.0158 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488678142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:36 Heat of formation + Delta-G solvation = 7.642305 kcal Electronic energy + Delta-G solvation = -23802.026390 eV Core-core repulsion = 20096.520678 eV Total energy + Delta-G solvation = -3705.505711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80132 -40.55181 -39.32271 -37.33400 -34.99616 -34.24894 -33.32248 -32.67939 -31.14456 -29.94837 -29.24056 -26.24360 -25.21117 -24.93586 -23.21924 -22.17916 -21.36192 -20.28860 -19.10498 -18.45045 -17.90931 -16.80225 -16.26471 -16.12026 -16.00158 -15.96680 -15.62813 -15.45080 -15.28253 -14.66019 -14.45242 -14.24779 -14.08959 -13.48919 -13.24493 -12.94534 -12.57673 -11.97904 -11.87770 -11.62148 -11.57601 -11.41728 -11.08732 -10.93732 -10.61323 -10.41379 -10.34315 -10.16727 -9.97517 -9.89131 -9.80457 -9.34104 -8.62003 -8.38495 -7.92978 -6.13212 -4.14032 -0.12158 0.32767 1.26967 1.54336 2.32353 2.42446 3.26091 3.28732 3.29429 3.36655 3.42970 3.54690 3.70233 3.87785 4.03602 4.25926 4.39869 4.45709 4.91421 4.95185 5.02752 5.11147 5.21024 5.27712 5.35553 5.56706 5.64985 5.71140 5.91445 5.92296 6.09104 6.22319 6.24969 6.40476 6.45542 6.59965 6.80869 7.00216 7.09565 7.23963 7.34956 7.62420 7.63656 7.89907 8.38906 8.87357 9.47185 10.99223 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.002457 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.187276 B =11391.357924 C =12668.175971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.072 3.928 11 O -0.316 6.316 12 C 0.164 3.836 13 C -0.220 4.220 14 C -0.060 4.060 15 C -0.189 4.189 16 C 0.173 3.827 17 N -0.648 5.648 18 C 0.567 3.433 19 O -0.492 6.492 20 C 0.133 3.867 21 C -0.166 4.166 22 C 0.153 3.847 23 N -0.506 5.506 24 C 0.295 3.705 25 N -0.498 5.498 26 C -0.163 4.163 27 H 0.266 0.734 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.421 0.579 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.205 0.795 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.591 -13.681 0.071 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.002 4.002 11 O -0.229 6.229 12 C 0.116 3.884 13 C -0.240 4.240 14 C -0.078 4.078 15 C -0.209 4.209 16 C 0.079 3.921 17 N -0.293 5.293 18 C 0.351 3.649 19 O -0.364 6.364 20 C -0.015 4.015 21 C -0.188 4.188 22 C -0.014 4.014 23 N -0.220 5.220 24 C 0.007 3.993 25 N -0.215 5.215 26 C -0.184 4.184 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.259 0.741 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.221 0.779 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 27.529 -13.426 0.010 30.629 hybrid contribution 0.013 0.959 0.214 0.983 sum 27.542 -12.467 0.224 30.233 Atomic orbital electron populations 1.69894 1.06258 1.27206 1.50212 1.24934 0.94772 0.99219 0.94116 0.86759 0.80504 0.83270 0.78764 1.20074 1.21176 1.18700 1.20834 0.88296 0.94935 1.52336 0.90717 1.19592 0.96914 0.90238 0.97960 1.23114 0.74453 1.02032 1.00610 1.86142 1.24118 1.25715 1.86925 1.18872 0.91558 0.85354 0.92606 1.21443 1.00996 0.92194 1.09331 1.20699 0.93493 0.97213 0.96432 1.20653 0.93994 0.96410 1.09878 1.17258 0.81305 0.93609 0.99896 1.43179 1.04800 1.28730 1.52572 1.17891 0.85130 0.82145 0.79747 1.90904 1.70808 1.36075 1.38577 1.21504 0.94575 0.91910 0.93483 1.23067 0.95827 1.00192 0.99738 1.23432 0.92345 0.94086 0.91553 1.68398 1.41907 1.03799 1.07880 1.25035 0.85409 0.95221 0.93608 1.68334 1.12991 1.23407 1.16742 1.20227 0.92152 0.97536 1.08447 0.92458 0.95341 0.95832 0.92378 0.92352 0.84744 0.85379 0.85803 0.74066 0.81780 0.80315 0.77881 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.53 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.24 4.41 -27.89 -0.12 -0.36 16 10 C 0.07 1.50 4.68 37.16 0.17 1.67 16 11 O -0.32 -6.40 10.13 -19.45 -0.20 -6.59 16 12 C 0.16 2.86 6.68 -39.25 -0.26 2.59 16 13 C -0.22 -3.32 9.04 -39.39 -0.36 -3.67 16 14 C -0.06 -0.72 10.03 -39.63 -0.40 -1.12 16 15 C -0.19 -2.16 9.96 -39.36 -0.39 -2.55 16 16 C 0.17 2.27 6.27 -83.75 -0.53 1.74 16 17 N -0.65 -6.92 5.33 -10.58 -0.06 -6.98 16 18 C 0.57 6.65 7.56 -12.07 -0.09 6.56 16 19 O -0.49 -7.39 14.11 5.37 0.08 -7.31 16 20 C 0.13 1.23 6.79 -82.64 -0.56 0.67 16 21 C -0.17 -1.23 9.72 -38.90 -0.38 -1.61 16 22 C 0.15 0.90 11.31 -17.20 -0.19 0.71 16 23 N -0.51 -3.60 10.42 -14.60 -0.15 -3.75 16 24 C 0.30 1.91 12.28 -92.26 -1.13 0.78 16 25 N -0.50 -3.99 9.71 -11.14 -0.11 -4.10 16 26 C -0.16 -2.63 8.59 -39.24 -0.34 -2.97 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 29 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 30 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16 31 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 32 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.42 3.38 8.21 -40.82 -0.34 3.04 16 36 H 0.16 1.10 7.74 -52.49 -0.41 0.69 16 37 H 0.18 0.44 8.06 -52.48 -0.42 0.02 16 38 H 0.20 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 2.38 6.42 -52.49 -0.34 2.04 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -34.13 341.61 -8.44 -42.57 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.25 Total: 1.26 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -5.01 Total: -10.78 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.46 Total: -41.39 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.12 Total: -13.90 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.13 -8.44 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488678142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.209 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds