Wall clock time and date at job start Tue Mar 31 2020 10:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47276 * 269.99597 * 3 2 1 5 5 H 1.48499 * 109.47255 * 30.00062 * 3 2 1 6 6 H 1.48507 * 109.46823 * 150.00104 * 3 2 1 7 7 C 1.37880 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99915 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47097 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.35906 * 116.99866 * 179.97438 * 11 10 9 13 13 C 1.38805 * 120.01697 * 359.72733 * 12 11 10 14 14 C 1.38182 * 120.08566 * 179.71943 * 13 12 11 15 15 C 1.38156 * 120.13076 * 0.55461 * 14 13 12 16 16 C 1.38923 * 120.03099 * 359.72149 * 15 14 13 17 17 N 1.39815 * 120.04267 * 179.97438 * 16 15 14 18 18 C 1.34781 * 120.00083 * 213.36811 * 17 16 15 19 19 O 1.21495 * 119.99736 * 5.26761 * 18 17 16 20 20 C 1.48398 * 120.00038 * 185.27399 * 18 17 16 21 21 C 1.39562 * 120.55232 * 179.97438 * 20 18 17 22 22 C 1.38742 * 118.26559 * 179.97438 * 21 20 18 23 23 N 1.32210 * 119.15054 * 0.02562 * 22 21 20 24 24 C 1.31889 * 121.03834 * 359.97438 * 23 22 21 25 25 N 1.31577 * 121.91848 * 359.74008 * 24 23 22 26 26 C 1.38578 * 120.01818 * 179.97438 * 12 11 10 27 27 H 0.96998 * 119.99880 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47019 * 60.00007 * 9 7 2 29 29 H 1.09004 * 109.47015 * 300.00642 * 9 7 2 30 30 H 1.08996 * 109.47243 * 60.00367 * 10 9 7 31 31 H 1.09004 * 109.47374 * 300.00008 * 10 9 7 32 32 H 1.07999 * 119.96032 * 359.97061 * 13 12 11 33 33 H 1.08001 * 119.93546 * 180.25434 * 14 13 12 34 34 H 1.07995 * 119.98727 * 179.69907 * 15 14 13 35 35 H 0.97003 * 120.00113 * 33.35492 * 17 16 15 36 36 H 1.08001 * 120.86575 * 359.97438 * 21 20 18 37 37 H 1.08005 * 120.43014 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.03740 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.06282 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 8 5.4504 -2.6367 0.0001 12 6 6.0673 -3.8477 0.0008 13 6 5.3116 -5.0120 0.0071 14 6 5.9374 -6.2440 0.0019 15 6 7.3168 -6.3212 0.0020 16 6 8.0782 -5.1592 0.0015 17 7 9.4742 -5.2371 0.0021 18 6 10.2011 -4.3008 0.6437 19 8 9.6439 -3.4443 1.3010 20 6 11.6818 -4.3162 0.5472 21 6 12.4457 -3.3520 1.2064 22 6 13.8265 -3.4114 1.0842 23 7 14.3676 -4.3709 0.3531 24 6 13.6162 -5.2668 -0.2570 25 7 12.3038 -5.2529 -0.1650 26 6 7.4512 -3.9207 0.0003 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6798 0.8894 29 1 3.8745 -0.6808 -0.8905 30 1 3.6578 -3.1507 -0.8896 31 1 3.6584 -3.1503 0.8903 32 1 4.2332 -4.9550 0.0119 33 1 5.3470 -7.1483 0.0027 34 1 7.8034 -7.2853 0.0029 35 1 9.9196 -5.9650 -0.4591 36 1 11.9744 -2.5798 1.7963 37 1 14.4514 -2.6831 1.5798 38 1 14.0924 -6.0369 -0.8457 39 1 8.0407 -3.0158 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488678142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:36 Heat of formation + Delta-G solvation = -14.947799 kcal Electronic energy + Delta-G solvation = -23803.005970 eV Core-core repulsion = 20096.520678 eV Total energy + Delta-G solvation = -3706.485292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46050 -41.49942 -40.50721 -38.54863 -35.98764 -35.38948 -34.87460 -33.23841 -32.95341 -31.23073 -30.38081 -27.25911 -26.77485 -25.47377 -24.25937 -23.43668 -22.66734 -21.66370 -20.06188 -19.51782 -18.86307 -18.47177 -17.28364 -17.07292 -17.02692 -16.89342 -16.70581 -16.52659 -16.43341 -16.08980 -15.48657 -15.28162 -14.83261 -14.67942 -14.52396 -14.44565 -14.35860 -13.46622 -13.39792 -12.78827 -12.69683 -12.49345 -12.15245 -12.11288 -11.99567 -11.88721 -11.80317 -11.60781 -11.41753 -11.26242 -10.89962 -10.83039 -10.50685 -9.50887 -9.09053 -8.36463 -6.42753 -0.78578 -0.15770 0.21529 0.43429 1.33801 1.35563 1.48261 1.48498 1.57755 2.27893 2.31515 2.66390 2.71122 2.79178 2.98299 3.13968 3.40535 3.65952 3.86097 3.97038 4.11780 4.14842 4.20048 4.21216 4.36350 4.45650 4.51145 4.56721 4.62806 4.67381 5.07870 5.16586 5.18917 5.19510 5.27444 5.34345 5.44916 5.50723 5.62492 5.81284 6.14266 6.15286 6.47818 6.62447 6.74790 6.85755 7.22278 8.79015 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.002457 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.187276 B =11391.357924 C =12668.175971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.046 0.954 9 C -0.008 4.008 10 C 0.086 3.914 11 O -0.339 6.339 12 C 0.128 3.872 13 C -0.230 4.230 14 C -0.052 4.052 15 C -0.170 4.170 16 C 0.172 3.828 17 N -0.636 5.636 18 C 0.565 3.435 19 O -0.533 6.533 20 C 0.115 3.885 21 C -0.170 4.170 22 C 0.163 3.837 23 N -0.516 5.516 24 C 0.294 3.706 25 N -0.504 5.504 26 C -0.181 4.181 27 H 0.270 0.730 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.436 0.564 36 H 0.166 0.834 37 H 0.214 0.786 38 H 0.237 0.763 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.487 -15.221 -0.169 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.064 0.936 9 C -0.045 4.045 10 C 0.012 3.988 11 O -0.253 6.253 12 C 0.082 3.918 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.190 4.190 16 C 0.078 3.922 17 N -0.283 5.283 18 C 0.351 3.649 19 O -0.407 6.407 20 C -0.032 4.032 21 C -0.193 4.193 22 C -0.004 4.004 23 N -0.230 5.230 24 C 0.007 3.993 25 N -0.221 5.221 26 C -0.202 4.202 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.183 0.817 34 H 0.184 0.816 35 H 0.277 0.723 36 H 0.184 0.816 37 H 0.231 0.769 38 H 0.253 0.747 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 30.455 -15.018 -0.253 33.958 hybrid contribution -0.769 1.271 0.286 1.512 sum 29.687 -13.747 0.033 32.715 Atomic orbital electron populations 1.70016 1.07944 1.28479 1.51512 1.25842 0.95634 1.03161 0.93725 0.85714 0.79340 0.78596 0.79408 1.18909 1.20276 1.17872 1.21085 0.90284 0.94006 1.51882 0.93617 1.19457 0.94588 0.92834 0.97645 1.22721 0.75491 0.99557 1.01036 1.86045 1.23158 1.27890 1.88185 1.19129 0.92145 0.85068 0.95460 1.21571 1.00928 0.92679 1.09793 1.21139 0.94178 0.97227 0.94442 1.21122 0.93718 0.97344 1.06800 1.17403 0.82519 0.93163 0.99106 1.43123 1.03881 1.28993 1.52261 1.18315 0.86315 0.81373 0.78868 1.90883 1.71906 1.37552 1.40390 1.21239 0.93195 0.93484 0.95247 1.23211 0.96592 0.99894 0.99616 1.23981 0.91871 0.94024 0.90566 1.68500 1.42125 1.04212 1.08205 1.25718 0.84841 0.95554 0.93216 1.68323 1.13769 1.23180 1.16801 1.20202 0.91679 0.98282 1.09988 0.92066 0.95760 0.95655 0.91809 0.92146 0.84972 0.81668 0.81627 0.72347 0.81632 0.76941 0.74741 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 2 C 0.01 0.87 5.47 84.66 0.46 1.33 16 3 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 7 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.81 16 9 C -0.01 -0.39 4.41 29.85 0.13 -0.25 16 10 C 0.09 3.69 4.68 71.98 0.34 4.03 16 11 O -0.34 -14.21 10.13 -92.50 -0.94 -15.15 16 12 C 0.13 4.58 6.68 22.49 0.15 4.73 16 13 C -0.23 -6.81 9.04 22.39 0.20 -6.61 16 14 C -0.05 -1.10 10.03 22.24 0.22 -0.88 16 15 C -0.17 -3.32 9.96 22.41 0.22 -3.10 16 16 C 0.17 4.33 6.27 38.17 0.24 4.57 16 17 N -0.64 -12.86 5.33 -305.67 -1.63 -14.49 16 18 C 0.57 13.24 7.56 86.95 0.66 13.90 16 19 O -0.53 -16.61 14.11 -3.70 -0.05 -16.66 16 20 C 0.12 2.04 6.79 41.98 0.29 2.33 16 21 C -0.17 -2.37 9.72 22.71 0.22 -2.15 16 22 C 0.16 1.57 11.31 84.76 0.96 2.52 16 23 N -0.52 -6.08 10.42 -200.10 -2.09 -8.17 16 24 C 0.29 3.10 12.28 180.92 2.22 5.32 16 25 N -0.50 -7.19 9.71 -189.17 -1.84 -9.02 16 26 C -0.18 -5.98 8.59 22.49 0.19 -5.79 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 28 H 0.02 1.22 7.20 -2.39 -0.02 1.20 16 29 H 0.03 1.24 7.57 -2.38 -0.02 1.22 16 30 H 0.06 2.60 7.67 -2.39 -0.02 2.58 16 31 H 0.06 2.50 7.65 -2.38 -0.02 2.48 16 32 H 0.13 3.88 6.29 -2.91 -0.02 3.87 16 33 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.44 6.05 8.21 -92.71 -0.76 5.29 16 36 H 0.17 2.19 7.74 -2.91 -0.02 2.17 16 37 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.24 0.66 8.06 -2.91 -0.02 0.64 16 39 H 0.12 4.32 6.42 -2.91 -0.02 4.31 16 Total: -1.00 -76.74 341.61 2.68 -74.06 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.28 Total: 11.41 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 6.75 Total: -10.88 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -5.25 Total: -89.81 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.99 Total: -31.81 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -76.74 2.68 -74.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488678142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.111 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds