Wall clock time and date at job start Tue Mar 31 2020 10:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86803 * 120.00431 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00219 * 3 2 1 5 5 H 1.48504 * 109.46853 * 30.00415 * 3 2 1 6 6 H 1.48503 * 109.47218 * 150.00030 * 3 2 1 7 7 C 1.40033 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99935 * 192.78869 * 7 2 1 9 9 C 1.41542 * 120.00262 * 12.78027 * 7 2 1 10 10 C 1.41173 * 120.99903 * 201.16749 * 9 7 2 11 11 C 1.37591 * 119.01364 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.10955 * 359.73957 * 11 10 9 13 13 C 1.32463 * 122.22952 * 0.52801 * 12 11 10 14 14 N 1.39475 * 119.57925 * 179.74873 * 13 12 11 15 15 C 1.34778 * 119.99609 * 6.11471 * 14 13 12 16 16 O 1.21276 * 120.00101 * 355.30055 * 15 14 13 17 17 C 1.50703 * 119.99941 * 175.02953 * 15 14 13 18 18 C 1.52998 * 109.47028 * 180.27325 * 17 15 14 19 19 C 1.50703 * 109.46945 * 179.97438 * 18 17 15 20 20 C 1.38831 * 120.35362 * 89.99985 * 19 18 17 21 21 C 1.38376 * 118.48816 * 179.97438 * 20 19 18 22 22 C 1.38921 * 119.11200 * 0.02562 * 21 20 19 23 23 O 1.35668 * 119.68694 * 179.97438 * 22 21 20 24 24 N 1.32252 * 120.62662 * 0.02562 * 22 21 20 25 25 C 1.31963 * 121.64986 * 359.68218 * 24 22 21 26 26 C 1.38590 * 120.84458 * 359.47430 * 13 12 11 27 27 H 0.97009 * 119.99641 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.48985 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.44128 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00528 * 186.11066 * 14 13 12 31 31 H 1.09003 * 109.47065 * 300.27109 * 17 15 14 32 32 H 1.09002 * 109.47341 * 60.27048 * 17 15 14 33 33 H 1.08993 * 109.47543 * 299.99840 * 18 17 15 34 34 H 1.08997 * 109.47549 * 60.00359 * 18 17 15 35 35 H 1.08001 * 120.75823 * 0.02562 * 20 19 18 36 36 H 1.08005 * 120.44806 * 179.97438 * 21 20 19 37 37 H 0.96703 * 113.99833 * 89.99900 * 23 22 21 38 38 H 1.07998 * 119.58650 * 180.30591 * 25 24 22 39 39 H 1.07999 * 120.60385 * 180.26904 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0674 -1.2245 0.2065 9 6 1.3261 -2.4232 -0.2722 10 6 1.8575 -3.6648 0.1389 11 6 1.1610 -4.8164 -0.1472 12 7 0.0089 -4.7749 -0.7917 13 6 -0.5298 -3.6368 -1.2031 14 7 -1.7470 -3.6576 -1.8837 15 6 -2.4280 -4.8137 -2.0113 16 8 -1.9433 -5.8504 -1.6098 17 6 -3.7942 -4.8173 -2.6474 18 6 -4.3459 -6.2442 -2.6627 19 6 -5.7123 -6.2477 -3.2982 20 6 -5.8487 -6.4310 -4.6676 21 6 -7.1216 -6.4278 -5.2104 22 6 -8.2135 -6.2419 -4.3718 23 8 -9.4666 -6.2362 -4.8917 24 7 -8.0429 -6.0694 -3.0718 25 6 -6.8422 -6.0732 -2.5244 26 6 0.0979 -2.4252 -0.9610 27 1 -0.4850 0.8402 0.0004 28 1 2.7971 -3.7101 0.6693 29 1 1.5614 -5.7701 0.1637 30 1 -2.1036 -2.8402 -2.2651 31 1 -4.4633 -4.1752 -2.0746 32 1 -3.7202 -4.4453 -3.6693 33 1 -3.6769 -6.8864 -3.2354 34 1 -4.4200 -6.6162 -1.6408 35 1 -4.9812 -6.5736 -5.2949 36 1 -7.2643 -6.5672 -6.2719 37 1 -9.8846 -7.1078 -4.9200 38 1 -6.7417 -5.9341 -1.4581 39 1 -0.3469 -1.4992 -1.2945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514904705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:55 Heat of formation + Delta-G solvation = -10.224471 kcal Electronic energy + Delta-G solvation = -23833.102868 eV Core-core repulsion = 20126.822395 eV Total energy + Delta-G solvation = -3706.280473 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76950 -39.60973 -37.96076 -37.44888 -34.51724 -34.08160 -33.74741 -32.35192 -30.57777 -29.80910 -28.34331 -26.04877 -25.00398 -23.99648 -22.30512 -21.93035 -21.06211 -19.59849 -19.11903 -17.69524 -17.21007 -17.04276 -16.31946 -15.86859 -15.30574 -15.27263 -15.10856 -14.54705 -14.20553 -13.93965 -13.81732 -13.49300 -13.44252 -13.24589 -12.83467 -12.63768 -12.30766 -12.14206 -12.05245 -11.79184 -11.45451 -11.22339 -11.10647 -10.92845 -10.31006 -10.14884 -10.14007 -9.78731 -9.68470 -9.45164 -9.39924 -9.00019 -8.03328 -7.76103 -7.04169 -6.79612 -4.66391 0.68590 0.93595 2.53043 2.76181 2.98900 3.02273 3.17795 3.18167 3.43339 3.48524 3.68183 3.81203 4.37741 4.53252 4.64235 4.66477 4.70227 4.91152 5.02355 5.13870 5.28347 5.37310 5.54298 5.66075 5.68866 5.72501 5.99665 6.01952 6.10278 6.26290 6.56344 6.64166 6.78745 6.91789 7.12371 7.15834 7.37753 7.44796 7.63752 7.75523 7.93085 8.19077 8.40738 8.67448 8.72400 8.87223 9.67443 10.02659 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.002361 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.251082 B =11858.319374 C =12798.843685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.138 3.862 10 C -0.285 4.285 11 C 0.117 3.883 12 N -0.555 5.555 13 C 0.334 3.666 14 N -0.659 5.659 15 C 0.497 3.503 16 O -0.483 6.483 17 C -0.136 4.136 18 C -0.060 4.060 19 C -0.137 4.137 20 C -0.057 4.057 21 C -0.183 4.183 22 C 0.299 3.701 23 O -0.484 6.484 24 N -0.502 5.502 25 C 0.127 3.873 26 C -0.246 4.246 27 H 0.281 0.719 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.399 0.601 38 H 0.162 0.838 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 -7.026 -9.210 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.129 3.871 10 C -0.309 4.309 11 C -0.037 4.037 12 N -0.274 5.274 13 C 0.109 3.891 14 N -0.305 5.305 15 C 0.282 3.718 16 O -0.354 6.354 17 C -0.176 4.176 18 C -0.098 4.098 19 C -0.139 4.139 20 C -0.083 4.083 21 C -0.204 4.204 22 C 0.120 3.880 23 O -0.291 6.291 24 N -0.220 5.220 25 C -0.030 4.030 26 C -0.272 4.272 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.242 0.758 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.256 0.744 38 H 0.179 0.821 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.718 -7.735 -8.681 17.983 hybrid contribution 1.110 1.559 -0.483 1.974 sum -12.608 -6.176 -9.164 16.766 Atomic orbital electron populations 1.69737 1.07643 1.29210 1.34989 1.25990 0.94863 1.01601 0.91948 0.86193 0.80419 0.80058 0.79388 1.19189 1.20164 1.18487 1.19625 0.96611 0.90265 1.41553 0.90017 1.17602 0.90516 0.92291 0.86657 1.21881 1.03695 0.93936 1.11361 1.21750 0.90368 0.96676 0.94915 1.67205 1.13625 1.27254 1.19329 1.18240 0.86070 0.90834 0.93944 1.43472 1.20511 1.11304 1.55182 1.20606 0.86761 0.84125 0.80357 1.90781 1.68524 1.30716 1.45366 1.21682 0.94804 0.98586 1.02540 1.20257 0.90846 0.96289 1.02416 1.21024 0.97344 1.01052 0.94453 1.21500 0.97253 0.94984 0.94579 1.22109 0.92724 1.03939 1.01643 1.19202 0.85229 0.96018 0.87562 1.84787 1.27026 1.35699 1.81620 1.67180 1.27457 1.14060 1.13297 1.22520 0.85691 0.94396 1.00366 1.21813 1.00769 0.95811 1.08799 0.90742 0.88046 0.85936 0.75762 0.88881 0.89145 0.89646 0.89460 0.84114 0.84249 0.74423 0.82068 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.08 10.53 55.55 0.59 -18.49 16 2 C 0.07 1.77 5.30 -17.34 -0.09 1.68 16 3 Si 0.92 17.68 29.58 -169.99 -5.03 12.65 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 7 C -0.45 -11.41 9.15 -37.65 -0.34 -11.75 16 8 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 9 C 0.14 3.59 5.65 -106.55 -0.60 2.99 16 10 C -0.28 -6.93 9.90 -38.70 -0.38 -7.32 16 11 C 0.12 2.79 11.15 -17.68 -0.20 2.59 16 12 N -0.55 -13.96 7.86 -12.52 -0.10 -14.05 16 13 C 0.33 7.95 7.41 -154.71 -1.15 6.80 16 14 N -0.66 -12.37 5.39 -11.49 -0.06 -12.44 16 15 C 0.50 8.64 7.79 -10.98 -0.09 8.55 16 16 O -0.48 -10.40 14.24 5.56 0.08 -10.32 16 17 C -0.14 -1.55 5.68 -27.88 -0.16 -1.70 16 18 C -0.06 -0.63 4.66 -27.88 -0.13 -0.76 16 19 C -0.14 -1.30 5.15 -104.47 -0.54 -1.84 16 20 C -0.06 -0.49 9.85 -39.31 -0.39 -0.87 16 21 C -0.18 -1.55 10.04 -39.28 -0.39 -1.95 16 22 C 0.30 3.09 7.74 -17.12 -0.13 2.96 16 23 O -0.48 -4.32 13.56 -18.71 -0.25 -4.57 16 24 N -0.50 -5.92 10.39 -13.33 -0.14 -6.06 16 25 C 0.13 1.31 10.85 -17.57 -0.19 1.12 16 26 C -0.25 -6.17 8.66 -38.48 -0.33 -6.50 16 27 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.12 2.55 8.06 -52.48 -0.42 2.12 16 30 H 0.41 6.24 8.70 -40.82 -0.36 5.88 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 34 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.40 1.49 9.06 45.56 0.41 1.90 16 38 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.14 3.43 5.83 -52.49 -0.31 3.12 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -33.64 344.29 -8.43 -42.08 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.59 Total: 12.04 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -5.12 Total: -6.02 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.29 Total: -51.04 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.17 Total: -14.89 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.64 -8.43 -42.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514904705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.854 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds