Wall clock time and date at job start Tue Mar 31 2020 10:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86803 * 120.00431 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00219 * 3 2 1 5 5 H 1.48504 * 109.46853 * 30.00415 * 3 2 1 6 6 H 1.48503 * 109.47218 * 150.00030 * 3 2 1 7 7 C 1.40033 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99935 * 192.78869 * 7 2 1 9 9 C 1.41542 * 120.00262 * 12.78027 * 7 2 1 10 10 C 1.41173 * 120.99903 * 201.16749 * 9 7 2 11 11 C 1.37591 * 119.01364 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.10955 * 359.73957 * 11 10 9 13 13 C 1.32463 * 122.22952 * 0.52801 * 12 11 10 14 14 N 1.39475 * 119.57925 * 179.74873 * 13 12 11 15 15 C 1.34778 * 119.99609 * 6.11471 * 14 13 12 16 16 O 1.21276 * 120.00101 * 355.30055 * 15 14 13 17 17 C 1.50703 * 119.99941 * 175.02953 * 15 14 13 18 18 C 1.52998 * 109.47028 * 180.27325 * 17 15 14 19 19 C 1.50703 * 109.46945 * 179.97438 * 18 17 15 20 20 C 1.38831 * 120.35362 * 89.99985 * 19 18 17 21 21 C 1.38376 * 118.48816 * 179.97438 * 20 19 18 22 22 C 1.38921 * 119.11200 * 0.02562 * 21 20 19 23 23 O 1.35668 * 119.68694 * 179.97438 * 22 21 20 24 24 N 1.32252 * 120.62662 * 0.02562 * 22 21 20 25 25 C 1.31963 * 121.64986 * 359.68218 * 24 22 21 26 26 C 1.38590 * 120.84458 * 359.47430 * 13 12 11 27 27 H 0.97009 * 119.99641 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.48985 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.44128 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00528 * 186.11066 * 14 13 12 31 31 H 1.09003 * 109.47065 * 300.27109 * 17 15 14 32 32 H 1.09002 * 109.47341 * 60.27048 * 17 15 14 33 33 H 1.08993 * 109.47543 * 299.99840 * 18 17 15 34 34 H 1.08997 * 109.47549 * 60.00359 * 18 17 15 35 35 H 1.08001 * 120.75823 * 0.02562 * 20 19 18 36 36 H 1.08005 * 120.44806 * 179.97438 * 21 20 19 37 37 H 0.96703 * 113.99833 * 89.99900 * 23 22 21 38 38 H 1.07998 * 119.58650 * 180.30591 * 25 24 22 39 39 H 1.07999 * 120.60385 * 180.26904 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0674 -1.2245 0.2065 9 6 1.3261 -2.4232 -0.2722 10 6 1.8575 -3.6648 0.1389 11 6 1.1610 -4.8164 -0.1472 12 7 0.0089 -4.7749 -0.7917 13 6 -0.5298 -3.6368 -1.2031 14 7 -1.7470 -3.6576 -1.8837 15 6 -2.4280 -4.8137 -2.0113 16 8 -1.9433 -5.8504 -1.6098 17 6 -3.7942 -4.8173 -2.6474 18 6 -4.3459 -6.2442 -2.6627 19 6 -5.7123 -6.2477 -3.2982 20 6 -5.8487 -6.4310 -4.6676 21 6 -7.1216 -6.4278 -5.2104 22 6 -8.2135 -6.2419 -4.3718 23 8 -9.4666 -6.2362 -4.8917 24 7 -8.0429 -6.0694 -3.0718 25 6 -6.8422 -6.0732 -2.5244 26 6 0.0979 -2.4252 -0.9610 27 1 -0.4850 0.8402 0.0004 28 1 2.7971 -3.7101 0.6693 29 1 1.5614 -5.7701 0.1637 30 1 -2.1036 -2.8402 -2.2651 31 1 -4.4633 -4.1752 -2.0746 32 1 -3.7202 -4.4453 -3.6693 33 1 -3.6769 -6.8864 -3.2354 34 1 -4.4200 -6.6162 -1.6408 35 1 -4.9812 -6.5736 -5.2949 36 1 -7.2643 -6.5672 -6.2719 37 1 -9.8846 -7.1078 -4.9200 38 1 -6.7417 -5.9341 -1.4581 39 1 -0.3469 -1.4992 -1.2945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514904705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:55 Heat of formation + Delta-G solvation = -34.632626 kcal Electronic energy + Delta-G solvation = -23834.161285 eV Core-core repulsion = 20126.822395 eV Total energy + Delta-G solvation = -3707.338890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53289 -41.11910 -39.57351 -38.21461 -36.16940 -35.45629 -35.05433 -33.08490 -32.42761 -31.01145 -29.75854 -27.92413 -25.99880 -24.68612 -23.82895 -23.42944 -22.33257 -21.09656 -19.77448 -19.44963 -18.45632 -17.94204 -17.53104 -16.99024 -16.94102 -16.48807 -16.12984 -16.00406 -15.59859 -15.33593 -15.06841 -14.73762 -14.45966 -14.33105 -14.23214 -14.08998 -13.78560 -13.14554 -13.02797 -12.89368 -12.86038 -12.69844 -12.55781 -12.04636 -11.98381 -11.88848 -11.48273 -11.17058 -10.97889 -10.81554 -10.39816 -9.94080 -9.76582 -9.56405 -8.83108 -8.59203 -6.57910 -0.01241 0.25870 0.77047 1.00974 1.41367 1.54208 1.56454 1.93171 2.19204 2.21469 2.55713 2.82103 2.85077 3.55057 3.75386 3.77683 3.92648 3.97730 4.02657 4.11886 4.28399 4.36422 4.51601 4.65387 4.75440 4.79603 4.88665 4.94175 4.95065 5.03641 5.11274 5.20213 5.26851 5.35158 5.50787 5.60833 5.68109 5.94087 6.16861 6.49640 6.63912 6.65400 6.80787 6.84262 6.94905 7.36923 7.86876 8.25943 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.002361 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.251082 B =11858.319374 C =12798.843685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.479 4.479 8 H 0.083 0.917 9 C 0.107 3.893 10 C -0.300 4.300 11 C 0.111 3.889 12 N -0.578 5.578 13 C 0.331 3.669 14 N -0.655 5.655 15 C 0.494 3.506 16 O -0.527 6.527 17 C -0.120 4.120 18 C -0.051 4.051 19 C -0.137 4.137 20 C -0.054 4.054 21 C -0.179 4.179 22 C 0.287 3.713 23 O -0.496 6.496 24 N -0.534 5.534 25 C 0.117 3.883 26 C -0.267 4.267 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.423 0.577 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.418 0.582 38 H 0.169 0.831 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 -6.204 -10.529 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.181 4.181 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.324 4.324 11 C -0.042 4.042 12 N -0.298 5.298 13 C 0.105 3.895 14 N -0.302 5.302 15 C 0.282 3.718 16 O -0.400 6.400 17 C -0.160 4.160 18 C -0.089 4.089 19 C -0.139 4.139 20 C -0.079 4.079 21 C -0.200 4.200 22 C 0.109 3.891 23 O -0.306 6.306 24 N -0.253 5.253 25 C -0.039 4.039 26 C -0.292 4.292 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.166 0.834 30 H 0.260 0.740 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.181 0.819 36 H 0.182 0.818 37 H 0.279 0.721 38 H 0.186 0.814 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.423 -6.928 -10.020 18.879 hybrid contribution 1.228 1.244 -0.087 1.750 sum -13.195 -5.684 -10.107 17.567 Atomic orbital electron populations 1.69767 1.08917 1.30796 1.34219 1.26847 0.95692 1.04626 0.90888 0.85075 0.78913 0.75350 0.79635 1.18449 1.19132 1.18342 1.19903 0.96927 0.91236 1.42882 0.89935 1.18056 0.91439 0.93330 0.87299 1.22058 1.04467 0.93820 1.12072 1.22205 0.90105 0.97692 0.94237 1.67347 1.14305 1.27835 1.20296 1.18518 0.87360 0.90187 0.93389 1.43571 1.19106 1.12887 1.54641 1.21662 0.88208 0.82753 0.79205 1.90757 1.69956 1.32120 1.47180 1.21676 0.90793 0.99785 1.03701 1.20120 0.91358 0.95546 1.01920 1.20853 0.96225 1.01865 0.94964 1.21791 0.98120 0.93750 0.94271 1.22334 0.92045 1.02945 1.02641 1.19501 0.86149 0.95991 0.87509 1.84733 1.26854 1.37630 1.81386 1.67168 1.28230 1.15457 1.14444 1.22688 0.85687 0.94582 1.00966 1.21818 1.01218 0.96196 1.09979 0.89686 0.86808 0.83372 0.73970 0.86958 0.86224 0.90020 0.90600 0.81852 0.81830 0.72116 0.81382 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.07 10.53 21.84 0.23 -38.84 16 2 C 0.04 1.71 5.30 85.29 0.45 2.16 16 3 Si 0.99 35.48 29.58 68.60 2.03 37.51 16 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.27 -9.08 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.48 -24.65 9.15 23.52 0.22 -24.43 16 8 H 0.08 4.07 7.88 -2.91 -0.02 4.05 16 9 C 0.11 5.70 5.65 -21.11 -0.12 5.58 16 10 C -0.30 -14.91 9.90 22.84 0.23 -14.68 16 11 C 0.11 5.36 11.15 84.50 0.94 6.30 16 12 N -0.58 -29.41 7.86 -193.54 -1.52 -30.93 16 13 C 0.33 15.97 7.41 132.75 0.98 16.96 16 14 N -0.65 -24.31 5.39 -308.66 -1.66 -25.97 16 15 C 0.49 16.76 7.79 87.66 0.68 17.44 16 16 O -0.53 -22.70 14.24 -3.02 -0.04 -22.74 16 17 C -0.12 -2.46 5.68 29.85 0.17 -2.29 16 18 C -0.05 -1.00 4.66 29.85 0.14 -0.86 16 19 C -0.14 -2.35 5.15 -19.77 -0.10 -2.45 16 20 C -0.05 -0.76 9.85 22.44 0.22 -0.54 16 21 C -0.18 -2.57 10.04 22.47 0.23 -2.34 16 22 C 0.29 5.48 7.74 84.79 0.66 6.14 16 23 O -0.50 -8.10 13.56 -89.85 -1.22 -9.32 16 24 N -0.53 -12.10 10.39 -308.96 -3.21 -15.31 16 25 C 0.12 2.28 10.85 84.63 0.92 3.20 16 26 C -0.27 -13.62 8.66 22.98 0.20 -13.42 16 27 H 0.29 12.52 8.29 -92.70 -0.77 11.75 16 28 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 29 H 0.15 6.13 8.06 -2.91 -0.02 6.11 16 30 H 0.42 12.56 8.70 -92.71 -0.81 11.76 16 31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 34 H 0.08 1.66 8.05 -2.39 -0.02 1.65 16 35 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.42 2.52 9.06 -74.05 -0.67 1.84 16 38 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.14 6.83 5.83 -2.91 -0.02 6.81 16 Total: -1.00 -73.75 344.29 0.06 -73.69 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.36 Total: 35.15 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.81 Total: -3.23 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -6.16 Total: -111.06 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.26 Total: -32.07 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -73.75 0.06 -73.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514904705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.060 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds