Wall clock time and date at job start Tue Mar 31 2020 10:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48491 * 109.47393 * 275.20478 * 3 2 1 5 5 H 1.48502 * 109.47287 * 35.20630 * 3 2 1 6 6 H 1.48504 * 109.46767 * 155.20179 * 3 2 1 7 7 C 1.40029 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 343.03238 * 7 2 1 9 9 C 1.41550 * 119.99998 * 163.02668 * 7 2 1 10 10 C 1.41170 * 120.99683 * 154.01089 * 9 7 2 11 11 C 1.37586 * 119.01672 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10984 * 0.02844 * 11 10 9 13 13 C 1.32472 * 122.22734 * 359.65294 * 12 11 10 14 14 N 1.39475 * 119.57569 * 180.34250 * 13 12 11 15 15 C 1.34776 * 120.00058 * 3.23706 * 14 13 12 16 16 O 1.21276 * 120.00024 * 4.86133 * 15 14 13 17 17 C 1.50700 * 119.99659 * 184.87146 * 15 14 13 18 18 O 1.42896 * 109.46806 * 179.97438 * 17 15 14 19 19 C 1.42910 * 113.99958 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.47086 * 179.97438 * 19 18 17 21 21 C 1.38668 * 120.41513 * 269.71648 * 20 19 18 22 22 C 1.38635 * 118.41572 * 179.78031 * 21 20 19 23 23 C 1.38220 * 119.16157 * 0.52392 * 22 21 20 24 24 N 1.31856 * 120.76696 * 359.71247 * 23 22 21 25 25 C 1.31893 * 121.72204 * 0.02562 * 24 23 22 26 26 C 1.38589 * 120.84246 * 0.63717 * 13 12 11 27 27 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.48938 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.44565 * 180.02562 * 11 10 9 30 30 H 0.96997 * 119.99631 * 183.23430 * 14 13 12 31 31 H 1.08999 * 109.46684 * 299.99462 * 17 15 14 32 32 H 1.08998 * 109.47512 * 59.99493 * 17 15 14 33 33 H 1.08998 * 109.46628 * 299.99385 * 19 18 17 34 34 H 1.08994 * 109.46685 * 59.99265 * 19 18 17 35 35 H 1.07999 * 120.79241 * 0.02963 * 21 20 19 36 36 H 1.07998 * 120.41440 * 180.21869 * 22 21 20 37 37 H 1.08001 * 119.62201 * 179.75056 * 23 22 21 38 38 H 1.08000 * 119.61749 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.60528 * 179.68604 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3788 2.1100 -1.3942 5 1 1.4981 2.6185 0.8072 6 1 3.5895 1.4110 0.5873 7 6 2.0076 -1.2126 0.0005 8 1 1.5029 -2.1275 0.2739 9 6 3.3768 -1.2394 -0.3573 10 6 4.2347 -2.2514 0.1253 11 6 5.5589 -2.2379 -0.2481 12 7 6.0336 -1.2977 -1.0451 13 6 5.2695 -0.3302 -1.5297 14 7 5.8273 0.6306 -2.3729 15 6 7.1199 0.5343 -2.7422 16 8 7.7738 -0.4330 -2.4142 17 6 7.7527 1.6288 -3.5624 18 8 9.1183 1.2990 -3.8241 19 6 9.8140 2.2767 -4.6002 20 6 11.2370 1.8289 -4.8137 21 6 12.2286 2.1882 -3.9133 22 6 13.5227 1.7496 -4.1476 23 6 13.7818 0.9836 -5.2685 24 7 12.8145 0.6651 -6.1061 25 6 11.5712 1.0602 -5.9122 26 6 3.9242 -0.2571 -1.2048 27 1 -0.4850 0.8400 -0.0004 28 1 3.8572 -3.0247 0.7779 29 1 6.2213 -3.0090 0.1167 30 1 5.2850 1.3681 -2.6935 31 1 7.2164 1.7321 -4.5057 32 1 7.7052 2.5687 -3.0126 33 1 9.3206 2.3927 -5.5652 34 1 9.8087 3.2303 -4.0724 35 1 11.9975 2.7918 -3.0481 36 1 14.3193 2.0075 -3.4654 37 1 14.7880 0.6414 -5.4604 38 1 10.8055 0.7799 -6.6204 39 1 3.3059 0.5362 -1.5980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516674159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:06 Heat of formation + Delta-G solvation = 2.082294 kcal Electronic energy + Delta-G solvation = -23963.478438 eV Core-core repulsion = 20257.731627 eV Total energy + Delta-G solvation = -3705.746811 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48693 -39.88516 -38.42332 -37.35931 -34.44665 -33.84920 -33.23032 -32.05923 -31.36437 -29.68383 -27.85537 -26.23545 -25.93169 -23.87463 -22.44409 -22.32642 -21.79250 -19.89474 -17.85230 -17.64763 -17.28342 -16.97031 -16.88595 -16.02118 -15.91941 -15.51990 -15.43747 -14.65159 -14.36526 -14.25896 -14.09916 -13.96934 -13.51236 -13.35814 -13.06507 -12.99479 -12.92110 -12.42415 -12.15677 -11.68884 -11.66637 -11.01124 -10.87893 -10.75258 -10.14991 -10.06679 -10.01904 -9.91659 -9.72534 -9.58337 -9.42943 -9.33402 -8.29143 -7.91191 -7.30215 -7.13166 -4.78745 0.71737 0.97757 2.24110 2.58449 2.85313 2.92510 3.02226 3.17131 3.26179 3.51118 3.82110 3.95399 4.19531 4.44285 4.50397 4.51612 4.64850 4.68377 4.77293 4.94562 4.99183 5.03570 5.09719 5.30707 5.38881 5.45550 5.71666 5.78352 5.92497 6.24220 6.30466 6.36022 6.36773 6.52973 6.76191 6.89671 7.08273 7.20632 7.52752 7.66305 7.67756 7.97199 8.15179 8.37666 8.59500 8.62159 9.41783 9.87790 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028155 B = 0.002475 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.247137 B =11312.248423 C =11886.593746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.433 4.433 8 H 0.096 0.904 9 C 0.126 3.874 10 C -0.273 4.273 11 C 0.130 3.870 12 N -0.559 5.559 13 C 0.372 3.628 14 N -0.663 5.663 15 C 0.498 3.502 16 O -0.452 6.452 17 C 0.045 3.955 18 O -0.355 6.355 19 C 0.105 3.895 20 C -0.140 4.140 21 C -0.053 4.053 22 C -0.176 4.176 23 C 0.102 3.898 24 N -0.488 5.488 25 C 0.122 3.878 26 C -0.322 4.322 27 H 0.288 0.712 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.408 0.592 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.025 10.743 -8.821 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.463 4.463 8 H 0.114 0.886 9 C 0.118 3.882 10 C -0.296 4.296 11 C -0.022 4.022 12 N -0.278 5.278 13 C 0.145 3.855 14 N -0.311 5.311 15 C 0.281 3.719 16 O -0.319 6.319 17 C -0.036 4.036 18 O -0.273 6.273 19 C 0.028 3.972 20 C -0.142 4.142 21 C -0.079 4.079 22 C -0.196 4.196 23 C -0.055 4.055 24 N -0.196 5.196 25 C -0.035 4.035 26 C -0.348 4.348 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.242 0.758 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.514 9.420 -9.486 22.836 hybrid contribution -1.468 1.961 0.765 2.566 sum 17.045 11.381 -8.721 22.274 Atomic orbital electron populations 1.69637 1.08165 1.30652 1.33526 1.26241 0.94795 1.02050 0.90609 0.86208 0.81317 0.79321 0.78561 1.19751 1.21874 1.16663 1.19534 0.92236 0.96199 1.38320 0.88637 1.17675 0.93062 0.89694 0.87784 1.21877 0.94512 1.04649 1.08581 1.21893 0.93213 0.94437 0.92654 1.67304 1.37450 1.05646 1.17431 1.17933 0.88482 0.88859 0.90260 1.43389 1.11419 1.27700 1.48585 1.20215 0.82111 0.88025 0.81570 1.90828 1.60643 1.30366 1.50092 1.22254 0.84224 0.97272 0.99814 1.88114 1.21540 1.44699 1.72929 1.21262 0.88713 0.91459 0.95797 1.20570 0.95265 1.01239 0.97158 1.21552 0.92468 0.96500 0.97344 1.22163 0.97621 1.00327 0.99495 1.22843 0.98634 0.93741 0.90261 1.67750 1.00867 1.20708 1.30291 1.22726 0.93469 0.91819 0.95461 1.21131 0.93784 1.07728 1.12167 0.90105 0.87166 0.85224 0.75768 0.90176 0.90227 0.91704 0.91924 0.84608 0.84534 0.82636 0.82584 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.08 13.92 55.55 0.77 -19.31 16 2 C 0.08 2.09 5.45 -17.35 -0.09 2.00 16 3 Si 0.92 19.52 24.42 -169.99 -4.15 15.37 16 4 H -0.27 -5.34 6.70 56.52 0.38 -4.96 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.24 -5.42 6.66 56.52 0.38 -5.04 16 7 C -0.43 -11.24 9.66 -37.65 -0.36 -11.61 16 8 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.13 3.15 5.23 -106.55 -0.56 2.59 16 10 C -0.27 -6.35 9.90 -38.71 -0.38 -6.73 16 11 C 0.13 2.96 11.15 -17.68 -0.20 2.76 16 12 N -0.56 -13.65 7.87 -12.52 -0.10 -13.75 16 13 C 0.37 8.47 7.41 -154.70 -1.15 7.32 16 14 N -0.66 -11.90 5.39 -11.49 -0.06 -11.97 16 15 C 0.50 8.83 7.86 -10.99 -0.09 8.74 16 16 O -0.45 -10.36 14.77 -14.35 -0.21 -10.57 16 17 C 0.04 0.52 6.42 36.01 0.23 0.75 16 18 O -0.35 -4.77 9.86 -55.14 -0.54 -5.31 16 19 C 0.10 0.94 6.09 36.01 0.22 1.16 16 20 C -0.14 -1.41 5.53 -104.48 -0.58 -1.99 16 21 C -0.05 -0.47 9.86 -39.28 -0.39 -0.86 16 22 C -0.18 -1.43 10.11 -39.44 -0.40 -1.83 16 23 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 24 N -0.49 -5.56 10.36 -13.25 -0.14 -5.69 16 25 C 0.12 1.30 10.86 -17.55 -0.19 1.11 16 26 C -0.32 -7.57 7.01 -38.48 -0.27 -7.84 16 27 H 0.29 6.52 8.29 -40.82 -0.34 6.18 16 28 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 30 H 0.41 5.60 8.69 -40.82 -0.35 5.25 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.11 2.36 4.23 -52.49 -0.22 2.14 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -34.53 340.87 -8.10 -42.63 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.41 Total: 7.13 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -4.40 Total: -3.68 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.48 Total: -50.71 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.76 Total: -15.88 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.15 Total: 15.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.53 -8.10 -42.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516674159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.709 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds