Wall clock time and date at job start Tue Mar 31 2020 10:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48491 * 109.47393 * 275.20478 * 3 2 1 5 5 H 1.48502 * 109.47287 * 35.20630 * 3 2 1 6 6 H 1.48504 * 109.46767 * 155.20179 * 3 2 1 7 7 C 1.40029 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 343.03238 * 7 2 1 9 9 C 1.41550 * 119.99998 * 163.02668 * 7 2 1 10 10 C 1.41170 * 120.99683 * 154.01089 * 9 7 2 11 11 C 1.37586 * 119.01672 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10984 * 0.02844 * 11 10 9 13 13 C 1.32472 * 122.22734 * 359.65294 * 12 11 10 14 14 N 1.39475 * 119.57569 * 180.34250 * 13 12 11 15 15 C 1.34776 * 120.00058 * 3.23706 * 14 13 12 16 16 O 1.21276 * 120.00024 * 4.86133 * 15 14 13 17 17 C 1.50700 * 119.99659 * 184.87146 * 15 14 13 18 18 O 1.42896 * 109.46806 * 179.97438 * 17 15 14 19 19 C 1.42910 * 113.99958 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.47086 * 179.97438 * 19 18 17 21 21 C 1.38668 * 120.41513 * 269.71648 * 20 19 18 22 22 C 1.38635 * 118.41572 * 179.78031 * 21 20 19 23 23 C 1.38220 * 119.16157 * 0.52392 * 22 21 20 24 24 N 1.31856 * 120.76696 * 359.71247 * 23 22 21 25 25 C 1.31893 * 121.72204 * 0.02562 * 24 23 22 26 26 C 1.38589 * 120.84246 * 0.63717 * 13 12 11 27 27 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.48938 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.44565 * 180.02562 * 11 10 9 30 30 H 0.96997 * 119.99631 * 183.23430 * 14 13 12 31 31 H 1.08999 * 109.46684 * 299.99462 * 17 15 14 32 32 H 1.08998 * 109.47512 * 59.99493 * 17 15 14 33 33 H 1.08998 * 109.46628 * 299.99385 * 19 18 17 34 34 H 1.08994 * 109.46685 * 59.99265 * 19 18 17 35 35 H 1.07999 * 120.79241 * 0.02963 * 21 20 19 36 36 H 1.07998 * 120.41440 * 180.21869 * 22 21 20 37 37 H 1.08001 * 119.62201 * 179.75056 * 23 22 21 38 38 H 1.08000 * 119.61749 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.60528 * 179.68604 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3788 2.1100 -1.3942 5 1 1.4981 2.6185 0.8072 6 1 3.5895 1.4110 0.5873 7 6 2.0076 -1.2126 0.0005 8 1 1.5029 -2.1275 0.2739 9 6 3.3768 -1.2394 -0.3573 10 6 4.2347 -2.2514 0.1253 11 6 5.5589 -2.2379 -0.2481 12 7 6.0336 -1.2977 -1.0451 13 6 5.2695 -0.3302 -1.5297 14 7 5.8273 0.6306 -2.3729 15 6 7.1199 0.5343 -2.7422 16 8 7.7738 -0.4330 -2.4142 17 6 7.7527 1.6288 -3.5624 18 8 9.1183 1.2990 -3.8241 19 6 9.8140 2.2767 -4.6002 20 6 11.2370 1.8289 -4.8137 21 6 12.2286 2.1882 -3.9133 22 6 13.5227 1.7496 -4.1476 23 6 13.7818 0.9836 -5.2685 24 7 12.8145 0.6651 -6.1061 25 6 11.5712 1.0602 -5.9122 26 6 3.9242 -0.2571 -1.2048 27 1 -0.4850 0.8400 -0.0004 28 1 3.8572 -3.0247 0.7779 29 1 6.2213 -3.0090 0.1167 30 1 5.2850 1.3681 -2.6935 31 1 7.2164 1.7321 -4.5057 32 1 7.7052 2.5687 -3.0126 33 1 9.3206 2.3927 -5.5652 34 1 9.8087 3.2303 -4.0724 35 1 11.9975 2.7918 -3.0481 36 1 14.3193 2.0075 -3.4654 37 1 14.7880 0.6414 -5.4604 38 1 10.8055 0.7799 -6.6204 39 1 3.3059 0.5362 -1.5980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516674159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:05 Heat of formation + Delta-G solvation = -21.452491 kcal Electronic energy + Delta-G solvation = -23964.498983 eV Core-core repulsion = 20257.731627 eV Total energy + Delta-G solvation = -3706.767356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44291 -41.10867 -39.87391 -38.45686 -36.15274 -35.57603 -33.94065 -33.23835 -32.71354 -31.19228 -28.98142 -27.91871 -26.91134 -24.54321 -24.24067 -23.35268 -22.98368 -21.48401 -19.58578 -18.90356 -18.18372 -17.84969 -17.69823 -17.48973 -16.97458 -16.89293 -16.56266 -16.24329 -15.80773 -15.61254 -15.32254 -14.83248 -14.75889 -14.72336 -14.41819 -14.31792 -13.99217 -13.51856 -13.28600 -13.04551 -12.77079 -12.66678 -12.60793 -12.33145 -11.79109 -11.56802 -11.27822 -10.98984 -10.80560 -10.77081 -10.41141 -10.17229 -10.05405 -9.67878 -9.02412 -8.98486 -6.74303 0.04469 0.31257 0.52262 0.75597 1.23143 1.40011 1.49766 1.72155 1.77931 2.10050 2.65696 2.69755 3.14318 3.50066 3.52505 3.59959 3.87754 3.89981 4.05581 4.05830 4.07536 4.21949 4.31296 4.43451 4.47497 4.50507 4.57554 4.66802 4.71146 4.75760 4.83981 5.09845 5.15414 5.27836 5.28283 5.49527 5.66526 5.74037 5.94602 6.07714 6.20913 6.44819 6.52676 6.66341 6.98261 7.20848 7.68267 8.06945 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028155 B = 0.002475 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.247137 B =11312.248423 C =11886.593746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.049 3.951 3 Si 0.971 3.029 4 H -0.238 1.238 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.065 0.935 9 C 0.110 3.890 10 C -0.286 4.286 11 C 0.128 3.872 12 N -0.580 5.580 13 C 0.368 3.632 14 N -0.653 5.653 15 C 0.492 3.508 16 O -0.512 6.512 17 C 0.056 3.944 18 O -0.394 6.394 19 C 0.104 3.896 20 C -0.154 4.154 21 C -0.064 4.064 22 C -0.175 4.175 23 C 0.088 3.912 24 N -0.519 5.519 25 C 0.102 3.898 26 C -0.328 4.328 27 H 0.300 0.700 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.428 0.572 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.163 0.837 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.440 13.680 -9.694 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.169 4.169 3 Si 0.794 3.206 4 H -0.163 1.163 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.309 4.309 11 C -0.024 4.024 12 N -0.301 5.301 13 C 0.139 3.861 14 N -0.303 5.303 15 C 0.279 3.721 16 O -0.383 6.383 17 C -0.023 4.023 18 O -0.313 6.313 19 C 0.028 3.972 20 C -0.156 4.156 21 C -0.090 4.090 22 C -0.194 4.194 23 C -0.068 4.068 24 N -0.228 5.228 25 C -0.055 4.055 26 C -0.353 4.353 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.174 0.826 30 H 0.267 0.733 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.183 0.817 37 H 0.196 0.804 38 H 0.181 0.819 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.897 12.400 -10.399 25.647 hybrid contribution -1.804 0.963 1.034 2.291 sum 18.093 13.363 -9.365 24.365 Atomic orbital electron populations 1.69648 1.09262 1.32219 1.34208 1.26969 0.95468 1.04642 0.89836 0.85423 0.79078 0.75772 0.80349 1.16288 1.20436 1.18445 1.19516 0.93145 0.96044 1.40772 0.91677 1.17892 0.92872 0.90839 0.88197 1.22061 0.94848 1.04889 1.09108 1.22326 0.93355 0.94692 0.91982 1.67446 1.38272 1.06404 1.17942 1.18214 0.88417 0.89161 0.90277 1.43416 1.12217 1.27162 1.47460 1.21410 0.81326 0.88627 0.80737 1.90801 1.61825 1.33164 1.52531 1.22286 0.83754 0.95378 1.00868 1.88057 1.22369 1.46902 1.74004 1.21477 0.87693 0.91290 0.96748 1.20805 0.96366 1.01328 0.97138 1.21921 0.92734 0.96631 0.97711 1.22509 0.98235 0.99280 0.99378 1.23325 0.99269 0.93825 0.90391 1.67731 1.01659 1.21819 1.31631 1.22961 0.93643 0.92517 0.96365 1.21237 0.94390 1.07770 1.11926 0.88905 0.86230 0.82616 0.73273 0.86249 0.86386 0.89486 0.89392 0.82824 0.81718 0.80413 0.81941 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.12 13.92 21.84 0.30 -41.81 16 2 C 0.05 2.44 5.45 85.29 0.47 2.91 16 3 Si 0.97 38.71 24.42 68.60 1.68 40.39 16 4 H -0.24 -8.21 6.70 99.48 0.67 -7.55 16 5 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.26 -11.06 6.66 99.48 0.66 -10.40 16 7 C -0.46 -24.87 9.66 23.52 0.23 -24.64 16 8 H 0.07 3.74 8.06 -2.91 -0.02 3.71 16 9 C 0.11 5.56 5.23 -21.11 -0.11 5.45 16 10 C -0.29 -13.46 9.90 22.84 0.23 -13.24 16 11 C 0.13 5.81 11.15 84.50 0.94 6.76 16 12 N -0.58 -28.03 7.87 -193.54 -1.52 -29.56 16 13 C 0.37 16.26 7.41 132.75 0.98 17.25 16 14 N -0.65 -21.71 5.39 -308.66 -1.66 -23.37 16 15 C 0.49 16.31 7.86 87.66 0.69 17.00 16 16 O -0.51 -23.11 14.77 16.02 0.24 -22.88 16 17 C 0.06 1.08 6.42 71.24 0.46 1.54 16 18 O -0.39 -9.48 9.86 -129.94 -1.28 -10.76 16 19 C 0.10 1.53 6.09 71.24 0.43 1.96 16 20 C -0.15 -2.83 5.53 -19.78 -0.11 -2.94 16 21 C -0.06 -1.02 9.86 22.47 0.22 -0.80 16 22 C -0.17 -2.48 10.11 22.36 0.23 -2.26 16 23 C 0.09 1.50 11.18 84.68 0.95 2.45 16 24 N -0.52 -11.62 10.36 -195.84 -2.03 -13.65 16 25 C 0.10 2.09 10.86 84.67 0.92 3.01 16 26 C -0.33 -15.03 7.01 22.98 0.16 -14.87 16 27 H 0.30 13.46 8.29 -92.71 -0.77 12.69 16 28 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 29 H 0.16 6.03 8.06 -2.91 -0.02 6.01 16 30 H 0.43 10.10 8.69 -92.71 -0.81 9.30 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.12 5.06 4.23 -2.91 -0.01 5.04 16 Total: -1.00 -78.20 340.87 2.61 -75.59 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.21 Total: 26.47 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.68 Total: -0.42 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.91 Total: -108.39 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.04 Total: -33.63 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.68 Total: 40.39 kcal Total: -78.20 2.61 -75.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516674159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.142 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds