Wall clock time and date at job start Tue Mar 31 2020 10:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86805 * 120.00054 * 2 1 4 4 H 1.48507 * 109.46881 * 269.99967 * 3 2 1 5 5 H 1.48499 * 109.47061 * 29.99215 * 3 2 1 6 6 H 1.48498 * 109.47078 * 149.99865 * 3 2 1 7 7 C 1.40028 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00192 * 189.85417 * 7 2 1 9 9 C 1.41548 * 119.99949 * 9.84471 * 7 2 1 10 10 C 1.41177 * 120.99674 * 206.23965 * 9 7 2 11 11 C 1.37585 * 119.01721 * 180.02562 * 10 9 7 12 12 N 1.32087 * 121.11539 * 0.02562 * 11 10 9 13 13 C 1.32481 * 122.22649 * 359.97438 * 12 11 10 14 14 N 1.39376 * 119.58217 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99949 * 354.66922 * 14 13 12 16 16 O 1.21498 * 119.99495 * 354.91999 * 15 14 13 17 17 C 1.48285 * 120.00122 * 174.91805 * 15 14 13 18 18 N 1.31514 * 127.15412 * 0.02562 * 17 15 14 19 19 O 1.21433 * 111.51841 * 179.97438 * 18 17 15 20 20 C 1.33193 * 111.57496 * 359.96751 * 19 18 17 21 21 C 1.35367 * 106.63855 * 359.83793 * 20 19 18 22 22 C 1.50066 * 124.93521 * 179.46897 * 21 20 19 23 23 C 1.53543 * 108.28956 * 344.41808 * 22 21 20 24 24 C 1.53108 * 109.50542 * 48.98899 * 23 22 21 25 25 C 1.50599 * 129.59756 * 180.18912 * 20 19 18 26 26 C 1.38625 * 120.83637 * 0.02562 * 13 12 11 27 27 H 0.97006 * 119.99614 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.49076 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.44517 * 179.97438 * 11 10 9 30 30 H 0.97003 * 120.00261 * 174.66940 * 14 13 12 31 31 H 1.09004 * 109.84845 * 224.62395 * 22 21 20 32 32 H 1.08993 * 109.55113 * 104.05152 * 22 21 20 33 33 H 1.08995 * 109.46691 * 288.97801 * 23 22 21 34 34 H 1.09002 * 109.46846 * 168.99486 * 23 22 21 35 35 H 1.09005 * 109.42907 * 170.06126 * 24 23 22 36 36 H 1.09004 * 109.38791 * 50.19510 * 24 23 22 37 37 H 1.09003 * 109.69538 * 282.91131 * 25 20 19 38 38 H 1.08999 * 109.69596 * 43.46570 * 25 20 19 39 39 H 1.07997 * 120.60057 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4890 2.0464 -1.4002 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0757 -1.2195 0.1606 9 6 1.3155 -2.4296 -0.2085 10 6 1.8139 -3.6468 0.3043 11 6 1.1083 -4.8058 0.0765 12 7 -0.0197 -4.7943 -0.6107 13 6 -0.5296 -3.6794 -1.1129 14 7 -1.7237 -3.7309 -1.8299 15 6 -2.2961 -4.9207 -2.1011 16 8 -1.7261 -5.9512 -1.8021 17 6 -3.6214 -4.9718 -2.7643 18 7 -4.3580 -3.9518 -3.1471 19 8 -5.3946 -4.3192 -3.6619 20 6 -5.4835 -5.6479 -3.6897 21 6 -4.3515 -6.1241 -3.1205 22 6 -4.0311 -7.5778 -2.9303 23 6 -5.3247 -8.3844 -3.1141 24 6 -6.0226 -7.9443 -4.4039 25 6 -6.5805 -6.5253 -4.2326 26 6 0.1099 -2.4624 -0.9351 27 1 -0.4850 0.8401 -0.0004 28 1 2.7353 -3.6679 0.8672 29 1 1.4835 -5.7410 0.4653 30 1 -2.1428 -2.9106 -2.1338 31 1 -3.6352 -7.7415 -1.9280 32 1 -3.2952 -7.8891 -3.6715 33 1 -5.9857 -8.2091 -2.2654 34 1 -5.0853 -9.4460 -3.1748 35 1 -6.8396 -8.6307 -4.6264 36 1 -5.3059 -7.9554 -5.2251 37 1 -7.4175 -6.5415 -3.5345 38 1 -6.9140 -6.1422 -5.1971 39 1 -0.3094 -1.5559 -1.3458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532434908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:14 Heat of formation + Delta-G solvation = 53.206536 kcal Electronic energy + Delta-G solvation = -24921.110505 eV Core-core repulsion = 21217.580607 eV Total energy + Delta-G solvation = -3703.529898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.08104 -39.60165 -38.00830 -37.63193 -34.40985 -33.96565 -33.63673 -31.11096 -30.59554 -30.41470 -28.69120 -26.03971 -25.11292 -24.09576 -22.90612 -22.01684 -21.36196 -20.24347 -19.32659 -17.89383 -17.79855 -17.50268 -16.51010 -15.79038 -15.27836 -15.17120 -14.62069 -14.25382 -14.22572 -14.18293 -14.03667 -13.75896 -13.45838 -13.29232 -12.82377 -12.63525 -12.57728 -12.39671 -11.49828 -11.44675 -11.25108 -11.23346 -11.18192 -10.94852 -10.87458 -10.35441 -10.19285 -10.15210 -9.84224 -9.70228 -9.43100 -9.16373 -8.03082 -7.82783 -7.10010 -6.77695 -4.65575 1.16700 1.67798 2.66450 2.77875 2.81541 3.01463 3.04774 3.21112 3.32450 3.67844 3.84355 4.07289 4.39600 4.51557 4.55120 4.66999 4.80568 4.88157 5.01877 5.18279 5.24412 5.38092 5.50955 5.55987 5.63219 5.69619 5.76049 5.87511 5.94304 6.03452 6.20257 6.51581 6.58851 6.75510 6.91718 7.09745 7.31575 7.40951 7.67056 7.87832 8.04629 8.14032 8.35664 8.63176 8.72175 8.75584 9.60666 10.07819 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.003074 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.117866 B = 9106.802594 C =10164.778031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.142 3.858 10 C -0.280 4.280 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.333 3.667 14 N -0.642 5.642 15 C 0.583 3.417 16 O -0.461 6.461 17 C -0.009 4.009 18 N -0.338 5.338 19 O 0.125 5.875 20 C -0.046 4.046 21 C -0.151 4.151 22 C -0.046 4.046 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.033 4.033 26 C -0.233 4.233 27 H 0.282 0.718 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.414 0.586 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 -9.474 -8.288 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.133 3.867 10 C -0.304 4.304 11 C -0.036 4.036 12 N -0.274 5.274 13 C 0.109 3.891 14 N -0.288 5.288 15 C 0.365 3.635 16 O -0.328 6.328 17 C -0.168 4.168 18 N -0.041 5.041 19 O 0.052 5.948 20 C -0.110 4.110 21 C -0.156 4.156 22 C -0.083 4.083 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.071 4.071 26 C -0.259 4.259 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.250 0.750 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.263 -9.572 -8.111 18.257 hybrid contribution 0.641 1.517 0.150 1.654 sum -12.622 -8.054 -7.961 16.958 Atomic orbital electron populations 1.69738 1.07599 1.29350 1.35242 1.25976 0.94894 1.01546 0.91997 0.86177 0.80333 0.80074 0.79364 1.19207 1.20165 1.18500 1.19596 0.95891 0.89942 1.43001 0.89930 1.17592 0.90279 0.92378 0.86426 1.21934 1.04131 0.94358 1.09967 1.21749 0.90485 0.96619 0.94728 1.67149 1.15135 1.27924 1.17237 1.18132 0.86189 0.91184 0.93614 1.43236 1.23091 1.08654 1.53792 1.16948 0.82216 0.84823 0.79536 1.90856 1.60920 1.32544 1.48515 1.23322 0.98783 0.90105 1.04583 1.74596 0.94807 1.22931 1.11808 1.84671 1.31084 1.21694 1.57350 1.24092 0.99693 0.83561 1.03688 1.20653 0.94054 0.97662 1.03182 1.20009 0.97554 0.86616 1.04147 1.21720 0.96569 1.00049 0.97733 1.21655 1.00857 0.94268 0.98845 1.20232 0.93273 0.91841 1.01724 1.21694 1.00794 0.95488 1.07904 0.90680 0.87802 0.85701 0.75012 0.88991 0.89854 0.91381 0.90619 0.90146 0.91014 0.88833 0.88981 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.90 10.70 55.55 0.59 -19.30 16 2 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 3 Si 0.92 18.19 29.57 -169.99 -5.03 13.16 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.71 9.14 -37.65 -0.34 -12.06 16 8 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 9 C 0.14 3.76 5.60 -106.55 -0.60 3.17 16 10 C -0.28 -6.89 9.90 -38.70 -0.38 -7.28 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.56 -14.35 7.88 -12.54 -0.10 -14.45 16 13 C 0.33 8.39 7.40 -154.77 -1.15 7.24 16 14 N -0.64 -14.01 5.38 -12.23 -0.07 -14.07 16 15 C 0.58 12.24 7.80 -12.13 -0.09 12.14 16 16 O -0.46 -10.74 14.38 5.37 0.08 -10.67 16 17 C -0.01 -0.16 7.18 -82.83 -0.60 -0.76 16 18 N -0.34 -5.53 11.90 33.29 0.40 -5.13 16 19 O 0.12 1.70 11.18 19.18 0.21 1.91 16 20 C -0.05 -0.53 7.38 -35.38 -0.26 -0.79 16 21 C -0.15 -2.12 6.05 -104.91 -0.63 -2.76 16 22 C -0.05 -0.55 5.66 -27.91 -0.16 -0.71 16 23 C -0.12 -0.98 5.92 -26.39 -0.16 -1.13 16 24 C -0.12 -0.74 5.88 -26.45 -0.16 -0.89 16 25 C -0.03 -0.22 6.31 -27.71 -0.17 -0.40 16 26 C -0.23 -6.09 8.61 -38.47 -0.33 -6.42 16 27 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 28 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.13 2.59 8.06 -52.48 -0.42 2.17 16 30 H 0.41 8.15 8.48 -40.82 -0.35 7.80 16 31 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.13 3.50 6.11 -52.49 -0.32 3.18 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -31.25 333.24 -8.63 -39.88 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.42 Total: 9.91 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -5.32 Total: -6.27 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.83 Total: -52.96 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.29 Total: -8.76 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.25 -8.63 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.090 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds