Wall clock time and date at job start Tue Mar 31 2020 10:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86805 * 120.00054 * 2 1 4 4 H 1.48507 * 109.46881 * 269.99967 * 3 2 1 5 5 H 1.48499 * 109.47061 * 29.99215 * 3 2 1 6 6 H 1.48498 * 109.47078 * 149.99865 * 3 2 1 7 7 C 1.40028 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00192 * 189.85417 * 7 2 1 9 9 C 1.41548 * 119.99949 * 9.84471 * 7 2 1 10 10 C 1.41177 * 120.99674 * 206.23965 * 9 7 2 11 11 C 1.37585 * 119.01721 * 180.02562 * 10 9 7 12 12 N 1.32087 * 121.11539 * 0.02562 * 11 10 9 13 13 C 1.32481 * 122.22649 * 359.97438 * 12 11 10 14 14 N 1.39376 * 119.58217 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99949 * 354.66922 * 14 13 12 16 16 O 1.21498 * 119.99495 * 354.91999 * 15 14 13 17 17 C 1.48285 * 120.00122 * 174.91805 * 15 14 13 18 18 N 1.31514 * 127.15412 * 0.02562 * 17 15 14 19 19 O 1.21433 * 111.51841 * 179.97438 * 18 17 15 20 20 C 1.33193 * 111.57496 * 359.96751 * 19 18 17 21 21 C 1.35367 * 106.63855 * 359.83793 * 20 19 18 22 22 C 1.50066 * 124.93521 * 179.46897 * 21 20 19 23 23 C 1.53543 * 108.28956 * 344.41808 * 22 21 20 24 24 C 1.53108 * 109.50542 * 48.98899 * 23 22 21 25 25 C 1.50599 * 129.59756 * 180.18912 * 20 19 18 26 26 C 1.38625 * 120.83637 * 0.02562 * 13 12 11 27 27 H 0.97006 * 119.99614 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.49076 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.44517 * 179.97438 * 11 10 9 30 30 H 0.97003 * 120.00261 * 174.66940 * 14 13 12 31 31 H 1.09004 * 109.84845 * 224.62395 * 22 21 20 32 32 H 1.08993 * 109.55113 * 104.05152 * 22 21 20 33 33 H 1.08995 * 109.46691 * 288.97801 * 23 22 21 34 34 H 1.09002 * 109.46846 * 168.99486 * 23 22 21 35 35 H 1.09005 * 109.42907 * 170.06126 * 24 23 22 36 36 H 1.09004 * 109.38791 * 50.19510 * 24 23 22 37 37 H 1.09003 * 109.69538 * 282.91131 * 25 20 19 38 38 H 1.08999 * 109.69596 * 43.46570 * 25 20 19 39 39 H 1.07997 * 120.60057 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4890 2.0464 -1.4002 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0757 -1.2195 0.1606 9 6 1.3155 -2.4296 -0.2085 10 6 1.8139 -3.6468 0.3043 11 6 1.1083 -4.8058 0.0765 12 7 -0.0197 -4.7943 -0.6107 13 6 -0.5296 -3.6794 -1.1129 14 7 -1.7237 -3.7309 -1.8299 15 6 -2.2961 -4.9207 -2.1011 16 8 -1.7261 -5.9512 -1.8021 17 6 -3.6214 -4.9718 -2.7643 18 7 -4.3580 -3.9518 -3.1471 19 8 -5.3946 -4.3192 -3.6619 20 6 -5.4835 -5.6479 -3.6897 21 6 -4.3515 -6.1241 -3.1205 22 6 -4.0311 -7.5778 -2.9303 23 6 -5.3247 -8.3844 -3.1141 24 6 -6.0226 -7.9443 -4.4039 25 6 -6.5805 -6.5253 -4.2326 26 6 0.1099 -2.4624 -0.9351 27 1 -0.4850 0.8401 -0.0004 28 1 2.7353 -3.6679 0.8672 29 1 1.4835 -5.7410 0.4653 30 1 -2.1428 -2.9106 -2.1338 31 1 -3.6352 -7.7415 -1.9280 32 1 -3.2952 -7.8891 -3.6715 33 1 -5.9857 -8.2091 -2.2654 34 1 -5.0853 -9.4460 -3.1748 35 1 -6.8396 -8.6307 -4.6264 36 1 -5.3059 -7.9554 -5.2251 37 1 -7.4175 -6.5415 -3.5345 38 1 -6.9140 -6.1422 -5.1971 39 1 -0.3094 -1.5559 -1.3458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532434908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:13 Heat of formation + Delta-G solvation = 35.053068 kcal Electronic energy + Delta-G solvation = -24921.897698 eV Core-core repulsion = 21217.580607 eV Total energy + Delta-G solvation = -3704.317091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.26981 -41.38228 -39.67950 -38.58396 -36.25890 -35.69195 -34.93739 -32.52425 -32.02823 -31.34685 -30.49054 -27.99213 -26.42659 -25.11914 -23.93435 -23.76056 -23.03168 -21.60402 -20.55726 -19.59137 -19.07305 -18.83088 -17.89942 -17.52169 -17.05733 -16.32120 -16.14837 -16.08098 -15.76003 -15.54333 -14.87312 -14.81342 -14.78486 -14.41887 -14.29383 -14.26989 -14.18446 -13.26502 -13.22087 -12.92771 -12.75248 -12.53918 -12.22159 -11.92574 -11.91252 -11.85442 -11.67374 -11.62862 -11.37635 -11.31690 -11.26309 -10.15465 -10.01741 -9.77407 -9.00989 -8.64935 -6.64166 -0.12121 0.51519 0.85466 0.93763 1.38468 1.51851 1.54196 1.67146 1.93646 2.04248 2.17099 2.73661 2.77785 3.39673 3.61534 3.65804 3.87232 3.96841 4.00549 4.17216 4.24906 4.34403 4.47612 4.58282 4.66512 4.68921 4.84379 4.88998 4.94410 4.98483 5.01567 5.17522 5.18076 5.20543 5.33857 5.38769 5.44932 5.50078 5.83193 5.98113 6.27527 6.44369 6.70851 6.77508 6.86026 7.00099 7.67741 8.23959 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.003074 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.117866 B = 9106.802594 C =10164.778031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.113 3.887 10 C -0.291 4.291 11 C 0.115 3.885 12 N -0.578 5.578 13 C 0.328 3.672 14 N -0.642 5.642 15 C 0.582 3.418 16 O -0.491 6.491 17 C -0.041 4.041 18 N -0.356 5.356 19 O 0.140 5.860 20 C -0.019 4.019 21 C -0.170 4.170 22 C -0.047 4.047 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.033 4.033 26 C -0.253 4.253 27 H 0.291 0.709 28 H 0.123 0.877 29 H 0.157 0.843 30 H 0.420 0.580 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.061 -9.692 -9.346 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.510 4.510 8 H 0.106 0.894 9 C 0.105 3.895 10 C -0.314 4.314 11 C -0.039 4.039 12 N -0.298 5.298 13 C 0.103 3.897 14 N -0.289 5.289 15 C 0.366 3.634 16 O -0.360 6.360 17 C -0.197 4.197 18 N -0.057 5.057 19 O 0.064 5.936 20 C -0.084 4.084 21 C -0.176 4.176 22 C -0.085 4.085 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.070 4.070 26 C -0.279 4.279 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.174 0.826 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.120 -9.793 -9.164 20.212 hybrid contribution 1.116 1.541 0.453 1.956 sum -14.004 -8.252 -8.711 18.442 Atomic orbital electron populations 1.69797 1.09120 1.30896 1.34697 1.26914 0.95681 1.04870 0.90816 0.85028 0.78954 0.75102 0.79597 1.18584 1.19212 1.17860 1.19916 0.96368 0.90719 1.44009 0.89351 1.18033 0.90869 0.93667 0.86942 1.22149 1.04965 0.94000 1.10310 1.22277 0.89874 0.97851 0.93878 1.67271 1.16095 1.28200 1.18217 1.18342 0.86965 0.90934 0.93427 1.43271 1.22399 1.09583 1.53608 1.17377 0.83235 0.83919 0.78823 1.90815 1.62190 1.33243 1.49783 1.22968 0.97894 0.92184 1.06660 1.74580 0.95557 1.23123 1.12428 1.84640 1.29737 1.23107 1.56080 1.25008 0.99752 0.82515 1.01149 1.20967 0.94665 0.97848 1.04107 1.20061 0.99853 0.86280 1.02269 1.21730 0.94417 1.00190 0.99167 1.21708 1.01733 0.94416 0.97370 1.20660 0.92025 0.90863 1.03474 1.21652 1.01555 0.95498 1.09161 0.89775 0.85941 0.82572 0.74253 0.91818 0.90529 0.90959 0.89029 0.86645 0.91362 0.86239 0.86142 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.76 10.70 21.84 0.23 -41.52 16 2 C 0.03 1.63 5.31 85.29 0.45 2.08 16 3 Si 0.99 36.87 29.57 68.60 2.03 38.89 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.48 -25.22 9.14 23.52 0.21 -25.01 16 8 H 0.09 4.39 7.87 -2.91 -0.02 4.37 16 9 C 0.11 6.21 5.60 -21.11 -0.12 6.09 16 10 C -0.29 -14.59 9.90 22.84 0.23 -14.37 16 11 C 0.11 5.63 11.15 84.50 0.94 6.57 16 12 N -0.58 -30.91 7.88 -193.57 -1.53 -32.43 16 13 C 0.33 17.31 7.40 132.79 0.98 18.29 16 14 N -0.64 -29.58 5.38 -310.89 -1.67 -31.26 16 15 C 0.58 25.75 7.80 86.92 0.68 26.43 16 16 O -0.49 -24.11 14.38 -3.71 -0.05 -24.17 16 17 C -0.04 -1.47 7.18 42.54 0.31 -1.16 16 18 N -0.36 -11.75 11.90 -48.95 -0.58 -12.33 16 19 O 0.14 3.63 11.18 78.66 0.88 4.51 16 20 C -0.02 -0.41 7.38 24.99 0.18 -0.22 16 21 C -0.17 -4.77 6.05 -20.05 -0.12 -4.89 16 22 C -0.05 -1.13 5.66 29.83 0.17 -0.96 16 23 C -0.12 -1.58 5.92 30.81 0.18 -1.40 16 24 C -0.11 -0.95 5.88 30.77 0.18 -0.77 16 25 C -0.03 -0.30 6.31 29.96 0.19 -0.11 16 26 C -0.25 -13.80 8.61 22.99 0.20 -13.61 16 27 H 0.29 13.36 8.29 -92.70 -0.77 12.60 16 28 H 0.12 5.51 8.06 -2.91 -0.02 5.49 16 29 H 0.16 6.45 8.06 -2.91 -0.02 6.43 16 30 H 0.42 17.61 8.48 -92.71 -0.79 16.83 16 31 H 0.06 1.86 7.84 -2.39 -0.02 1.84 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.07 0.66 8.12 -2.38 -0.02 0.64 16 37 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.13 6.89 6.11 -2.91 -0.02 6.88 16 Total: -1.00 -71.37 333.24 4.30 -67.08 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.32 Total: 34.26 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.67 Total: -3.03 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -3.55 Total: -117.54 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.83 Total: -19.65 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.89 kcal Total: -71.37 4.30 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532434908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.131 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds