Wall clock time and date at job start Tue Mar 31 2020 11:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47021 * 2 1 4 4 C 1.38015 * 119.51302 * 125.30679 * 3 2 1 5 5 C 1.39948 * 119.13085 * 180.23068 * 4 3 2 6 6 C 1.48119 * 120.89292 * 179.74750 * 5 4 3 7 7 O 1.21517 * 120.00105 * 359.71579 * 6 5 4 8 8 N 1.34782 * 119.99899 * 179.97438 * 6 5 4 9 9 C 1.39372 * 120.00011 * 174.02954 * 8 6 5 10 10 C 1.38627 * 119.58402 * 185.46347 * 9 8 6 11 11 C 1.40803 * 118.79751 * 179.97438 * 10 9 8 12 12 C 1.41542 * 120.99507 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99651 * 212.38312 * 12 11 10 14 14 C 1.40029 * 120.00345 * 32.37759 * 12 11 10 15 15 N 1.30746 * 119.99719 * 357.43064 * 14 12 11 16 16 Si 1.86800 * 120.00259 * 177.42495 * 14 12 11 17 17 H 1.48498 * 109.46648 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46707 * 119.99974 * 16 14 12 19 19 H 1.48496 * 109.46926 * 240.00242 * 16 14 12 20 20 C 1.41178 * 118.00719 * 0.02562 * 11 10 9 21 21 C 1.37596 * 119.02239 * 359.97438 * 20 11 10 22 22 N 1.32080 * 121.10639 * 359.74973 * 21 20 11 23 23 C 1.39627 * 118.21274 * 359.47704 * 5 4 3 24 24 C 1.38850 * 118.94583 * 0.27070 * 23 5 4 25 25 O 1.35688 * 119.62085 * 180.02562 * 24 23 5 26 26 N 1.31878 * 119.51467 * 305.00195 * 3 2 1 27 27 H 1.09007 * 109.47233 * 299.99936 * 1 2 3 28 28 H 1.09002 * 109.47562 * 59.99651 * 1 2 3 29 29 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47623 * 240.00324 * 2 1 3 31 31 H 1.09003 * 109.47839 * 119.99880 * 2 1 3 32 32 H 1.08006 * 120.43499 * 359.97438 * 4 3 2 33 33 H 0.96996 * 119.99833 * 354.02946 * 8 6 5 34 34 H 1.07997 * 120.59986 * 0.02562 * 10 9 8 35 35 H 0.96995 * 120.00045 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.49121 * 180.02562 * 20 11 10 37 37 H 1.07997 * 119.44435 * 179.97438 * 21 20 11 38 38 H 1.07997 * 120.52913 * 180.29943 * 23 5 4 39 39 H 0.96696 * 113.99613 * 89.99715 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9133 1.8305 0.9802 5 6 3.3709 3.1530 0.9754 6 6 4.3126 3.6357 2.0118 7 8 4.6942 2.8813 2.8848 8 7 4.7422 4.9130 1.9897 9 6 5.5277 5.4022 3.0319 10 6 5.8699 6.7453 3.0588 11 6 6.6637 7.2218 4.1197 12 6 7.0408 8.5841 4.1930 13 1 7.9913 8.8587 4.6262 14 6 6.1818 9.5758 3.7037 15 7 5.0539 9.2405 3.1337 16 14 6.6472 11.3776 3.8654 17 1 7.9640 11.4898 4.5425 18 1 6.7316 11.9900 2.5152 19 1 5.6162 12.0851 4.6663 20 6 7.0730 6.2999 5.1074 21 6 6.6834 4.9850 4.9958 22 7 5.9335 4.5788 3.9872 23 6 2.9204 4.0037 -0.0360 24 6 2.0379 3.5088 -0.9869 25 8 1.5918 4.3234 -1.9761 26 7 1.6281 2.2528 -0.9401 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2421 1.1405 1.7433 33 1 4.5046 5.4918 1.2485 34 1 5.5331 7.4141 2.2807 35 1 4.4586 9.9274 2.7951 36 1 7.6823 6.6221 5.9389 37 1 6.9931 4.2739 5.7473 38 1 3.2533 5.0302 -0.0783 39 1 2.1444 4.3176 -2.7696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537590690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:07 Heat of formation + Delta-G solvation = -4.730226 kcal Electronic energy + Delta-G solvation = -24475.306385 eV Core-core repulsion = 20769.264161 eV Total energy + Delta-G solvation = -3706.042224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93269 -39.52008 -37.93505 -37.35812 -34.51288 -34.19529 -33.71956 -32.30199 -30.58896 -29.66626 -28.66133 -26.06784 -25.27503 -24.01401 -22.61866 -22.02979 -21.27781 -19.85118 -18.81618 -17.90107 -17.23250 -16.82747 -15.93031 -15.67225 -15.56729 -15.20318 -14.90366 -14.58943 -14.26284 -14.24631 -14.03751 -13.83306 -13.29337 -12.88341 -12.66562 -12.54652 -12.36310 -12.16598 -11.99478 -11.63085 -11.48689 -11.25927 -11.23647 -10.97134 -10.43614 -10.17393 -10.01805 -9.95524 -9.83256 -9.49345 -9.46843 -9.00263 -7.99601 -7.88233 -7.13914 -6.76408 -4.70781 0.59705 0.78815 2.48364 2.74207 2.99691 3.03249 3.05009 3.18704 3.31544 3.39948 3.77596 3.83810 4.23928 4.54624 4.64584 4.78001 4.83209 4.99068 5.04087 5.10427 5.29569 5.51598 5.55346 5.58745 5.67896 5.80567 5.86067 5.99985 6.06597 6.25993 6.45909 6.52494 6.70066 6.87593 7.08508 7.25478 7.25791 7.37770 7.64391 7.69346 7.87270 8.08238 8.32297 8.58692 8.68796 8.72019 9.54127 10.08921 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.003110 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.069645 B = 8999.944146 C =10286.773573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.149 3.851 4 C -0.126 4.126 5 C -0.058 4.058 6 C 0.540 3.460 7 O -0.466 6.466 8 N -0.647 5.647 9 C 0.329 3.671 10 C -0.228 4.228 11 C 0.139 3.861 12 C -0.456 4.456 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.803 5.803 16 Si 0.919 3.081 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.273 4.273 21 C 0.114 3.886 22 N -0.550 5.550 23 C -0.163 4.163 24 C 0.312 3.688 25 O -0.479 6.479 26 N -0.489 5.489 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.409 0.591 34 H 0.139 0.861 35 H 0.280 0.720 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -9.368 -9.540 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.011 3.989 4 C -0.146 4.146 5 C -0.069 4.069 6 C 0.324 3.676 7 O -0.335 6.335 8 N -0.293 5.293 9 C 0.105 3.895 10 C -0.254 4.254 11 C 0.131 3.869 12 C -0.488 4.488 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.430 5.430 16 Si 0.743 3.257 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.297 4.297 21 C -0.040 4.040 22 N -0.269 5.269 23 C -0.185 4.185 24 C 0.133 3.867 25 O -0.286 6.286 26 N -0.210 5.210 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.170 0.830 33 H 0.245 0.755 34 H 0.156 0.844 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.076 -10.833 -9.333 15.954 hybrid contribution 1.039 2.529 -0.040 2.735 sum -6.037 -8.304 -9.373 13.901 Atomic orbital electron populations 1.21684 0.93951 1.01797 1.02817 1.20529 0.97165 0.89738 1.03585 1.20969 0.92709 0.95730 0.89445 1.22146 0.97294 0.95616 0.99586 1.20525 0.96961 0.94429 0.94983 1.18157 0.81548 0.82689 0.85160 1.90865 1.54026 1.53810 1.34843 1.43265 1.50510 1.11983 1.23559 1.18198 0.93104 0.89773 0.88474 1.21850 1.08885 0.91615 1.03028 1.17633 0.88200 0.92935 0.88146 1.19586 1.04126 0.90134 1.34917 0.90003 1.25938 0.94120 1.01982 0.92391 1.69696 1.08634 1.35745 1.28960 0.86084 0.79785 0.80974 0.78843 1.18416 1.19802 1.19828 1.22035 1.10729 0.95109 1.01798 1.21783 0.94138 0.93704 0.94371 1.67180 1.17931 1.37235 1.04505 1.22359 0.98182 1.01700 0.96249 1.18910 0.90980 0.86495 0.90324 1.84816 1.54921 1.61400 1.27429 1.66736 1.24536 1.03673 1.26020 0.92752 0.91576 0.92190 0.89709 0.89728 0.83011 0.75522 0.84350 0.90892 0.87716 0.85648 0.83591 0.74184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.77 37.15 0.36 -0.87 16 2 C -0.07 -0.64 6.33 -27.89 -0.18 -0.81 16 3 C 0.15 1.78 6.17 -82.65 -0.51 1.27 16 4 C -0.13 -1.67 9.27 -39.02 -0.36 -2.03 16 5 C -0.06 -0.86 5.91 -104.68 -0.62 -1.47 16 6 C 0.54 10.21 7.75 -12.20 -0.09 10.11 16 7 O -0.47 -10.43 14.70 5.35 0.08 -10.35 16 8 N -0.65 -12.50 5.34 -12.27 -0.07 -12.57 16 9 C 0.33 7.80 7.41 -154.77 -1.15 6.66 16 10 C -0.23 -5.65 8.61 -38.47 -0.33 -5.98 16 11 C 0.14 3.58 5.59 -106.55 -0.60 2.98 16 12 C -0.46 -11.47 9.12 -37.65 -0.34 -11.81 16 13 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 14 C 0.07 1.72 5.43 -17.34 -0.09 1.63 16 15 N -0.80 -19.49 10.59 55.55 0.59 -18.90 16 16 Si 0.92 17.84 29.56 -169.99 -5.03 12.82 16 17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.27 -6.52 9.90 -38.70 -0.38 -6.90 16 21 C 0.11 2.67 11.15 -17.68 -0.20 2.47 16 22 N -0.55 -13.70 7.85 -12.54 -0.10 -13.80 16 23 C -0.16 -2.08 9.54 -38.84 -0.37 -2.45 16 24 C 0.31 3.89 7.74 -17.17 -0.13 3.76 16 25 O -0.48 -5.06 13.56 -18.77 -0.25 -5.32 16 26 N -0.49 -6.31 9.87 -9.60 -0.09 -6.41 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 32 H 0.15 1.92 7.62 -52.48 -0.40 1.52 16 33 H 0.41 6.49 6.86 -40.82 -0.28 6.21 16 34 H 0.14 3.41 6.12 -52.49 -0.32 3.08 16 35 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 36 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.13 2.54 8.06 -52.49 -0.42 2.11 16 38 H 0.15 1.60 6.55 -52.49 -0.34 1.26 16 39 H 0.40 2.14 9.06 45.56 0.41 2.55 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -32.27 341.17 -8.14 -40.41 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -3.41 Total: 12.43 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -4.99 Total: -3.45 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.33 Total: -51.68 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.18 Total: -15.67 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.27 -8.14 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537590690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.680 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds