Wall clock time and date at job start Tue Mar 31 2020 11:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47021 * 2 1 4 4 C 1.38015 * 119.51302 * 125.30679 * 3 2 1 5 5 C 1.39948 * 119.13085 * 180.23068 * 4 3 2 6 6 C 1.48119 * 120.89292 * 179.74750 * 5 4 3 7 7 O 1.21517 * 120.00105 * 359.71579 * 6 5 4 8 8 N 1.34782 * 119.99899 * 179.97438 * 6 5 4 9 9 C 1.39372 * 120.00011 * 174.02954 * 8 6 5 10 10 C 1.38627 * 119.58402 * 185.46347 * 9 8 6 11 11 C 1.40803 * 118.79751 * 179.97438 * 10 9 8 12 12 C 1.41542 * 120.99507 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99651 * 212.38312 * 12 11 10 14 14 C 1.40029 * 120.00345 * 32.37759 * 12 11 10 15 15 N 1.30746 * 119.99719 * 357.43064 * 14 12 11 16 16 Si 1.86800 * 120.00259 * 177.42495 * 14 12 11 17 17 H 1.48498 * 109.46648 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46707 * 119.99974 * 16 14 12 19 19 H 1.48496 * 109.46926 * 240.00242 * 16 14 12 20 20 C 1.41178 * 118.00719 * 0.02562 * 11 10 9 21 21 C 1.37596 * 119.02239 * 359.97438 * 20 11 10 22 22 N 1.32080 * 121.10639 * 359.74973 * 21 20 11 23 23 C 1.39627 * 118.21274 * 359.47704 * 5 4 3 24 24 C 1.38850 * 118.94583 * 0.27070 * 23 5 4 25 25 O 1.35688 * 119.62085 * 180.02562 * 24 23 5 26 26 N 1.31878 * 119.51467 * 305.00195 * 3 2 1 27 27 H 1.09007 * 109.47233 * 299.99936 * 1 2 3 28 28 H 1.09002 * 109.47562 * 59.99651 * 1 2 3 29 29 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47623 * 240.00324 * 2 1 3 31 31 H 1.09003 * 109.47839 * 119.99880 * 2 1 3 32 32 H 1.08006 * 120.43499 * 359.97438 * 4 3 2 33 33 H 0.96996 * 119.99833 * 354.02946 * 8 6 5 34 34 H 1.07997 * 120.59986 * 0.02562 * 10 9 8 35 35 H 0.96995 * 120.00045 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.49121 * 180.02562 * 20 11 10 37 37 H 1.07997 * 119.44435 * 179.97438 * 21 20 11 38 38 H 1.07997 * 120.52913 * 180.29943 * 23 5 4 39 39 H 0.96696 * 113.99613 * 89.99715 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9133 1.8305 0.9802 5 6 3.3709 3.1530 0.9754 6 6 4.3126 3.6357 2.0118 7 8 4.6942 2.8813 2.8848 8 7 4.7422 4.9130 1.9897 9 6 5.5277 5.4022 3.0319 10 6 5.8699 6.7453 3.0588 11 6 6.6637 7.2218 4.1197 12 6 7.0408 8.5841 4.1930 13 1 7.9913 8.8587 4.6262 14 6 6.1818 9.5758 3.7037 15 7 5.0539 9.2405 3.1337 16 14 6.6472 11.3776 3.8654 17 1 7.9640 11.4898 4.5425 18 1 6.7316 11.9900 2.5152 19 1 5.6162 12.0851 4.6663 20 6 7.0730 6.2999 5.1074 21 6 6.6834 4.9850 4.9958 22 7 5.9335 4.5788 3.9872 23 6 2.9204 4.0037 -0.0360 24 6 2.0379 3.5088 -0.9869 25 8 1.5918 4.3234 -1.9761 26 7 1.6281 2.2528 -0.9401 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2421 1.1405 1.7433 33 1 4.5046 5.4918 1.2485 34 1 5.5331 7.4141 2.2807 35 1 4.4586 9.9274 2.7951 36 1 7.6823 6.6221 5.9389 37 1 6.9931 4.2739 5.7473 38 1 3.2533 5.0302 -0.0783 39 1 2.1444 4.3176 -2.7696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537590690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:06 Heat of formation + Delta-G solvation = -27.558880 kcal Electronic energy + Delta-G solvation = -24476.296310 eV Core-core repulsion = 20769.264161 eV Total energy + Delta-G solvation = -3707.032149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06707 -41.02539 -39.57628 -38.29289 -36.21185 -35.69910 -34.90609 -33.32721 -32.44782 -30.77398 -30.20299 -27.93675 -26.40947 -25.05363 -23.91716 -23.61294 -22.73304 -21.26585 -19.92096 -19.58930 -18.49050 -18.06866 -17.33984 -17.00292 -16.78064 -16.60999 -16.29363 -16.06668 -15.80102 -15.54614 -15.28003 -14.96161 -14.65299 -14.41744 -14.33142 -14.07400 -13.38686 -13.19151 -12.99665 -12.87837 -12.81748 -12.71987 -12.36373 -12.21005 -11.94718 -11.85334 -11.60903 -11.46217 -11.23728 -11.04526 -10.61644 -9.94817 -9.88992 -9.72206 -8.93560 -8.56051 -6.61473 -0.54106 -0.17140 0.74088 0.97433 1.41737 1.52048 1.56522 1.76876 1.88025 2.20970 2.41158 2.61147 2.83029 3.24858 3.37985 3.67493 3.79858 3.82499 4.05301 4.16999 4.21638 4.39246 4.44684 4.65052 4.69414 4.74330 4.79789 4.86610 4.93153 5.05111 5.07060 5.19010 5.25544 5.29541 5.42153 5.46083 5.56163 5.91489 6.07862 6.36544 6.50567 6.53125 6.75985 6.77490 6.84065 7.05437 7.72318 8.31564 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.003110 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.069645 B = 8999.944146 C =10286.773573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C 0.153 3.847 4 C -0.130 4.130 5 C -0.070 4.070 6 C 0.542 3.458 7 O -0.506 6.506 8 N -0.641 5.641 9 C 0.327 3.673 10 C -0.245 4.245 11 C 0.110 3.890 12 C -0.483 4.483 13 H 0.084 0.916 14 C 0.034 3.966 15 N -0.826 5.826 16 Si 0.992 3.008 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.269 1.269 20 C -0.285 4.285 21 C 0.110 3.890 22 N -0.573 5.573 23 C -0.161 4.161 24 C 0.316 3.684 25 O -0.483 6.483 26 N -0.497 5.497 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.422 0.578 34 H 0.135 0.865 35 H 0.289 0.711 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -9.228 -10.581 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C 0.016 3.984 4 C -0.151 4.151 5 C -0.081 4.081 6 C 0.329 3.671 7 O -0.378 6.378 8 N -0.289 5.289 9 C 0.101 3.899 10 C -0.270 4.270 11 C 0.102 3.898 12 C -0.515 4.515 13 H 0.102 0.898 14 C -0.181 4.181 15 N -0.453 5.453 16 Si 0.813 3.187 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.194 1.194 20 C -0.309 4.309 21 C -0.044 4.044 22 N -0.293 5.293 23 C -0.182 4.182 24 C 0.136 3.864 25 O -0.294 6.294 26 N -0.218 5.218 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.261 0.739 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.171 0.829 38 H 0.178 0.822 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.777 -10.697 -10.426 16.841 hybrid contribution 1.190 2.435 0.208 2.718 sum -6.587 -8.262 -10.218 14.699 Atomic orbital electron populations 1.21663 0.93656 1.02920 1.01702 1.20681 0.97282 0.87879 1.05166 1.21425 0.91684 0.96967 0.88346 1.22266 0.97612 0.95047 1.00153 1.20176 0.97417 0.95594 0.94956 1.18703 0.81205 0.81859 0.85336 1.90830 1.55590 1.54663 1.36736 1.43246 1.49862 1.12699 1.23075 1.18411 0.92885 0.89610 0.88998 1.21824 1.09934 0.92070 1.03197 1.18067 0.88950 0.93865 0.88949 1.19854 1.04804 0.90630 1.36182 0.89819 1.26808 0.93707 1.06122 0.91496 1.69743 1.09253 1.37535 1.28755 0.84991 0.79415 0.75167 0.79146 1.18153 1.18736 1.19419 1.22226 1.11249 0.95242 1.02133 1.22262 0.93376 0.94209 0.94546 1.67310 1.18839 1.37796 1.05320 1.22436 0.98105 1.02067 0.95613 1.18976 0.90306 0.86513 0.90562 1.84768 1.55542 1.60910 1.28153 1.66867 1.24656 1.03954 1.26287 0.93736 0.92762 0.89998 0.88152 0.88100 0.82776 0.73858 0.84777 0.89989 0.86189 0.82857 0.82227 0.71465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.77 71.98 0.70 -1.44 16 2 C -0.07 -1.11 6.33 29.85 0.19 -0.92 16 3 C 0.15 3.42 6.17 42.50 0.26 3.69 16 4 C -0.13 -3.35 9.27 22.63 0.21 -3.14 16 5 C -0.07 -2.06 5.91 -19.90 -0.12 -2.18 16 6 C 0.54 20.74 7.75 86.87 0.67 21.41 16 7 O -0.51 -23.10 14.70 -3.77 -0.06 -23.16 16 8 N -0.64 -25.15 5.34 -311.04 -1.66 -26.81 16 9 C 0.33 15.82 7.41 132.79 0.98 16.80 16 10 C -0.24 -12.41 8.61 22.99 0.20 -12.22 16 11 C 0.11 5.77 5.59 -21.12 -0.12 5.65 16 12 C -0.48 -24.60 9.12 23.52 0.21 -24.39 16 13 H 0.08 4.08 7.85 -2.91 -0.02 4.05 16 14 C 0.03 1.58 5.43 85.29 0.46 2.05 16 15 N -0.83 -40.11 10.59 21.84 0.23 -39.88 16 16 Si 0.99 35.90 29.56 68.60 2.03 37.93 16 17 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 18 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 19 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 20 C -0.29 -13.79 9.90 22.84 0.23 -13.56 16 21 C 0.11 5.17 11.15 84.50 0.94 6.11 16 22 N -0.57 -29.02 7.85 -193.57 -1.52 -30.54 16 23 C -0.16 -3.92 9.54 22.75 0.22 -3.71 16 24 C 0.32 7.35 7.74 84.78 0.66 8.01 16 25 O -0.48 -9.18 13.56 -90.07 -1.22 -10.40 16 26 N -0.50 -11.97 9.87 -297.16 -2.93 -14.90 16 27 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.05 0.95 7.94 -2.39 -0.02 0.93 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.24 7.86 -2.39 -0.02 1.22 16 32 H 0.15 3.84 7.62 -2.91 -0.02 3.82 16 33 H 0.42 13.52 6.86 -92.71 -0.64 12.88 16 34 H 0.13 6.78 6.12 -2.91 -0.02 6.76 16 35 H 0.29 12.63 8.29 -92.71 -0.77 11.86 16 36 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 37 H 0.15 6.13 8.06 -2.91 -0.02 6.11 16 38 H 0.16 3.33 6.55 -2.91 -0.02 3.31 16 39 H 0.42 3.49 9.06 -74.06 -0.67 2.81 16 Total: -1.00 -69.77 341.17 0.40 -69.37 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.18 Total: 36.23 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.70 Total: 2.16 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -5.88 Total: -112.13 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.28 Total: -33.56 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -69.77 0.40 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537590690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.816 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds