Wall clock time and date at job start Tue Mar 31 2020 11:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 H 1.09000 * 109.47730 * 177.94254 * 3 2 1 5 5 C 1.50702 * 109.47194 * 57.94248 * 3 2 1 6 6 H 1.08001 * 120.00240 * 240.00692 * 5 3 2 7 7 C 1.37879 * 119.99854 * 60.00072 * 5 3 2 8 8 N 1.31510 * 119.99871 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99932 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47044 * 60.00043 * 9 7 5 11 11 H 1.48501 * 109.47121 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47269 * 300.00108 * 9 7 5 13 13 N 1.46904 * 109.47308 * 297.94309 * 3 2 1 14 14 C 1.46895 * 110.99982 * 273.74750 * 13 3 2 15 15 C 1.53005 * 109.46872 * 174.96484 * 14 13 3 16 16 H 1.08997 * 109.47347 * 59.99830 * 15 14 13 17 17 O 1.42896 * 109.46924 * 299.99261 * 15 14 13 18 18 C 1.53004 * 109.46687 * 179.97438 * 15 14 13 19 19 O 1.42908 * 109.46788 * 184.99752 * 18 15 14 20 20 C 1.35924 * 116.99855 * 180.02562 * 19 18 15 21 21 C 1.38726 * 120.04110 * 359.72247 * 20 19 18 22 22 C 1.38139 * 119.95252 * 179.79167 * 21 20 19 23 23 C 1.38371 * 120.04746 * 0.46566 * 22 21 20 24 24 Cl 1.73594 * 119.95949 * 179.76650 * 23 22 21 25 25 C 1.38372 * 120.08008 * 359.78720 * 23 22 21 26 26 C 1.38141 * 120.04046 * 359.97438 * 25 23 22 27 27 H 1.08999 * 109.47154 * 294.44032 * 1 2 3 28 28 H 1.09003 * 109.47513 * 174.43741 * 1 2 3 29 29 H 1.08998 * 109.47492 * 54.43734 * 1 2 3 30 30 H 1.09000 * 109.47154 * 120.00255 * 2 1 3 31 31 H 1.09005 * 109.47196 * 239.99838 * 2 1 3 32 32 H 0.97000 * 120.00094 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00465 * 149.78299 * 13 3 2 34 34 H 1.09005 * 109.47061 * 294.95754 * 14 13 3 35 35 H 1.08997 * 109.47274 * 54.96269 * 14 13 3 36 36 H 0.96703 * 114.00647 * 300.00613 * 17 15 14 37 37 H 1.08990 * 109.47362 * 304.99533 * 18 15 14 38 38 H 1.08997 * 109.47157 * 65.00195 * 18 15 14 39 39 H 1.08001 * 120.01840 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.97801 * 180.22702 * 22 21 20 41 41 H 1.07995 * 119.97908 * 179.97438 * 25 23 22 42 42 H 1.08008 * 120.01721 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4427 0.0369 5 6 1.4965 2.1675 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7869 1.7115 2.4725 8 7 2.5386 0.6442 2.6315 9 14 1.1126 2.6097 3.9651 10 1 -0.3715 2.6089 3.9147 11 1 1.5657 1.9240 5.2020 12 1 1.6070 4.0100 3.9654 13 7 1.5914 2.1205 -1.2235 14 6 2.5290 1.8855 -2.3296 15 6 1.9671 2.4993 -3.6136 16 1 1.8310 3.5718 -3.4743 17 8 0.7088 1.8951 -3.9194 18 6 2.9441 2.2551 -4.7655 19 8 2.4768 2.9270 -5.9370 20 6 3.2349 2.8104 -7.0591 21 6 4.4072 2.0692 -7.0312 22 6 5.1741 1.9483 -8.1738 23 6 4.7786 2.5737 -9.3431 24 17 5.7472 2.4252 -10.7760 25 6 3.6123 3.3177 -9.3714 26 6 2.8402 3.4369 -8.2321 27 1 -0.3633 0.4252 0.9356 28 1 -0.3634 -1.0228 -0.0996 29 1 -0.3634 0.5977 -0.8360 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.7426 0.3231 3.5238 33 1 1.4618 3.1082 -1.0629 34 1 3.4889 2.3464 -2.0964 35 1 2.6651 0.8131 -2.4689 36 1 0.7545 0.9389 -4.0564 37 1 3.9279 2.6382 -4.4950 38 1 3.0125 1.1854 -4.9632 39 1 4.7181 1.5840 -6.1178 40 1 6.0849 1.3683 -8.1535 41 1 3.3054 3.8055 -10.2847 42 1 1.9301 4.0181 -8.2545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576765479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:26 Heat of formation + Delta-G solvation = -77.305248 kcal Electronic energy + Delta-G solvation = -23073.879631 eV Core-core repulsion = 19465.797812 eV Total energy + Delta-G solvation = -3608.081820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48522 -38.40731 -37.27383 -36.40308 -35.62523 -32.66740 -31.61588 -31.05974 -30.28116 -29.13714 -26.61650 -24.65114 -23.26789 -23.04954 -22.23932 -21.35559 -19.10964 -18.54077 -17.08829 -16.75654 -16.56262 -16.35151 -15.55153 -15.12245 -14.97154 -14.72559 -14.08224 -13.90469 -13.86015 -13.53210 -13.35684 -13.25743 -12.90411 -12.51249 -12.14698 -11.96541 -11.78972 -11.73000 -11.49586 -11.12390 -10.95452 -10.90880 -10.83136 -10.69419 -10.39587 -10.15834 -10.04245 -9.60888 -9.48462 -9.36188 -8.84082 -8.50675 -8.42426 -7.29906 -6.06121 -4.11500 0.86532 0.90240 1.85930 2.85565 3.27893 3.28596 3.33456 3.36440 4.33788 4.37360 4.43725 4.50103 4.65690 4.76431 4.88535 4.95633 5.10441 5.17436 5.25480 5.33148 5.44935 5.53863 5.65245 5.65804 5.88515 5.92134 6.01046 6.19193 6.23504 6.49030 6.68213 6.82971 7.08108 7.20292 7.23697 7.45721 7.71073 7.74345 7.78503 7.88962 8.20128 8.31482 8.59694 8.96767 9.53421 10.99903 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.002050 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.366707 B =13652.202288 C =13785.101040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.673 5.673 14 C 0.034 3.966 15 C 0.117 3.883 16 H 0.104 0.896 17 O -0.537 6.537 18 C 0.025 3.975 19 O -0.298 6.298 20 C 0.142 3.858 21 C -0.200 4.200 22 C -0.068 4.068 23 C -0.079 4.079 24 Cl -0.076 7.076 25 C -0.070 4.070 26 C -0.142 4.142 27 H 0.051 0.949 28 H 0.012 0.988 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.333 0.667 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.370 0.630 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 2.316 -22.321 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.097 4.097 15 C 0.057 3.943 16 H 0.121 0.879 17 O -0.341 6.341 18 C -0.051 4.051 19 O -0.211 6.211 20 C 0.095 3.905 21 C -0.219 4.219 22 C -0.087 4.087 23 C -0.106 4.106 24 Cl -0.048 7.048 25 C -0.089 4.089 26 C -0.161 4.161 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.217 0.783 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.384 2.387 -22.360 22.910 hybrid contribution 1.105 0.192 1.056 1.540 sum 5.489 2.578 -21.305 22.151 Atomic orbital electron populations 1.21446 0.97324 0.97166 1.01821 1.21415 0.95267 0.98083 0.99114 1.19140 0.93147 0.91719 0.85088 0.98356 1.21135 1.31760 1.12048 0.90294 0.92279 1.24884 0.95048 0.95024 0.98896 1.69871 1.37314 1.23085 1.22536 0.86617 0.79507 0.79696 0.81939 1.20154 1.21363 1.20377 1.60537 1.46613 1.16445 1.06868 1.22455 0.94573 1.00512 0.92182 1.21932 0.83299 0.99326 0.89788 0.87865 1.86633 1.29468 1.25451 1.92540 1.23805 0.99592 0.97078 0.84633 1.86200 1.47914 1.69657 1.17296 1.19193 0.89977 0.93922 0.87407 1.21288 0.96308 1.04444 0.99900 1.20844 0.99581 0.97667 0.90582 1.20766 0.95829 1.05083 0.88884 1.98360 1.70885 1.97176 1.38359 1.20856 0.92465 0.97059 0.98516 1.20424 1.02159 1.03395 0.90133 0.92988 0.96928 0.93063 0.89723 0.97410 0.92883 0.84983 0.95360 0.91259 0.78335 0.90999 0.91424 0.84433 0.84729 0.84348 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.46 37.15 0.35 -2.31 16 2 C -0.10 -2.34 5.57 -26.74 -0.15 -2.49 16 3 C 0.22 5.14 2.30 -68.86 -0.16 4.98 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 5 C -0.51 -13.41 7.33 -34.44 -0.25 -13.67 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.60 11.34 55.43 0.63 -23.97 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.67 -13.26 5.38 -107.95 -0.58 -13.84 16 14 C 0.03 0.52 5.12 -3.82 -0.02 0.50 16 15 C 0.12 1.54 3.50 -26.73 -0.09 1.45 16 16 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 17 O -0.54 -7.89 13.17 -40.06 -0.53 -8.42 16 18 C 0.02 0.27 4.38 37.16 0.16 0.43 16 19 O -0.30 -3.60 10.10 -24.33 -0.25 -3.84 16 20 C 0.14 1.52 6.69 -39.22 -0.26 1.25 16 21 C -0.20 -1.89 9.04 -39.44 -0.36 -2.24 16 22 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 23 C -0.08 -0.71 6.32 -39.48 -0.25 -0.96 16 24 Cl -0.08 -0.65 28.95 -51.86 -1.50 -2.15 16 25 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 26 C -0.14 -1.35 9.99 -39.44 -0.39 -1.75 16 27 H 0.05 1.25 7.37 -51.93 -0.38 0.86 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 1.10 7.50 -51.93 -0.39 0.71 16 30 H 0.08 2.22 6.13 -51.93 -0.32 1.90 16 31 H 0.01 0.16 7.43 -51.93 -0.39 -0.23 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.33 6.57 8.25 -39.29 -0.32 6.25 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.07 7.40 -51.93 -0.38 0.69 16 36 H 0.37 4.38 9.05 45.56 0.41 4.79 16 37 H 0.07 0.68 7.65 -51.93 -0.40 0.28 16 38 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 39 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 361.52 15.07 5.45 5.45 Total: -1.00 -28.82 361.52 -9.47 -38.29 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.38 Total: 7.85 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.29 Total: -15.18 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.05 Total: -37.81 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.77 Total: -12.26 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.82 -9.47 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576765479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.016 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds