Wall clock time and date at job start Tue Mar 31 2020 11:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 H 1.09000 * 109.47730 * 177.94254 * 3 2 1 5 5 C 1.50702 * 109.47194 * 57.94248 * 3 2 1 6 6 H 1.08001 * 120.00240 * 240.00692 * 5 3 2 7 7 C 1.37879 * 119.99854 * 60.00072 * 5 3 2 8 8 N 1.31510 * 119.99871 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99932 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47044 * 60.00043 * 9 7 5 11 11 H 1.48501 * 109.47121 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47269 * 300.00108 * 9 7 5 13 13 N 1.46904 * 109.47308 * 297.94309 * 3 2 1 14 14 C 1.46895 * 110.99982 * 273.74750 * 13 3 2 15 15 C 1.53005 * 109.46872 * 174.96484 * 14 13 3 16 16 H 1.08997 * 109.47347 * 59.99830 * 15 14 13 17 17 O 1.42896 * 109.46924 * 299.99261 * 15 14 13 18 18 C 1.53004 * 109.46687 * 179.97438 * 15 14 13 19 19 O 1.42908 * 109.46788 * 184.99752 * 18 15 14 20 20 C 1.35924 * 116.99855 * 180.02562 * 19 18 15 21 21 C 1.38726 * 120.04110 * 359.72247 * 20 19 18 22 22 C 1.38139 * 119.95252 * 179.79167 * 21 20 19 23 23 C 1.38371 * 120.04746 * 0.46566 * 22 21 20 24 24 Cl 1.73594 * 119.95949 * 179.76650 * 23 22 21 25 25 C 1.38372 * 120.08008 * 359.78720 * 23 22 21 26 26 C 1.38141 * 120.04046 * 359.97438 * 25 23 22 27 27 H 1.08999 * 109.47154 * 294.44032 * 1 2 3 28 28 H 1.09003 * 109.47513 * 174.43741 * 1 2 3 29 29 H 1.08998 * 109.47492 * 54.43734 * 1 2 3 30 30 H 1.09000 * 109.47154 * 120.00255 * 2 1 3 31 31 H 1.09005 * 109.47196 * 239.99838 * 2 1 3 32 32 H 0.97000 * 120.00094 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00465 * 149.78299 * 13 3 2 34 34 H 1.09005 * 109.47061 * 294.95754 * 14 13 3 35 35 H 1.08997 * 109.47274 * 54.96269 * 14 13 3 36 36 H 0.96703 * 114.00647 * 300.00613 * 17 15 14 37 37 H 1.08990 * 109.47362 * 304.99533 * 18 15 14 38 38 H 1.08997 * 109.47157 * 65.00195 * 18 15 14 39 39 H 1.08001 * 120.01840 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.97801 * 180.22702 * 22 21 20 41 41 H 1.07995 * 119.97908 * 179.97438 * 25 23 22 42 42 H 1.08008 * 120.01721 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4427 0.0369 5 6 1.4965 2.1675 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7869 1.7115 2.4725 8 7 2.5386 0.6442 2.6315 9 14 1.1126 2.6097 3.9651 10 1 -0.3715 2.6089 3.9147 11 1 1.5657 1.9240 5.2020 12 1 1.6070 4.0100 3.9654 13 7 1.5914 2.1205 -1.2235 14 6 2.5290 1.8855 -2.3296 15 6 1.9671 2.4993 -3.6136 16 1 1.8310 3.5718 -3.4743 17 8 0.7088 1.8951 -3.9194 18 6 2.9441 2.2551 -4.7655 19 8 2.4768 2.9270 -5.9370 20 6 3.2349 2.8104 -7.0591 21 6 4.4072 2.0692 -7.0312 22 6 5.1741 1.9483 -8.1738 23 6 4.7786 2.5737 -9.3431 24 17 5.7472 2.4252 -10.7760 25 6 3.6123 3.3177 -9.3714 26 6 2.8402 3.4369 -8.2321 27 1 -0.3633 0.4252 0.9356 28 1 -0.3634 -1.0228 -0.0996 29 1 -0.3634 0.5977 -0.8360 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.7426 0.3231 3.5238 33 1 1.4618 3.1082 -1.0629 34 1 3.4889 2.3464 -2.0964 35 1 2.6651 0.8131 -2.4689 36 1 0.7545 0.9389 -4.0564 37 1 3.9279 2.6382 -4.4950 38 1 3.0125 1.1854 -4.9632 39 1 4.7181 1.5840 -6.1178 40 1 6.0849 1.3683 -8.1535 41 1 3.3054 3.8055 -10.2847 42 1 1.9301 4.0181 -8.2545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576765479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:25 Heat of formation + Delta-G solvation = -95.595356 kcal Electronic energy + Delta-G solvation = -23074.672750 eV Core-core repulsion = 19465.797812 eV Total energy + Delta-G solvation = -3608.874938 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25214 -39.35648 -38.36620 -37.34573 -36.93792 -34.39269 -32.77554 -32.24610 -31.32382 -30.17690 -28.28769 -26.03035 -24.93193 -23.94402 -23.08746 -22.39627 -20.92217 -19.33249 -18.46014 -17.85649 -17.59382 -17.32400 -16.86820 -16.49142 -16.11210 -15.71370 -15.36272 -15.21800 -15.07631 -14.59599 -14.52555 -14.26573 -14.09385 -13.87247 -13.55132 -13.20660 -13.03178 -12.79492 -12.70481 -12.63683 -12.45224 -12.35602 -11.97737 -11.89496 -11.74749 -11.63801 -11.55423 -11.32648 -10.88320 -10.75197 -10.51196 -10.15327 -9.15714 -8.94131 -8.09141 -6.20368 0.17476 0.20893 1.18295 1.42904 1.44544 1.51184 2.02030 2.43575 2.58396 3.19915 3.43839 3.58257 3.73346 3.82944 3.93404 4.02862 4.13203 4.17422 4.31410 4.40144 4.41510 4.53409 4.65629 4.76143 4.83686 4.90106 4.95682 4.98481 5.06661 5.20047 5.23657 5.33125 5.41475 5.54816 5.58919 5.73038 5.84353 5.93036 6.29986 6.31756 6.49677 6.79586 6.92150 7.05187 7.48214 8.95509 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.002050 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.366707 B =13652.202288 C =13785.101040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C 0.223 3.777 4 H -0.033 1.033 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.036 3.964 15 C 0.128 3.872 16 H 0.095 0.905 17 O -0.556 6.556 18 C 0.032 3.968 19 O -0.316 6.316 20 C 0.122 3.878 21 C -0.203 4.203 22 C -0.072 4.072 23 C -0.086 4.086 24 Cl -0.073 7.073 25 C -0.070 4.070 26 C -0.150 4.150 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.331 0.669 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.382 0.618 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 2.457 -23.583 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C 0.114 3.886 4 H -0.015 1.015 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.304 5.304 14 C -0.094 4.094 15 C 0.068 3.932 16 H 0.113 0.887 17 O -0.362 6.362 18 C -0.044 4.044 19 O -0.230 6.230 20 C 0.076 3.924 21 C -0.222 4.222 22 C -0.091 4.091 23 C -0.113 4.113 24 Cl -0.044 7.044 25 C -0.088 4.088 26 C -0.169 4.169 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.230 0.770 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.425 2.529 -23.647 24.190 hybrid contribution 1.126 0.149 1.345 1.760 sum 5.551 2.678 -22.303 23.139 Atomic orbital electron populations 1.21302 0.96219 0.98388 1.00587 1.21290 0.96108 0.97595 0.98475 1.18917 0.91077 0.92303 0.86279 1.01502 1.21434 1.31405 1.12012 0.91450 0.92658 1.25586 0.95416 0.95734 1.01437 1.69998 1.38367 1.24227 1.22860 0.85712 0.78833 0.78777 0.78911 1.19930 1.21244 1.19780 1.60444 1.47707 1.16026 1.06190 1.22489 0.94021 1.01061 0.91837 1.21711 0.83352 0.98494 0.89657 0.88661 1.86598 1.30344 1.26661 1.92567 1.23654 0.99014 0.98098 0.83650 1.86141 1.48718 1.70227 1.17866 1.19403 0.90637 0.95085 0.87280 1.21443 0.95905 1.04196 1.00624 1.21068 1.00065 0.97629 0.90323 1.20947 0.96066 1.05118 0.89178 1.98363 1.70767 1.97155 1.38109 1.21074 0.92086 0.96727 0.98935 1.20613 1.02644 1.03459 0.90160 0.95468 0.94789 0.92539 0.92713 0.95611 0.93060 0.85185 0.94963 0.90861 0.76975 0.89667 0.89798 0.83225 0.83172 0.82481 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.46 71.98 0.68 -3.98 16 2 C -0.10 -4.46 5.57 30.59 0.17 -4.29 16 3 C 0.22 10.63 2.30 44.17 0.10 10.73 16 4 H -0.03 -1.73 7.84 -2.39 -0.02 -1.75 16 5 C -0.52 -27.58 7.33 25.60 0.19 -27.39 16 6 H 0.06 2.89 7.60 -2.91 -0.02 2.86 16 7 C 0.02 0.94 5.30 84.66 0.45 1.39 16 8 N -0.92 -51.31 11.34 21.45 0.24 -51.07 16 9 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.67 -26.19 5.38 -495.44 -2.66 -28.85 16 14 C 0.04 1.09 5.12 86.31 0.44 1.53 16 15 C 0.13 3.21 3.50 30.60 0.11 3.32 16 16 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 17 O -0.56 -15.55 13.17 -144.36 -1.90 -17.45 16 18 C 0.03 0.62 4.38 71.98 0.31 0.93 16 19 O -0.32 -7.21 10.10 -88.07 -0.89 -8.09 16 20 C 0.12 2.44 6.69 22.50 0.15 2.59 16 21 C -0.20 -3.46 9.04 22.36 0.20 -3.26 16 22 C -0.07 -1.14 9.82 22.28 0.22 -0.92 16 23 C -0.09 -1.41 6.32 22.33 0.14 -1.27 16 24 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 25 C -0.07 -1.08 9.82 22.28 0.22 -0.86 16 26 C -0.15 -2.66 9.99 22.36 0.22 -2.44 16 27 H 0.03 1.28 7.37 -2.39 -0.02 1.26 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 2.36 7.50 -2.39 -0.02 2.34 16 30 H 0.05 2.89 6.13 -2.39 -0.01 2.88 16 31 H 0.03 1.07 7.43 -2.38 -0.02 1.05 16 32 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.33 13.02 8.25 -89.69 -0.74 12.28 16 34 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 2.15 7.40 -2.39 -0.02 2.13 16 36 H 0.38 8.37 9.05 -74.05 -0.67 7.70 16 37 H 0.09 1.44 7.65 -2.39 -0.02 1.42 16 38 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 39 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 40 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -61.06 361.52 -0.03 -61.09 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.37 Total: 24.61 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 3.61 Total: -23.91 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.42 Total: -79.92 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -2.79 Total: -25.55 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -61.06 -0.03 -61.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576765479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.506 kcal (2) G-P(sol) polarization free energy of solvation -61.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds