Wall clock time and date at job start Tue Mar 31 2020 11:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 H 1.08999 * 109.47076 * 179.82134 * 3 2 1 5 5 C 1.50696 * 109.47053 * 299.82303 * 3 2 1 6 6 H 1.08001 * 120.00434 * 120.00342 * 5 3 2 7 7 C 1.37883 * 120.00057 * 299.99579 * 5 3 2 8 8 N 1.31518 * 119.99701 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99918 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47122 * 60.00607 * 9 7 5 11 11 H 1.48501 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47291 * 300.00179 * 9 7 5 13 13 N 1.46896 * 109.47069 * 59.82218 * 3 2 1 14 14 C 1.46901 * 111.00458 * 85.85249 * 13 3 2 15 15 C 1.53001 * 109.47484 * 175.81213 * 14 13 3 16 16 H 1.08992 * 109.46971 * 60.00263 * 15 14 13 17 17 O 1.42904 * 109.46873 * 300.00207 * 15 14 13 18 18 C 1.52999 * 109.46773 * 180.02562 * 15 14 13 19 19 O 1.42904 * 109.46951 * 185.00290 * 18 15 14 20 20 C 1.35923 * 117.00003 * 179.97438 * 19 18 15 21 21 C 1.38704 * 120.06026 * 359.97438 * 20 19 18 22 22 C 1.38149 * 119.95494 * 180.02562 * 21 20 19 23 23 C 1.38281 * 120.08075 * 359.97438 * 22 21 20 24 24 C 1.38247 * 120.11487 * 0.02562 * 23 22 21 25 25 C 1.38256 * 120.04692 * 359.67520 * 24 23 22 26 26 Cl 1.73597 * 120.04440 * 180.32238 * 25 24 23 27 27 H 1.09001 * 109.46662 * 295.59441 * 1 2 3 28 28 H 1.09008 * 109.46958 * 175.60271 * 1 2 3 29 29 H 1.08990 * 109.47226 * 55.60090 * 1 2 3 30 30 H 1.09001 * 109.46902 * 120.00539 * 2 1 3 31 31 H 1.08996 * 109.46704 * 239.99983 * 2 1 3 32 32 H 0.96994 * 119.99392 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00152 * 209.81142 * 13 3 2 34 34 H 1.08998 * 109.46976 * 295.81767 * 14 13 3 35 35 H 1.09004 * 109.46501 * 55.81138 * 14 13 3 36 36 H 0.96704 * 113.99556 * 299.99695 * 17 15 14 37 37 H 1.09007 * 109.46778 * 304.99509 * 18 15 14 38 38 H 1.08997 * 109.47508 * 64.99712 * 18 15 14 39 39 H 1.07999 * 120.02357 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.95938 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.94388 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.97425 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1516 -1.2326 6 1 0.9201 3.0298 -1.1363 7 6 1.8781 1.6793 -2.4835 8 7 2.6342 0.6096 -2.6008 9 14 1.2593 2.5579 -4.0114 10 1 1.7537 3.9581 -4.0116 11 1 1.7575 1.8563 -5.2217 12 1 -0.2257 2.5572 -4.0155 13 7 1.5469 2.1362 1.1972 14 6 2.4381 1.9081 2.3426 15 6 1.9509 2.7277 3.5391 16 1 0.9379 2.4220 3.8006 17 8 1.9570 4.1158 3.1998 18 6 2.8795 2.4905 4.7317 19 8 2.3602 3.1627 5.8809 20 6 3.0709 3.0520 7.0342 21 6 4.2434 2.3114 7.0594 22 6 4.9638 2.1999 8.2329 23 6 4.5177 2.8261 9.3822 24 6 3.3495 3.5651 9.3606 25 6 2.6279 3.6852 8.1874 26 17 1.1654 4.6201 8.1584 27 1 -0.3633 0.4440 0.9269 28 1 -0.3633 -1.0247 -0.0788 29 1 -0.3633 0.5805 -0.8479 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.8708 0.2772 -3.4807 33 1 1.4298 3.1227 1.0211 34 1 2.4334 0.8492 2.6013 35 1 3.4512 2.2137 2.0810 36 1 2.8283 4.4572 2.9559 37 1 2.9444 1.4215 4.9346 38 1 3.8722 2.8776 4.5019 39 1 4.5930 1.8222 6.1622 40 1 5.8765 1.6228 8.2527 41 1 5.0823 2.7372 10.2985 42 1 3.0029 4.0530 10.2597 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584239502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:38 Heat of formation + Delta-G solvation = -96.088867 kcal Electronic energy + Delta-G solvation = -23336.382629 eV Core-core repulsion = 19727.486291 eV Total energy + Delta-G solvation = -3608.896339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25287 -39.40579 -38.24971 -37.32486 -37.19041 -34.38081 -32.75780 -31.87897 -31.50709 -30.31455 -28.31542 -26.05789 -24.94193 -23.76590 -23.16237 -22.39415 -20.94458 -19.37855 -18.47183 -17.86169 -17.62788 -17.14673 -16.94888 -16.52613 -16.20741 -15.67568 -15.51884 -15.14909 -15.03644 -14.86839 -14.63427 -14.12891 -14.01290 -13.85665 -13.48963 -13.05637 -12.84818 -12.81971 -12.68671 -12.49511 -12.45541 -12.32055 -12.05790 -11.96623 -11.88770 -11.74657 -11.59440 -11.33515 -10.99440 -10.77653 -10.52280 -9.90346 -9.20567 -8.99079 -8.10010 -6.21573 0.14266 0.32720 1.22212 1.42582 1.44083 1.51004 1.98606 2.43055 2.64580 3.18693 3.39334 3.50335 3.79755 3.83952 3.97723 4.07427 4.11391 4.21043 4.33597 4.35315 4.43382 4.48972 4.61532 4.77553 4.78209 4.79659 4.94794 5.06775 5.11969 5.26831 5.30304 5.40374 5.44599 5.56495 5.69863 5.71702 5.83033 5.89637 6.26444 6.29726 6.50084 6.75515 6.82849 7.03927 7.47164 8.94656 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002464 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.001774 B =11360.625283 C =11759.133277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.224 3.776 4 H -0.031 1.031 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.039 3.961 15 C 0.125 3.875 16 H 0.099 0.901 17 O -0.565 6.565 18 C 0.034 3.966 19 O -0.313 6.313 20 C 0.118 3.882 21 C -0.208 4.208 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.078 4.078 25 C -0.095 4.095 26 Cl -0.074 7.074 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.336 0.664 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.383 0.617 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 3.018 24.141 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.115 3.885 4 H -0.013 1.013 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.091 4.091 15 C 0.066 3.934 16 H 0.117 0.883 17 O -0.371 6.371 18 C -0.042 4.042 19 O -0.227 6.227 20 C 0.071 3.929 21 C -0.226 4.226 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.096 4.096 25 C -0.122 4.122 26 Cl -0.045 7.045 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.166 0.834 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.851 2.526 24.245 24.855 hybrid contribution 1.021 0.807 -1.638 2.092 sum 5.871 3.334 22.608 23.594 Atomic orbital electron populations 1.21321 0.96232 0.98314 1.00766 1.21334 0.96090 0.97754 0.98691 1.18924 0.90874 0.92064 0.86608 1.01345 1.21429 1.31454 1.11988 0.91516 0.92807 1.25580 0.95234 0.95646 1.01577 1.69994 1.37590 1.23776 1.24092 0.85712 0.78755 0.78744 0.79031 1.19791 1.21076 1.19933 1.60518 1.49013 1.16308 1.05373 1.22467 0.94368 1.00511 0.91752 1.21795 1.00159 0.81478 0.90003 0.88311 1.86630 1.36585 1.24032 1.89867 1.23630 0.98339 0.98249 0.83973 1.86197 1.49289 1.70488 1.16677 1.19063 0.92117 0.95840 0.85879 1.21539 0.95508 1.03764 1.01838 1.21476 0.99537 0.96851 0.91280 1.21433 0.96280 0.98478 1.00159 1.21241 0.94493 0.98148 0.95755 1.20552 0.93358 1.03675 0.94629 1.98365 1.35528 1.71812 1.98819 0.93056 0.94846 0.94761 0.95742 0.92352 0.92982 0.84540 0.90462 0.95307 0.76852 0.89345 0.89887 0.83396 0.82309 0.81939 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.52 71.98 0.69 -4.11 16 2 C -0.10 -4.75 5.59 30.60 0.17 -4.58 16 3 C 0.22 10.90 2.30 44.17 0.10 11.01 16 4 H -0.03 -1.67 7.72 -2.39 -0.02 -1.69 16 5 C -0.53 -28.08 7.26 25.60 0.19 -27.90 16 6 H 0.05 2.88 7.60 -2.91 -0.02 2.85 16 7 C 0.02 1.03 5.30 84.66 0.45 1.48 16 8 N -0.92 -51.63 11.32 21.45 0.24 -51.39 16 9 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.68 -27.51 5.64 -495.47 -2.80 -30.31 16 14 C 0.04 1.23 5.24 86.30 0.45 1.68 16 15 C 0.13 3.39 3.52 30.59 0.11 3.49 16 16 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 17 O -0.56 -16.37 12.57 -144.33 -1.81 -18.18 16 18 C 0.03 0.72 4.37 71.98 0.31 1.03 16 19 O -0.31 -8.06 9.56 -88.03 -0.84 -8.90 16 20 C 0.12 2.64 6.68 22.52 0.15 2.79 16 21 C -0.21 -3.52 9.04 22.36 0.20 -3.32 16 22 C -0.07 -0.91 10.04 22.26 0.22 -0.69 16 23 C -0.15 -1.70 10.04 22.28 0.22 -1.47 16 24 C -0.08 -1.21 9.83 22.28 0.22 -0.99 16 25 C -0.09 -2.07 6.33 22.41 0.14 -1.92 16 26 Cl -0.07 -1.77 28.50 -2.72 -0.08 -1.85 16 27 H 0.05 2.13 7.74 -2.39 -0.02 2.11 16 28 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.03 1.64 7.07 -2.39 -0.02 1.62 16 30 H 0.02 1.05 7.59 -2.39 -0.02 1.03 16 31 H 0.06 3.13 6.06 -2.39 -0.01 3.11 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.34 13.94 7.49 -89.70 -0.67 13.27 16 34 H 0.08 2.37 7.60 -2.39 -0.02 2.35 16 35 H 0.03 0.89 7.95 -2.38 -0.02 0.87 16 36 H 0.38 8.50 9.04 -74.05 -0.67 7.83 16 37 H 0.09 1.61 7.66 -2.38 -0.02 1.59 16 38 H 0.08 1.47 7.66 -2.39 -0.02 1.45 16 39 H 0.15 2.05 6.30 -2.91 -0.02 2.03 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -64.31 359.80 0.07 -64.25 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.30 Total: 24.62 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 3.63 Total: -23.49 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.55 Total: -81.69 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -2.66 Total: -27.08 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -64.31 0.07 -64.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584239502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.841 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds