Wall clock time and date at job start Tue Mar 31 2020 11:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46933 * 2 1 4 4 H 1.09004 * 109.47046 * 305.67749 * 3 2 1 5 5 C 1.50700 * 109.46766 * 185.67514 * 3 2 1 6 6 H 1.07991 * 120.00484 * 245.38937 * 5 3 2 7 7 C 1.37883 * 119.99711 * 65.39453 * 5 3 2 8 8 N 1.31518 * 119.99733 * 197.20206 * 7 5 3 9 9 Si 1.86802 * 120.00083 * 17.20293 * 7 5 3 10 10 H 1.48496 * 109.46949 * 86.78473 * 9 7 5 11 11 H 1.48500 * 109.46636 * 206.78260 * 9 7 5 12 12 H 1.48496 * 109.46962 * 326.78318 * 9 7 5 13 13 N 1.46899 * 109.47102 * 65.67957 * 3 2 1 14 14 C 1.46900 * 110.99871 * 251.29443 * 13 3 2 15 15 C 1.52994 * 109.47237 * 182.97497 * 14 13 3 16 16 H 1.09006 * 109.46868 * 304.99790 * 15 14 13 17 17 O 1.42897 * 109.47218 * 64.99902 * 15 14 13 18 18 C 1.53001 * 109.47308 * 185.00202 * 15 14 13 19 19 O 1.42906 * 109.47195 * 175.00012 * 18 15 14 20 20 C 1.35925 * 116.99630 * 179.97438 * 19 18 15 21 21 C 1.38702 * 120.06172 * 0.02562 * 20 19 18 22 22 C 1.38152 * 119.95538 * 180.02562 * 21 20 19 23 23 C 1.38278 * 120.07849 * 359.97438 * 22 21 20 24 24 C 1.38241 * 120.11680 * 0.02562 * 23 22 21 25 25 C 1.38255 * 120.04758 * 359.68187 * 24 23 22 26 26 Cl 1.73603 * 120.04562 * 180.31777 * 25 24 23 27 27 H 1.09002 * 109.47403 * 185.51696 * 1 2 3 28 28 H 1.09002 * 109.47282 * 65.51631 * 1 2 3 29 29 H 1.09004 * 109.47351 * 305.51306 * 1 2 3 30 30 H 1.09000 * 109.47107 * 120.00202 * 2 1 3 31 31 H 1.09002 * 109.46656 * 239.99933 * 2 1 3 32 32 H 0.96996 * 119.99749 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00045 * 127.34141 * 13 3 2 34 34 H 1.09003 * 109.47066 * 302.97701 * 14 13 3 35 35 H 1.09003 * 109.46939 * 62.97225 * 14 13 3 36 36 H 0.96700 * 113.99830 * 60.00070 * 17 15 14 37 37 H 1.08998 * 109.46545 * 294.99687 * 18 15 14 38 38 H 1.08995 * 109.47419 * 54.99808 * 18 15 14 39 39 H 1.08001 * 120.02037 * 0.02562 * 21 20 19 40 40 H 1.08006 * 119.96130 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.94146 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.97731 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5959 1.9849 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1579 1.8069 0.6680 7 6 4.1247 0.9847 -1.3015 8 7 5.4007 0.6661 -1.3140 9 14 3.1041 0.8140 -2.8568 10 1 3.0947 2.1070 -3.5870 11 1 3.6934 -0.2391 -3.7223 12 1 1.7132 0.4384 -2.4973 13 7 1.6654 2.0943 1.2621 14 6 0.6102 3.0933 1.0458 15 6 0.2997 3.8012 2.3660 16 1 0.0479 3.0604 3.1250 17 8 1.4442 4.5455 2.7881 18 6 -0.8828 4.7519 2.1692 19 8 -1.2473 5.3254 3.4264 20 6 -2.2880 6.1998 3.4271 21 6 -2.9449 6.4990 2.2427 22 6 -4.0020 7.3885 2.2459 23 6 -4.4063 7.9802 3.4285 24 6 -3.7538 7.6842 4.6107 25 6 -2.6992 6.7902 4.6143 26 17 -1.8852 6.4122 6.1004 27 1 -0.3634 -1.0229 0.0988 28 1 -0.3634 0.4259 -0.9353 29 1 -0.3634 0.5970 0.8365 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 5.8118 0.3428 -2.1308 33 1 2.4701 2.5090 1.7076 34 1 0.9477 3.8250 0.3117 35 1 -0.2889 2.5983 0.6786 36 1 1.7255 5.2244 2.1596 37 1 -0.6002 5.5446 1.4765 38 1 -1.7297 4.1991 1.7628 39 1 -2.6301 6.0371 1.3186 40 1 -4.5133 7.6219 1.3236 41 1 -5.2327 8.6755 3.4284 42 1 -4.0712 8.1480 5.5330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584239503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:41 Heat of formation + Delta-G solvation = -73.144282 kcal Electronic energy + Delta-G solvation = -23427.258329 eV Core-core repulsion = 19819.356942 eV Total energy + Delta-G solvation = -3607.901387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49859 -38.43190 -37.21472 -36.52612 -35.80103 -32.53870 -31.66599 -31.18956 -30.67010 -29.43279 -27.35445 -24.77332 -23.04852 -22.60738 -22.18347 -21.39681 -19.59615 -18.63576 -17.32100 -16.78562 -16.68005 -16.46222 -15.67976 -15.45434 -14.99064 -14.89530 -14.24084 -14.09021 -13.80264 -13.62954 -13.27689 -13.09354 -12.86867 -12.64544 -12.25083 -12.13981 -11.73785 -11.68274 -11.65543 -11.41625 -11.27400 -11.01099 -10.91000 -10.82456 -10.79657 -10.42205 -9.97210 -9.82697 -9.43704 -9.24523 -9.23263 -8.48334 -8.45412 -7.52075 -6.18855 -4.13776 0.78954 0.98603 1.98888 2.79942 3.21940 3.28058 3.32021 3.33958 4.33313 4.35158 4.41300 4.46092 4.62825 4.72657 4.87857 4.89361 5.05145 5.10564 5.14354 5.25022 5.35078 5.36865 5.60320 5.73649 5.83708 5.89468 6.02836 6.04410 6.05740 6.18096 6.24808 6.28616 6.60197 6.73917 7.00150 7.00884 7.04933 7.41213 7.60209 7.73449 7.91421 8.31095 8.54825 8.91313 9.47329 10.94010 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.002666 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.535785 B =10500.624906 C =10947.147728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.192 3.808 4 H 0.006 0.994 5 C -0.540 4.540 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.886 5.886 9 Si 0.863 3.137 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.253 1.253 13 N -0.675 5.675 14 C 0.033 3.967 15 C 0.112 3.888 16 H 0.116 0.884 17 O -0.547 6.547 18 C 0.026 3.974 19 O -0.289 6.289 20 C 0.144 3.856 21 C -0.202 4.202 22 C -0.075 4.075 23 C -0.152 4.152 24 C -0.074 4.074 25 C -0.073 4.073 26 Cl -0.055 7.055 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.348 0.652 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.371 0.629 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.566 14.103 7.449 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.024 0.976 5 C -0.578 4.578 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.523 5.523 9 Si 0.690 3.310 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.177 1.177 13 N -0.308 5.308 14 C -0.098 4.098 15 C 0.053 3.947 16 H 0.134 0.866 17 O -0.351 6.351 18 C -0.050 4.050 19 O -0.201 6.201 20 C 0.097 3.903 21 C -0.221 4.221 22 C -0.093 4.093 23 C -0.171 4.171 24 C -0.093 4.093 25 C -0.100 4.100 26 Cl -0.026 7.026 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.218 0.782 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.670 13.013 8.330 25.807 hybrid contribution 0.065 0.902 -2.142 2.325 sum -20.605 13.915 6.189 25.622 Atomic orbital electron populations 1.21853 0.98682 0.99797 1.00265 1.21839 0.92656 0.99295 1.00887 1.19451 0.95318 0.90896 0.85991 0.97605 1.21311 0.89547 1.44226 1.02688 0.90588 1.24911 0.94756 0.93857 0.98898 1.70004 1.12111 1.42224 1.27950 0.87188 0.82113 0.77949 0.83745 1.20684 1.21345 1.17682 1.60550 1.13720 1.30106 1.26398 1.22575 0.98226 0.94846 0.94117 1.22052 0.82727 0.91482 0.98477 0.86602 1.86675 1.46801 1.52586 1.49039 1.23770 0.99551 0.97285 0.84387 1.86268 1.45502 1.55211 1.33155 1.18801 0.88409 0.90528 0.92607 1.21299 0.99947 1.03710 0.97132 1.21065 0.95164 0.94583 0.98516 1.21012 1.01642 1.02465 0.91951 1.20935 0.93342 0.95527 0.99472 1.20253 0.99638 1.03475 0.86635 1.98383 1.78582 1.93686 1.31923 0.94558 0.94643 0.92562 0.92275 0.93157 0.92581 0.83179 0.95359 0.90763 0.78230 0.91526 0.90834 0.84555 0.85186 0.85055 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.49 37.16 0.35 -2.29 16 2 C -0.11 -2.34 4.95 -26.73 -0.13 -2.47 16 3 C 0.19 4.33 1.74 -68.86 -0.12 4.21 16 4 H 0.01 0.14 6.16 -51.93 -0.32 -0.18 16 5 C -0.54 -14.62 9.00 -34.44 -0.31 -14.93 16 6 H 0.08 2.24 7.62 -52.49 -0.40 1.84 16 7 C 0.08 2.22 5.30 -17.82 -0.09 2.13 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 9 Si 0.86 20.64 25.86 -169.99 -4.40 16.24 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.25 -5.69 5.65 56.52 0.32 -5.37 16 13 N -0.67 -13.08 5.98 -107.95 -0.65 -13.72 16 14 C 0.03 0.50 4.76 -3.83 -0.02 0.48 16 15 C 0.11 1.49 3.48 -26.73 -0.09 1.40 16 16 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 17 O -0.55 -7.92 12.78 -40.08 -0.51 -8.43 16 18 C 0.03 0.28 4.37 37.16 0.16 0.44 16 19 O -0.29 -3.68 9.56 -24.35 -0.23 -3.91 16 20 C 0.14 1.64 6.68 -39.19 -0.26 1.38 16 21 C -0.20 -1.86 9.04 -39.44 -0.36 -2.21 16 22 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 23 C -0.15 -1.10 10.04 -39.57 -0.40 -1.50 16 24 C -0.07 -0.63 9.83 -39.57 -0.39 -1.02 16 25 C -0.07 -0.80 6.33 -39.36 -0.25 -1.05 16 26 Cl -0.05 -0.64 28.51 -51.86 -1.48 -2.12 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.94 6.28 -51.93 -0.33 0.61 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.15 5.17 -51.93 -0.27 0.88 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.35 7.17 7.33 -39.29 -0.29 6.89 16 34 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 1.06 6.64 -51.93 -0.34 0.71 16 36 H 0.37 4.19 9.05 45.56 0.41 4.60 16 37 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 38 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 39 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 40 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -31.05 354.55 -8.71 -39.76 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.26 Total: 8.93 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.30 Total: -16.40 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.13 Total: -39.42 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.75 Total: -12.34 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.40 Total: 16.24 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.05 -8.71 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584239503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.380 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds