Wall clock time and date at job start Tue Mar 31 2020 11:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46933 * 2 1 4 4 H 1.09004 * 109.47046 * 305.67749 * 3 2 1 5 5 C 1.50700 * 109.46766 * 185.67514 * 3 2 1 6 6 H 1.07991 * 120.00484 * 245.38937 * 5 3 2 7 7 C 1.37883 * 119.99711 * 65.39453 * 5 3 2 8 8 N 1.31518 * 119.99733 * 197.20206 * 7 5 3 9 9 Si 1.86802 * 120.00083 * 17.20293 * 7 5 3 10 10 H 1.48496 * 109.46949 * 86.78473 * 9 7 5 11 11 H 1.48500 * 109.46636 * 206.78260 * 9 7 5 12 12 H 1.48496 * 109.46962 * 326.78318 * 9 7 5 13 13 N 1.46899 * 109.47102 * 65.67957 * 3 2 1 14 14 C 1.46900 * 110.99871 * 251.29443 * 13 3 2 15 15 C 1.52994 * 109.47237 * 182.97497 * 14 13 3 16 16 H 1.09006 * 109.46868 * 304.99790 * 15 14 13 17 17 O 1.42897 * 109.47218 * 64.99902 * 15 14 13 18 18 C 1.53001 * 109.47308 * 185.00202 * 15 14 13 19 19 O 1.42906 * 109.47195 * 175.00012 * 18 15 14 20 20 C 1.35925 * 116.99630 * 179.97438 * 19 18 15 21 21 C 1.38702 * 120.06172 * 0.02562 * 20 19 18 22 22 C 1.38152 * 119.95538 * 180.02562 * 21 20 19 23 23 C 1.38278 * 120.07849 * 359.97438 * 22 21 20 24 24 C 1.38241 * 120.11680 * 0.02562 * 23 22 21 25 25 C 1.38255 * 120.04758 * 359.68187 * 24 23 22 26 26 Cl 1.73603 * 120.04562 * 180.31777 * 25 24 23 27 27 H 1.09002 * 109.47403 * 185.51696 * 1 2 3 28 28 H 1.09002 * 109.47282 * 65.51631 * 1 2 3 29 29 H 1.09004 * 109.47351 * 305.51306 * 1 2 3 30 30 H 1.09000 * 109.47107 * 120.00202 * 2 1 3 31 31 H 1.09002 * 109.46656 * 239.99933 * 2 1 3 32 32 H 0.96996 * 119.99749 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00045 * 127.34141 * 13 3 2 34 34 H 1.09003 * 109.47066 * 302.97701 * 14 13 3 35 35 H 1.09003 * 109.46939 * 62.97225 * 14 13 3 36 36 H 0.96700 * 113.99830 * 60.00070 * 17 15 14 37 37 H 1.08998 * 109.46545 * 294.99687 * 18 15 14 38 38 H 1.08995 * 109.47419 * 54.99808 * 18 15 14 39 39 H 1.08001 * 120.02037 * 0.02562 * 21 20 19 40 40 H 1.08006 * 119.96130 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.94146 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.97731 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5959 1.9849 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1579 1.8069 0.6680 7 6 4.1247 0.9847 -1.3015 8 7 5.4007 0.6661 -1.3140 9 14 3.1041 0.8140 -2.8568 10 1 3.0947 2.1070 -3.5870 11 1 3.6934 -0.2391 -3.7223 12 1 1.7132 0.4384 -2.4973 13 7 1.6654 2.0943 1.2621 14 6 0.6102 3.0933 1.0458 15 6 0.2997 3.8012 2.3660 16 1 0.0479 3.0604 3.1250 17 8 1.4442 4.5455 2.7881 18 6 -0.8828 4.7519 2.1692 19 8 -1.2473 5.3254 3.4264 20 6 -2.2880 6.1998 3.4271 21 6 -2.9449 6.4990 2.2427 22 6 -4.0020 7.3885 2.2459 23 6 -4.4063 7.9802 3.4285 24 6 -3.7538 7.6842 4.6107 25 6 -2.6992 6.7902 4.6143 26 17 -1.8852 6.4122 6.1004 27 1 -0.3634 -1.0229 0.0988 28 1 -0.3634 0.4259 -0.9353 29 1 -0.3634 0.5970 0.8365 30 1 1.8933 -0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 5.8118 0.3428 -2.1308 33 1 2.4701 2.5090 1.7076 34 1 0.9477 3.8250 0.3117 35 1 -0.2889 2.5983 0.6786 36 1 1.7255 5.2244 2.1596 37 1 -0.6002 5.5446 1.4765 38 1 -1.7297 4.1991 1.7628 39 1 -2.6301 6.0371 1.3186 40 1 -4.5133 7.6219 1.3236 41 1 -5.2327 8.6755 3.4284 42 1 -4.0712 8.1480 5.5330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584239503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:41 Heat of formation + Delta-G solvation = -95.604579 kcal Electronic energy + Delta-G solvation = -23428.232280 eV Core-core repulsion = 19819.356942 eV Total energy + Delta-G solvation = -3608.875338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24579 -39.42732 -38.29002 -37.32673 -37.21250 -34.43669 -33.18389 -31.90551 -31.55991 -30.45405 -28.93861 -26.02603 -24.28200 -23.67568 -23.08996 -22.44981 -21.31243 -19.47035 -19.00826 -17.90074 -17.63722 -17.16503 -17.13348 -16.53248 -16.05781 -15.78405 -15.64564 -15.09790 -14.97295 -14.83011 -14.68705 -14.37145 -14.04101 -13.89262 -13.66290 -13.33688 -12.92690 -12.83958 -12.67262 -12.58696 -12.48942 -12.37288 -12.18632 -11.99183 -11.82893 -11.71027 -11.60306 -11.36781 -11.14882 -10.95378 -10.53512 -9.89774 -9.19997 -9.08801 -8.33926 -6.33326 0.14820 0.33380 1.22780 1.34034 1.36655 1.47243 1.99773 2.34031 2.65192 2.99972 3.37490 3.48971 3.79210 3.83092 3.98477 4.06129 4.10395 4.21031 4.34315 4.35997 4.41914 4.49073 4.49218 4.57215 4.64703 4.74802 4.78792 4.89493 5.07659 5.12446 5.23419 5.27326 5.32572 5.43956 5.45116 5.56264 5.70601 5.81861 6.01970 6.28016 6.46640 6.66742 6.78266 6.87562 7.32210 8.82728 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.002666 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.535785 B =10500.624906 C =10947.147728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.199 3.801 4 H 0.013 0.987 5 C -0.545 4.545 6 H 0.033 0.967 7 C 0.021 3.979 8 N -0.939 5.939 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.226 1.226 13 N -0.680 5.680 14 C 0.035 3.965 15 C 0.121 3.879 16 H 0.100 0.900 17 O -0.569 6.569 18 C 0.033 3.967 19 O -0.314 6.314 20 C 0.118 3.882 21 C -0.207 4.207 22 C -0.073 4.073 23 C -0.146 4.146 24 C -0.079 4.079 25 C -0.096 4.096 26 Cl -0.075 7.075 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.266 0.734 33 H 0.337 0.663 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.383 0.617 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.419 15.295 5.818 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.089 3.911 4 H 0.031 0.969 5 C -0.583 4.583 6 H 0.051 0.949 7 C -0.178 4.178 8 N -0.578 5.578 9 Si 0.753 3.247 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.148 1.148 13 N -0.311 5.311 14 C -0.095 4.095 15 C 0.061 3.939 16 H 0.117 0.883 17 O -0.375 6.375 18 C -0.043 4.043 19 O -0.228 6.228 20 C 0.072 3.928 21 C -0.225 4.225 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.097 4.097 25 C -0.123 4.123 26 Cl -0.046 7.046 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.232 0.768 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.169 0.831 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.560 14.224 6.710 29.164 hybrid contribution 1.270 0.616 -1.539 2.088 sum -23.290 14.839 5.171 28.096 Atomic orbital electron populations 1.21752 0.95108 1.01452 1.01364 1.21771 0.95832 0.97904 0.99430 1.19311 0.92052 0.92163 0.87530 0.96922 1.21650 0.92080 1.43147 1.01404 0.94918 1.25822 0.95866 0.93601 1.02528 1.70151 1.14419 1.44277 1.28957 0.86115 0.81580 0.78066 0.78896 1.19852 1.21589 1.14838 1.60519 1.14013 1.31848 1.24706 1.22649 0.97225 0.94271 0.95357 1.21858 0.83491 0.91721 0.96816 0.88257 1.86638 1.47654 1.53209 1.50040 1.23650 0.98915 0.97415 0.84287 1.86204 1.46518 1.56056 1.34004 1.19056 0.88891 0.91255 0.93644 1.21548 1.00162 1.04037 0.96778 1.21482 0.94378 0.93407 0.99862 1.21429 1.01707 1.02089 0.91193 1.21232 0.92629 0.94892 1.00954 1.20564 1.00803 1.04959 0.85978 1.98367 1.79180 1.93954 1.33147 0.92724 0.93386 0.91571 0.94037 0.94502 0.92545 0.84445 0.94724 0.88991 0.76820 0.89812 0.88919 0.83140 0.82249 0.82017 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.49 71.98 0.68 -3.79 16 2 C -0.11 -4.63 4.95 30.59 0.15 -4.48 16 3 C 0.20 8.82 1.74 44.17 0.08 8.89 16 4 H 0.01 0.56 6.16 -2.38 -0.01 0.55 16 5 C -0.54 -30.31 9.00 25.60 0.23 -30.08 16 6 H 0.03 2.04 7.62 -2.92 -0.02 2.02 16 7 C 0.02 1.18 5.30 84.66 0.45 1.63 16 8 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 9 Si 0.93 42.22 25.86 68.60 1.77 44.00 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.23 -9.19 5.65 99.48 0.56 -8.63 16 13 N -0.68 -26.10 5.98 -495.44 -2.96 -29.06 16 14 C 0.03 0.99 4.76 86.30 0.41 1.40 16 15 C 0.12 3.08 3.48 30.59 0.11 3.19 16 16 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 17 O -0.57 -16.52 12.78 -144.34 -1.84 -18.36 16 18 C 0.03 0.64 4.37 71.98 0.31 0.96 16 19 O -0.31 -7.78 9.56 -88.07 -0.84 -8.62 16 20 C 0.12 2.54 6.68 22.52 0.15 2.70 16 21 C -0.21 -3.23 9.04 22.36 0.20 -3.03 16 22 C -0.07 -0.84 10.04 22.26 0.22 -0.62 16 23 C -0.15 -1.61 10.04 22.28 0.22 -1.39 16 24 C -0.08 -1.19 9.83 22.27 0.22 -0.97 16 25 C -0.10 -2.03 6.33 22.41 0.14 -1.89 16 26 Cl -0.08 -1.78 28.51 -2.72 -0.08 -1.86 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.98 6.28 -2.38 -0.01 1.97 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.61 5.17 -2.39 -0.01 1.60 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.34 14.30 7.33 -89.69 -0.66 13.64 16 34 H 0.03 0.96 8.08 -2.39 -0.02 0.94 16 35 H 0.09 2.30 6.64 -2.39 -0.02 2.28 16 36 H 0.38 8.58 9.05 -74.06 -0.67 7.91 16 37 H 0.08 1.34 7.66 -2.39 -0.02 1.32 16 38 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16 39 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 40 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 42 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -70.09 354.55 -0.49 -70.58 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.42 Total: 28.50 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 3.58 Total: -27.48 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.66 Total: -86.76 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -2.69 Total: -26.98 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.77 Total: 44.00 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -70.09 -0.49 -70.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584239503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.021 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds