Wall clock time and date at job start Tue Mar 31 2020 10:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48506 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47440 * 299.99933 * 3 2 1 6 6 H 1.48502 * 109.47423 * 60.00381 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46574 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46619 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99871 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47123 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47398 * 59.99875 * 14 13 12 16 16 O 1.42903 * 109.46726 * 299.99631 * 14 13 12 17 17 C 1.53002 * 109.47233 * 180.02562 * 14 13 12 18 18 O 1.42894 * 109.47240 * 184.99627 * 17 14 13 19 19 C 1.35930 * 116.99785 * 179.97438 * 18 17 14 20 20 C 1.38701 * 120.06262 * 0.02562 * 19 18 17 21 21 C 1.38145 * 119.96063 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.07472 * 359.97438 * 21 20 19 23 23 C 1.38246 * 120.12169 * 0.02748 * 22 21 20 24 24 C 1.38263 * 120.03738 * 359.67153 * 23 22 21 25 25 Cl 1.73599 * 120.03664 * 180.31735 * 24 23 22 26 26 H 0.97006 * 119.99780 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47142 * 59.99812 * 9 7 2 28 28 H 1.09001 * 109.47011 * 299.99869 * 9 7 2 29 29 H 1.09000 * 109.47203 * 60.00013 * 10 9 7 30 30 H 1.08997 * 109.47642 * 299.99561 * 10 9 7 31 31 H 1.09000 * 109.47261 * 60.00152 * 11 10 9 32 32 H 1.08993 * 109.47436 * 299.99686 * 11 10 9 33 33 H 1.00906 * 111.00466 * 56.05044 * 12 11 10 34 34 H 1.08992 * 109.47078 * 59.99994 * 13 12 11 35 35 H 1.09004 * 109.46829 * 299.99640 * 13 12 11 36 36 H 0.96700 * 114.00234 * 300.00043 * 16 14 13 37 37 H 1.09008 * 109.46873 * 304.99791 * 17 14 13 38 38 H 1.08997 * 109.47047 * 64.99480 * 17 14 13 39 39 H 1.08002 * 120.02054 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.96744 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.94349 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.98017 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4800 -4.9871 -0.0033 12 7 2.4346 -6.1036 -0.0037 13 6 1.7343 -7.3950 -0.0048 14 6 2.7591 -8.5310 -0.0045 15 1 3.3834 -8.4570 0.8860 16 8 3.5792 -8.4329 -1.1707 17 6 2.0297 -9.8760 -0.0063 18 8 2.9823 -10.9346 0.1112 19 6 2.4957 -12.2037 0.1258 20 6 1.1300 -12.4254 0.0284 21 6 0.6378 -13.7161 0.0428 22 6 1.5052 -14.7873 0.1538 23 6 2.8670 -14.5701 0.2511 24 6 3.3654 -13.2806 0.2309 25 17 5.0761 -13.0082 0.3448 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 2.8718 -3.6051 0.8873 30 1 2.8718 -3.6037 -0.8927 31 1 0.8531 -5.0442 -0.8931 32 1 0.8537 -5.0454 0.8868 33 1 3.0695 -6.0370 0.7778 34 1 1.1098 -7.4688 -0.8950 35 1 1.1091 -7.4700 0.8850 36 1 3.0891 -8.4910 -2.0023 37 1 1.3374 -9.9150 0.8348 38 1 1.4757 -9.9876 -0.9384 39 1 0.4518 -11.5895 -0.0596 40 1 -0.4256 -13.8889 -0.0326 41 1 1.1181 -15.7956 0.1653 42 1 3.5424 -15.4084 0.3381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591734605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:59 Heat of formation + Delta-G solvation = -84.456002 kcal Electronic energy + Delta-G solvation = -22235.117995 eV Core-core repulsion = 18626.726095 eV Total energy + Delta-G solvation = -3608.391900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66527 -38.61291 -37.34379 -36.65525 -35.72785 -33.45933 -31.75989 -31.29607 -30.75910 -29.55224 -26.84228 -24.88252 -23.23525 -22.70833 -22.08819 -21.75411 -20.09847 -18.77753 -17.29992 -16.98945 -16.61657 -16.33424 -15.95214 -15.57792 -15.20053 -14.79050 -14.71008 -14.46058 -14.32592 -13.82431 -13.57875 -13.48381 -13.08919 -12.57715 -12.36809 -12.11536 -11.86397 -11.79852 -11.65838 -11.45515 -11.42333 -11.15537 -11.01520 -10.86150 -10.59587 -10.52976 -10.19483 -9.70820 -9.37274 -9.34248 -9.04465 -8.63051 -8.34654 -8.23427 -5.99634 -4.01462 0.66320 0.85075 1.85855 2.58084 3.15144 3.31900 3.39283 3.44265 4.02579 4.19839 4.30720 4.36953 4.47500 4.54417 4.59761 4.73651 4.77935 4.79580 4.93506 5.02489 5.07068 5.23155 5.36427 5.42337 5.59999 5.69635 5.71390 5.76798 5.87284 5.92293 6.14493 6.27917 6.69105 6.71619 6.84423 7.12409 7.24592 7.48809 7.60673 7.68645 7.82709 8.00806 8.44353 9.05985 9.62680 11.11867 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.034731 B = 0.001743 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.008615 B =16056.198523 C =16718.904117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.680 5.680 13 C 0.030 3.970 14 C 0.115 3.885 15 H 0.107 0.893 16 O -0.536 6.536 17 C 0.026 3.974 18 O -0.290 6.290 19 C 0.142 3.858 20 C -0.201 4.201 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.074 4.074 24 C -0.072 4.072 25 Cl -0.054 7.054 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.341 0.659 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.373 0.627 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -32.839 0.591 32.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.311 5.311 13 C -0.100 4.100 14 C 0.055 3.945 15 H 0.125 0.875 16 O -0.340 6.340 17 C -0.050 4.050 18 O -0.202 6.202 19 C 0.095 3.905 20 C -0.220 4.220 21 C -0.093 4.093 22 C -0.169 4.169 23 C -0.092 4.092 24 C -0.099 4.099 25 Cl -0.025 7.025 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.220 0.780 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.075 -32.536 0.374 32.604 hybrid contribution -0.678 0.893 0.576 1.260 sum 1.397 -31.643 0.950 31.688 Atomic orbital electron populations 1.69977 1.06069 1.26443 1.51174 1.25037 0.94865 0.99315 0.95384 0.86531 0.80175 0.83735 0.77534 1.19692 1.21015 1.21062 1.21305 0.93149 0.91025 1.50156 0.92556 1.19074 0.94015 0.91437 0.97083 1.21626 0.99193 0.92796 1.00915 1.22158 0.94036 0.90830 0.99845 1.60409 1.19974 1.00447 1.50270 1.22512 0.95492 0.90542 1.01476 1.21883 0.92636 0.88882 0.91099 0.87518 1.86679 1.36393 1.95792 1.15094 1.23718 0.92067 0.87090 1.02174 1.86250 1.35422 1.11379 1.87167 1.18770 0.91512 0.84575 0.95684 1.21281 0.93341 0.99010 1.08396 1.21075 1.00272 0.91725 0.96233 1.21041 0.92446 0.99614 1.03750 1.20959 0.96090 0.94392 0.97795 1.20255 0.85537 0.92736 1.11366 1.98386 1.10679 1.96816 1.96639 0.93111 0.96590 0.96828 0.93579 0.92400 0.91483 0.95783 0.84139 0.90523 0.94425 0.78045 0.90909 0.91255 0.84583 0.85096 0.84955 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 11 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 12 N -0.68 -9.52 6.37 -113.78 -0.72 -10.25 16 13 C 0.03 0.31 5.35 -3.82 -0.02 0.29 16 14 C 0.12 1.12 3.46 -26.73 -0.09 1.03 16 15 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 16 O -0.54 -6.26 13.17 -40.11 -0.53 -6.79 16 17 C 0.03 0.20 4.37 37.16 0.16 0.37 16 18 O -0.29 -3.04 9.56 -24.40 -0.23 -3.28 16 19 C 0.14 1.36 6.68 -39.20 -0.26 1.09 16 20 C -0.20 -1.49 9.04 -39.44 -0.36 -1.85 16 21 C -0.07 -0.46 10.04 -39.60 -0.40 -0.85 16 22 C -0.15 -0.89 10.04 -39.56 -0.40 -1.29 16 23 C -0.07 -0.53 9.83 -39.57 -0.39 -0.92 16 24 C -0.07 -0.68 6.33 -39.36 -0.25 -0.93 16 25 Cl -0.05 -0.55 28.50 -51.86 -1.48 -2.03 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.34 4.62 8.73 -39.29 -0.34 4.28 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.37 3.19 9.04 45.56 0.41 3.60 16 37 H 0.07 0.47 7.66 -51.92 -0.40 0.07 16 38 H 0.07 0.44 7.66 -51.93 -0.40 0.05 16 39 H 0.14 0.77 6.30 -52.49 -0.33 0.44 16 40 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -33.10 370.43 -10.06 -43.16 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.67 Total: 0.87 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.72 Total: -17.72 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.01 Total: -36.64 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.76 Total: -10.07 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.10 -10.06 -43.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591734605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.301 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds