Wall clock time and date at job start Tue Mar 31 2020 10:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48506 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47440 * 299.99933 * 3 2 1 6 6 H 1.48502 * 109.47423 * 60.00381 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46574 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46619 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99871 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47123 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47398 * 59.99875 * 14 13 12 16 16 O 1.42903 * 109.46726 * 299.99631 * 14 13 12 17 17 C 1.53002 * 109.47233 * 180.02562 * 14 13 12 18 18 O 1.42894 * 109.47240 * 184.99627 * 17 14 13 19 19 C 1.35930 * 116.99785 * 179.97438 * 18 17 14 20 20 C 1.38701 * 120.06262 * 0.02562 * 19 18 17 21 21 C 1.38145 * 119.96063 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.07472 * 359.97438 * 21 20 19 23 23 C 1.38246 * 120.12169 * 0.02748 * 22 21 20 24 24 C 1.38263 * 120.03738 * 359.67153 * 23 22 21 25 25 Cl 1.73599 * 120.03664 * 180.31735 * 24 23 22 26 26 H 0.97006 * 119.99780 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47142 * 59.99812 * 9 7 2 28 28 H 1.09001 * 109.47011 * 299.99869 * 9 7 2 29 29 H 1.09000 * 109.47203 * 60.00013 * 10 9 7 30 30 H 1.08997 * 109.47642 * 299.99561 * 10 9 7 31 31 H 1.09000 * 109.47261 * 60.00152 * 11 10 9 32 32 H 1.08993 * 109.47436 * 299.99686 * 11 10 9 33 33 H 1.00906 * 111.00466 * 56.05044 * 12 11 10 34 34 H 1.08992 * 109.47078 * 59.99994 * 13 12 11 35 35 H 1.09004 * 109.46829 * 299.99640 * 13 12 11 36 36 H 0.96700 * 114.00234 * 300.00043 * 16 14 13 37 37 H 1.09008 * 109.46873 * 304.99791 * 17 14 13 38 38 H 1.08997 * 109.47047 * 64.99480 * 17 14 13 39 39 H 1.08002 * 120.02054 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.96744 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.94349 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.98017 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4800 -4.9871 -0.0033 12 7 2.4346 -6.1036 -0.0037 13 6 1.7343 -7.3950 -0.0048 14 6 2.7591 -8.5310 -0.0045 15 1 3.3834 -8.4570 0.8860 16 8 3.5792 -8.4329 -1.1707 17 6 2.0297 -9.8760 -0.0063 18 8 2.9823 -10.9346 0.1112 19 6 2.4957 -12.2037 0.1258 20 6 1.1300 -12.4254 0.0284 21 6 0.6378 -13.7161 0.0428 22 6 1.5052 -14.7873 0.1538 23 6 2.8670 -14.5701 0.2511 24 6 3.3654 -13.2806 0.2309 25 17 5.0761 -13.0082 0.3448 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 2.8718 -3.6051 0.8873 30 1 2.8718 -3.6037 -0.8927 31 1 0.8531 -5.0442 -0.8931 32 1 0.8537 -5.0454 0.8868 33 1 3.0695 -6.0370 0.7778 34 1 1.1098 -7.4688 -0.8950 35 1 1.1091 -7.4700 0.8850 36 1 3.0891 -8.4910 -2.0023 37 1 1.3374 -9.9150 0.8348 38 1 1.4757 -9.9876 -0.9384 39 1 0.4518 -11.5895 -0.0596 40 1 -0.4256 -13.8889 -0.0326 41 1 1.1181 -15.7956 0.1653 42 1 3.5424 -15.4084 0.3381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591734605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:58 Heat of formation + Delta-G solvation = -107.312717 kcal Electronic energy + Delta-G solvation = -22236.109136 eV Core-core repulsion = 18626.726095 eV Total energy + Delta-G solvation = -3609.383041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25694 -39.33978 -38.14625 -37.32506 -36.98691 -35.31499 -33.26954 -31.93167 -31.58625 -30.41380 -28.33546 -26.14368 -24.17882 -23.63083 -23.06792 -22.57800 -21.75818 -19.37324 -18.50034 -18.05753 -17.67502 -17.15410 -16.81912 -16.56099 -16.49116 -15.82491 -15.75847 -15.52394 -15.12226 -14.87021 -14.60822 -14.39572 -14.09751 -13.92632 -13.56934 -13.38049 -13.03791 -12.85456 -12.65732 -12.50470 -12.47001 -12.34631 -12.24127 -12.01693 -11.88243 -11.70218 -11.54679 -11.43195 -11.21503 -10.87994 -10.56264 -9.90963 -9.34975 -9.21186 -8.21140 -6.31725 0.13614 0.31946 1.21520 1.39563 1.39989 1.53613 1.95740 2.40649 2.63910 3.12022 3.15208 3.52091 3.73229 3.80946 3.84820 4.00274 4.06931 4.18508 4.24622 4.26161 4.33568 4.38151 4.44202 4.47625 4.64213 4.72865 4.77301 4.96028 5.00259 5.10102 5.10353 5.23790 5.26239 5.44301 5.51948 5.68732 5.74851 5.85676 6.01951 6.25664 6.27803 6.41889 6.85232 6.88016 7.37492 8.90839 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.034731 B = 0.001743 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.008615 B =16056.198523 C =16718.904117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.074 3.926 12 N -0.688 5.688 13 C 0.034 3.966 14 C 0.121 3.879 15 H 0.095 0.905 16 O -0.560 6.560 17 C 0.029 3.971 18 O -0.315 6.315 19 C 0.119 3.881 20 C -0.205 4.205 21 C -0.074 4.074 22 C -0.147 4.147 23 C -0.080 4.080 24 C -0.095 4.095 25 Cl -0.075 7.075 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.343 0.657 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.384 0.616 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -34.016 0.598 34.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.133 4.133 11 C -0.055 4.055 12 N -0.319 5.319 13 C -0.096 4.096 14 C 0.061 3.939 15 H 0.113 0.887 16 O -0.366 6.366 17 C -0.046 4.046 18 O -0.228 6.228 19 C 0.072 3.928 20 C -0.224 4.224 21 C -0.092 4.092 22 C -0.165 4.165 23 C -0.098 4.098 24 C -0.123 4.123 25 Cl -0.046 7.046 26 H 0.073 0.927 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.161 0.839 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.170 0.830 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.410 -33.737 0.377 33.769 hybrid contribution -0.533 1.172 0.567 1.407 sum 0.878 -32.566 0.944 32.591 Atomic orbital electron populations 1.70095 1.07707 1.27702 1.51787 1.25980 0.95824 1.03350 0.94745 0.85395 0.79008 0.78763 0.77857 1.18798 1.20276 1.20235 1.21743 0.93522 0.92541 1.50380 0.92433 1.18977 0.94412 0.93001 0.94884 1.21385 0.98060 0.93214 1.00601 1.21831 0.93793 0.89911 0.99921 1.60316 1.19755 1.01177 1.50639 1.22546 0.95622 0.88718 1.02679 1.21781 0.92148 0.89810 0.90120 0.88684 1.86639 1.37811 1.95963 1.16234 1.23690 0.91613 0.85519 1.03813 1.86194 1.36708 1.12195 1.87706 1.19015 0.92544 0.84138 0.97075 1.21543 0.92580 1.00344 1.07946 1.21483 1.01793 0.91133 0.94808 1.21431 0.91764 1.01092 1.02178 1.21234 0.97190 0.93949 0.97430 1.20555 0.84656 0.93877 1.13168 1.98368 1.12413 1.96961 1.96855 0.92749 0.98850 0.98885 0.93326 0.93138 0.91628 0.95542 0.83905 0.89432 0.92927 0.76705 0.89225 0.89512 0.82972 0.82317 0.82169 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.95 5.41 30.60 0.17 -3.78 16 11 C 0.07 2.45 5.69 86.30 0.49 2.94 16 12 N -0.69 -18.53 6.37 -513.87 -3.27 -21.80 16 13 C 0.03 0.65 5.35 86.30 0.46 1.11 16 14 C 0.12 2.24 3.46 30.60 0.11 2.34 16 15 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 16 O -0.56 -12.79 13.17 -144.32 -1.90 -14.69 16 17 C 0.03 0.42 4.37 71.98 0.31 0.73 16 18 O -0.31 -6.47 9.56 -88.09 -0.84 -7.32 16 19 C 0.12 2.18 6.68 22.52 0.15 2.33 16 20 C -0.21 -2.61 9.04 22.36 0.20 -2.41 16 21 C -0.07 -0.68 10.04 22.26 0.22 -0.46 16 22 C -0.15 -1.35 10.04 22.28 0.22 -1.12 16 23 C -0.08 -1.04 9.83 22.28 0.22 -0.82 16 24 C -0.10 -1.77 6.33 22.41 0.14 -1.63 16 25 Cl -0.07 -1.57 28.50 -2.72 -0.08 -1.65 16 26 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.34 9.01 8.73 -89.69 -0.78 8.22 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.38 6.27 9.04 -74.06 -0.67 5.60 16 37 H 0.09 0.96 7.66 -2.38 -0.02 0.94 16 38 H 0.09 0.92 7.66 -2.39 -0.02 0.90 16 39 H 0.15 1.31 6.30 -2.91 -0.02 1.29 16 40 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 42 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -72.15 370.43 -0.66 -72.81 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -0.43 Total: 12.79 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.54 Total: -30.27 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.99 Total: -78.54 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -2.74 Total: -22.01 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -72.15 -0.66 -72.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591734605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.502 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds