Wall clock time and date at job start Tue Mar 31 2020 10:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99675 * 2 1 4 4 H 1.48497 * 109.46966 * 264.92536 * 3 2 1 5 5 H 1.48498 * 109.47217 * 24.92508 * 3 2 1 6 6 H 1.48499 * 109.46966 * 144.92737 * 3 2 1 7 7 C 1.37878 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99367 * 0.87239 * 7 2 1 9 9 C 1.50695 * 120.00027 * 180.86607 * 7 2 1 10 10 C 1.53005 * 115.54675 * 86.84639 * 9 7 2 11 11 N 1.46500 * 109.47142 * 64.92094 * 10 9 7 12 12 C 1.34776 * 119.99652 * 184.36889 * 11 10 9 13 13 O 1.21612 * 120.00127 * 5.12007 * 12 11 10 14 14 C 1.47466 * 120.00148 * 185.11991 * 12 11 10 15 15 C 1.36230 * 126.36984 * 177.64249 * 14 12 11 16 16 O 1.34271 * 107.12351 * 179.97438 * 15 14 12 17 17 C 1.34481 * 108.17485 * 0.02562 * 16 15 14 18 18 C 1.47868 * 125.49589 * 180.02562 * 17 16 15 19 19 C 1.39981 * 120.55598 * 359.69331 * 18 17 16 20 20 C 1.38360 * 118.29264 * 179.76012 * 19 18 17 21 21 C 1.38348 * 119.30328 * 0.54056 * 20 19 18 22 22 N 1.31913 * 121.07517 * 359.69473 * 21 20 19 23 23 C 1.31713 * 121.87076 * 0.02789 * 22 21 20 24 24 N 1.30897 * 109.01457 * 359.97438 * 17 16 15 25 25 C 1.52999 * 117.50172 * 232.51095 * 9 7 2 26 26 C 1.52995 * 117.50350 * 301.17351 * 9 7 2 27 27 H 0.97000 * 120.00400 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47103 * 304.91651 * 10 9 7 29 29 H 1.09004 * 109.47162 * 184.92066 * 10 9 7 30 30 H 0.96996 * 120.00286 * 4.36030 * 11 10 9 31 31 H 1.07998 * 126.43542 * 359.97115 * 15 14 12 32 32 H 1.08004 * 120.85301 * 359.97438 * 19 18 17 33 33 H 1.07997 * 120.35346 * 180.25976 * 20 19 18 34 34 H 1.07996 * 119.46265 * 179.72607 * 21 20 19 35 35 H 1.07995 * 119.70917 * 180.02562 * 23 22 21 36 36 H 1.08999 * 117.49932 * 215.01032 * 25 9 7 37 37 H 1.09003 * 117.49662 * 0.02734 * 25 9 7 38 38 H 1.09003 * 117.49763 * 359.97438 * 26 9 7 39 39 H 1.08999 * 117.50072 * 144.97033 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6037 1.9846 -1.3946 5 1 1.3969 2.6813 0.5900 6 1 3.4888 1.4736 0.8045 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0133 9 6 3.5114 -1.1940 0.0203 10 6 4.1531 -1.1278 1.4077 11 7 3.8257 -2.3442 2.1557 12 6 4.2117 -2.4693 3.4409 13 8 4.7493 -1.5373 4.0078 14 6 3.9823 -3.7363 4.1597 15 6 4.3579 -4.0192 5.4382 16 8 3.9580 -5.2741 5.6993 17 6 3.3477 -5.7566 4.6024 18 6 2.7595 -7.1069 4.4711 19 6 2.8120 -8.0128 5.5369 20 6 2.2424 -9.2619 5.3646 21 6 1.6548 -9.5767 4.1524 22 7 1.6244 -8.7043 3.1634 23 6 2.1480 -7.5014 3.2809 24 7 3.3572 -4.8379 3.6701 25 6 4.2320 -2.0122 -1.0531 26 6 4.2330 -0.4833 -1.1265 27 1 -0.4851 0.8400 -0.0004 28 1 3.7720 -0.2582 1.9432 29 1 5.2351 -1.0452 1.3040 30 1 3.3310 -3.0594 1.7260 31 1 4.8794 -3.3582 6.1147 32 1 3.2820 -7.7424 6.4710 33 1 2.2603 -9.9851 6.1664 34 1 1.2134 -10.5525 4.0136 35 1 2.1031 -6.8146 2.4487 36 1 5.1632 -2.5034 -0.7708 37 1 3.6162 -2.5502 -1.7738 38 1 3.6178 -0.0160 -1.8955 39 1 5.1646 0.0319 -0.8925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597611567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:57 Heat of formation + Delta-G solvation = 27.754983 kcal Electronic energy + Delta-G solvation = -24543.982653 eV Core-core repulsion = 20839.349093 eV Total energy + Delta-G solvation = -3704.633560 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.55242 -41.05408 -40.63419 -38.75036 -36.13529 -35.02348 -34.28535 -34.21975 -32.93232 -30.54803 -28.70091 -27.39759 -25.59194 -25.08683 -24.13357 -23.34740 -22.56169 -21.47851 -21.04603 -19.52506 -18.42508 -18.11682 -18.01127 -17.63269 -17.08240 -17.04584 -16.85973 -16.57051 -16.09963 -15.56416 -14.98561 -14.95809 -14.82992 -14.80011 -14.52252 -14.31380 -14.11923 -13.81655 -13.10185 -13.02291 -12.71972 -12.61541 -12.19076 -12.02546 -11.99786 -11.66333 -11.41744 -11.38397 -11.00508 -10.67747 -10.62462 -10.60669 -10.39596 -10.01053 -9.58208 -8.30524 -6.38059 -0.60350 0.14202 0.19966 1.12381 1.28767 1.34422 1.38961 1.49028 2.03995 2.18473 2.35982 2.59935 2.77829 3.03926 3.20996 3.45990 3.63759 3.65208 3.78054 3.91752 3.99420 4.04530 4.26546 4.33104 4.39413 4.42971 4.47962 4.58596 4.68476 4.75732 4.82843 4.85810 5.02559 5.07693 5.09342 5.27610 5.41886 5.48690 5.59325 5.67677 6.21330 6.27130 6.57964 6.71010 6.87439 7.07924 7.32423 8.84601 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.003291 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.932893 B = 8504.954511 C = 9262.871609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.303 1.303 6 H -0.242 1.242 7 C -0.481 4.481 8 H 0.037 0.963 9 C -0.043 4.043 10 C 0.162 3.838 11 N -0.686 5.686 12 C 0.592 3.408 13 O -0.575 6.575 14 C -0.093 4.093 15 C 0.046 3.954 16 O -0.181 6.181 17 C 0.241 3.759 18 C -0.087 4.087 19 C -0.042 4.042 20 C -0.157 4.157 21 C 0.112 3.888 22 N -0.509 5.509 23 C 0.137 3.863 24 N -0.467 5.467 25 C -0.154 4.154 26 C -0.187 4.187 27 H 0.265 0.735 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.412 0.588 31 H 0.269 0.731 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.194 0.806 35 H 0.154 0.846 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 -18.565 13.671 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.184 1.184 5 H -0.230 1.230 6 H -0.165 1.165 7 C -0.519 4.519 8 H 0.056 0.944 9 C -0.044 4.044 10 C 0.038 3.962 11 N -0.333 5.333 12 C 0.378 3.622 13 O -0.456 6.456 14 C -0.214 4.214 15 C -0.029 4.029 16 O -0.066 6.066 17 C 0.033 3.967 18 C -0.091 4.091 19 C -0.068 4.068 20 C -0.176 4.176 21 C -0.045 4.045 22 N -0.218 5.218 23 C -0.022 4.022 24 N -0.197 5.197 25 C -0.191 4.191 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.285 0.715 32 H 0.185 0.815 33 H 0.203 0.797 34 H 0.211 0.789 35 H 0.172 0.828 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.485 -18.095 12.625 24.017 hybrid contribution 0.037 1.345 0.812 1.571 sum 9.523 -16.750 13.437 23.490 Atomic orbital electron populations 1.70032 1.08259 1.27981 1.52331 1.25787 0.95179 1.02771 0.93743 0.85965 0.79568 0.78737 0.79706 1.18421 1.23019 1.16516 1.20345 0.88716 0.92770 1.50078 0.94445 1.19437 0.92797 1.04701 0.87506 1.21051 0.97689 0.85961 0.91494 1.45716 1.55344 1.20903 1.11372 1.17052 0.78416 0.85107 0.81624 1.90755 1.46719 1.40193 1.67977 1.21697 1.08441 0.95312 0.95938 1.25955 0.97372 0.82885 0.96642 1.84429 1.56959 1.26434 1.38755 1.23779 0.97117 0.95495 0.80265 1.18390 1.04464 0.87830 0.98422 1.22048 0.94558 0.92470 0.97761 1.22541 0.97994 0.97095 1.00013 1.23724 0.93111 0.99256 0.88421 1.67877 1.17626 1.02661 1.33587 1.22873 0.90724 0.92992 0.95563 1.70941 1.18077 1.00050 1.30638 1.22872 1.01465 0.92740 1.02049 1.23047 1.01866 0.95891 1.01637 0.92649 0.93805 0.91400 0.75233 0.71503 0.81524 0.79651 0.78908 0.82822 0.87835 0.89826 0.90159 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.02 1.33 5.47 84.66 0.46 1.79 16 3 Si 0.94 44.83 24.76 68.60 1.70 46.53 16 4 H -0.26 -11.65 7.01 99.48 0.70 -10.95 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.24 -10.82 5.98 99.48 0.59 -10.23 16 7 C -0.48 -26.72 9.29 25.60 0.24 -26.48 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 9 C -0.04 -1.91 0.85 -52.93 -0.04 -1.96 16 10 C 0.16 6.82 5.22 86.38 0.45 7.27 16 11 N -0.69 -27.70 5.45 -466.31 -2.54 -30.24 16 12 C 0.59 22.66 7.81 86.68 0.68 23.34 16 13 O -0.58 -23.97 16.88 -4.07 -0.07 -24.04 16 14 C -0.09 -2.96 6.99 40.50 0.28 -2.68 16 15 C 0.05 1.04 11.94 67.35 0.80 1.85 16 16 O -0.18 -3.89 10.53 -3.92 -0.04 -3.93 16 17 C 0.24 6.11 7.89 87.38 0.69 6.80 16 18 C -0.09 -1.85 5.89 -20.00 -0.12 -1.96 16 19 C -0.04 -0.55 9.85 22.72 0.22 -0.32 16 20 C -0.16 -1.40 10.10 22.33 0.23 -1.18 16 21 C 0.11 1.45 11.17 84.71 0.95 2.39 16 22 N -0.51 -11.07 10.35 -194.78 -2.02 -13.08 16 23 C 0.14 3.27 10.85 85.02 0.92 4.19 16 24 N -0.47 -14.74 10.68 -294.25 -3.14 -17.89 16 25 C -0.15 -5.71 9.96 30.62 0.30 -5.41 16 26 C -0.19 -7.24 7.60 30.62 0.23 -7.01 16 27 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.04 2.06 6.73 -2.39 -0.02 2.05 16 29 H 0.07 2.55 8.09 -2.39 -0.02 2.54 16 30 H 0.41 16.77 8.17 -92.71 -0.76 16.01 16 31 H 0.27 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.17 1.36 7.97 -2.91 -0.02 1.33 16 33 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 34 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.15 4.11 7.83 -2.91 -0.02 4.09 16 36 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.08 3.31 7.08 -2.39 -0.02 3.30 16 39 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -75.55 344.42 0.71 -74.85 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.22 Total: 26.22 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 6.30 Total: 0.64 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -7.40 Total: -120.27 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.11 Total: -27.97 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.70 Total: 46.53 kcal Total: -75.55 0.71 -74.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.601 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds