Wall clock time and date at job start Tue Mar 31 2020 10:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48496 * 109.47244 * 240.00394 * 3 2 1 5 5 H 1.48501 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46997 * 120.00521 * 3 2 1 7 7 C 1.37877 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99941 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99949 * 275.76727 * 10 9 7 12 12 C 1.50702 * 109.47055 * 269.99815 * 11 10 9 13 13 C 1.38233 * 119.61629 * 94.72911 * 12 11 10 14 14 C 1.38627 * 119.15669 * 179.75748 * 13 12 11 15 15 C 1.38674 * 118.41959 * 0.50401 * 14 13 12 16 16 C 1.38175 * 119.16564 * 359.73650 * 15 14 13 17 17 N 1.31847 * 119.61751 * 274.99811 * 12 11 10 18 18 C 1.34776 * 120.00193 * 95.76464 * 10 9 7 19 19 O 1.21591 * 120.00248 * 184.72969 * 18 10 9 20 20 C 1.47518 * 119.99720 * 4.72840 * 18 10 9 21 21 C 1.39994 * 120.60216 * 306.50056 * 20 18 10 22 22 C 1.38334 * 118.35114 * 179.97438 * 21 20 18 23 23 C 1.38354 * 119.45798 * 0.02562 * 22 21 20 24 24 N 1.31887 * 121.18736 * 359.96940 * 23 22 21 25 25 C 1.32235 * 121.79605 * 0.02760 * 24 23 22 26 26 O 1.35429 * 119.79087 * 179.97438 * 25 24 23 27 27 H 0.96994 * 120.00233 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46843 * 60.00026 * 9 7 2 29 29 H 1.08993 * 109.47189 * 300.00240 * 9 7 2 30 30 H 1.09006 * 109.46934 * 29.99859 * 11 10 9 31 31 H 1.09003 * 109.47084 * 150.00102 * 11 10 9 32 32 H 1.08000 * 120.41858 * 359.97438 * 13 12 11 33 33 H 1.08001 * 120.78710 * 180.26210 * 14 13 12 34 34 H 1.08002 * 120.41189 * 179.71609 * 15 14 13 35 35 H 1.08000 * 119.61546 * 179.97438 * 16 15 14 36 36 H 1.08002 * 120.81819 * 359.97438 * 21 20 18 37 37 H 1.07997 * 120.26773 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.40856 * 180.02562 * 23 22 21 39 39 H 0.96692 * 114.00317 * 90.00655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7761 -4.0865 -1.2629 12 6 1.8981 -5.1677 -1.8384 13 6 0.9333 -4.8393 -2.7723 14 6 0.1343 -5.8421 -3.2993 15 6 0.3294 -7.1420 -2.8575 16 6 1.3104 -7.3937 -1.9175 17 7 2.0556 -6.4151 -1.4415 18 6 2.5520 -4.2010 1.1607 19 8 3.4057 -5.0668 1.1713 20 6 1.8981 -3.7946 2.4191 21 6 1.8666 -2.4489 2.8035 22 6 1.2406 -2.1198 3.9924 23 6 0.6698 -3.1193 4.7602 24 7 0.7110 -4.3811 4.3789 25 6 1.2965 -4.7497 3.2520 26 8 1.3155 -6.0573 2.8999 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.8398 -3.2569 -1.9671 31 1 3.7737 -4.4867 -1.0816 32 1 0.8060 -3.8149 -3.0899 33 1 -0.6246 -5.6157 -4.0335 34 1 -0.2780 -7.9475 -3.2431 35 1 1.4683 -8.4033 -1.5680 36 1 2.3198 -1.6866 2.1871 37 1 1.1985 -1.0912 4.3190 38 1 0.1809 -2.8614 5.6881 39 1 0.5573 -6.3321 2.3665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:03 Heat of formation + Delta-G solvation = 7.178203 kcal Electronic energy + Delta-G solvation = -26062.414073 eV Core-core repulsion = 22356.888237 eV Total energy + Delta-G solvation = -3705.525836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42794 -39.90243 -38.33041 -36.72563 -35.14417 -33.11470 -32.33821 -32.16461 -31.21837 -29.95805 -27.72191 -26.39243 -23.91019 -23.39899 -22.90171 -22.79881 -21.77298 -19.15296 -18.36447 -16.96001 -16.78497 -16.49734 -16.25428 -15.87538 -15.82085 -15.43454 -15.21981 -14.65541 -14.29243 -14.09149 -13.55130 -13.18453 -13.04766 -12.79770 -12.72187 -12.58692 -12.41418 -11.92365 -11.63322 -11.53406 -11.37893 -11.35148 -11.05698 -10.88580 -10.35928 -9.96502 -9.69007 -9.52447 -9.30905 -9.16758 -9.00961 -8.75949 -8.69817 -8.47897 -7.84845 -6.33384 -4.42641 1.17530 1.26013 1.48535 1.61911 3.13516 3.20292 3.22196 3.34653 3.63608 3.86953 4.15987 4.21562 4.25447 4.57674 4.93912 4.97170 4.99004 5.03074 5.22142 5.25178 5.35300 5.38404 5.50482 5.74267 5.75045 5.82956 5.88947 5.99443 6.20265 6.32415 6.36423 6.52376 6.59572 6.60169 6.88680 6.90123 7.05645 7.40032 7.60222 7.79368 7.88992 8.15587 8.21496 8.30119 8.64032 8.93065 9.25558 10.72172 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.006584 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.332745 B = 4251.591085 C = 6310.857143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.234 3.766 10 N -0.588 5.588 11 C 0.169 3.831 12 C 0.119 3.881 13 C -0.155 4.155 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.092 3.908 17 N -0.459 5.459 18 C 0.566 3.434 19 O -0.530 6.530 20 C -0.182 4.182 21 C -0.008 4.008 22 C -0.190 4.190 23 C 0.128 3.872 24 N -0.516 5.516 25 C 0.341 3.659 26 O -0.469 6.469 27 H 0.268 0.732 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -6.086 -1.902 6.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.115 3.885 10 N -0.319 5.319 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.175 4.175 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.066 4.066 17 N -0.168 5.168 18 C 0.352 3.648 19 O -0.407 6.407 20 C -0.189 4.189 21 C -0.033 4.033 22 C -0.210 4.210 23 C -0.029 4.029 24 N -0.235 5.235 25 C 0.162 3.838 26 O -0.275 6.275 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.189 0.811 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.224 -7.294 -0.498 7.413 hybrid contribution -0.668 1.833 -1.511 2.468 sum -1.892 -5.461 -2.009 6.118 Atomic orbital electron populations 1.69913 1.06028 1.27659 1.48367 1.24943 0.94811 0.99205 0.94444 0.86620 0.79650 0.82563 0.79121 1.19961 1.21068 1.19856 1.21449 0.93748 0.90305 1.52995 0.91688 1.19547 0.87674 0.82498 0.98830 1.48050 1.45605 1.34248 1.03984 1.20130 0.95855 0.93272 0.86304 1.21897 0.95027 0.92439 0.92700 1.22127 0.96303 1.00832 0.98246 1.21551 0.98021 0.92824 0.98322 1.22099 1.00414 0.97572 1.00059 1.22773 0.91749 0.98482 0.93550 1.67655 1.25240 1.00137 1.23734 1.17854 0.82461 0.81303 0.83178 1.90762 1.31777 1.31703 1.86452 1.21015 1.05629 0.94573 0.97646 1.22512 0.91550 0.95136 0.94116 1.22089 1.01296 1.01254 0.96377 1.22564 0.94934 0.86700 0.98735 1.67165 1.19320 1.20560 1.16472 1.19064 0.92413 0.83884 0.88459 1.84761 1.48343 1.20975 1.73374 0.92252 0.94803 0.94156 0.88408 0.88931 0.84438 0.85143 0.85326 0.83213 0.81053 0.84260 0.82571 0.74895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.31 13.29 55.43 0.74 -21.57 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 18.82 29.54 -169.99 -5.02 13.80 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.55 -12.79 7.04 -34.44 -0.24 -13.03 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.23 5.19 4.68 -5.19 -0.02 5.17 16 10 N -0.59 -12.11 2.44 -177.67 -0.43 -12.54 16 11 C 0.17 3.11 5.77 -5.19 -0.03 3.08 16 12 C 0.12 2.04 6.36 -82.59 -0.53 1.51 16 13 C -0.15 -2.30 9.72 -39.44 -0.38 -2.69 16 14 C -0.08 -1.01 10.18 -39.28 -0.40 -1.41 16 15 C -0.18 -2.16 10.11 -39.44 -0.40 -2.55 16 16 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 17 N -0.46 -8.06 10.27 -9.47 -0.10 -8.16 16 18 C 0.57 12.32 6.87 -12.48 -0.09 12.23 16 19 O -0.53 -12.75 16.30 1.83 0.03 -12.72 16 20 C -0.18 -3.72 4.76 -104.69 -0.50 -4.22 16 21 C -0.01 -0.15 7.80 -38.89 -0.30 -0.45 16 22 C -0.19 -3.07 10.09 -39.50 -0.40 -3.47 16 23 C 0.13 1.98 11.17 -17.49 -0.20 1.79 16 24 N -0.52 -9.40 10.37 -12.98 -0.13 -9.53 16 25 C 0.34 6.68 7.76 -16.61 -0.13 6.55 16 26 O -0.47 -8.78 12.76 -21.44 -0.27 -9.05 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 29 H 0.04 0.96 5.64 -51.93 -0.29 0.66 16 30 H 0.10 1.66 7.97 -51.93 -0.41 1.25 16 31 H 0.09 1.78 7.36 -51.93 -0.38 1.40 16 32 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.17 3.53 5.43 -52.49 -0.28 3.25 16 37 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.39 5.70 9.06 45.56 0.41 6.11 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -30.89 343.28 -7.39 -38.28 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -3.46 Total: 11.15 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.91 Total: 5.18 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.07 Total: -51.81 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.24 Total: -21.77 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.89 -7.39 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.459 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds