Wall clock time and date at job start Tue Mar 31 2020 10:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48496 * 109.47244 * 240.00394 * 3 2 1 5 5 H 1.48501 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46997 * 120.00521 * 3 2 1 7 7 C 1.37877 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99941 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99949 * 275.76727 * 10 9 7 12 12 C 1.50702 * 109.47055 * 269.99815 * 11 10 9 13 13 C 1.38233 * 119.61629 * 94.72911 * 12 11 10 14 14 C 1.38627 * 119.15669 * 179.75748 * 13 12 11 15 15 C 1.38674 * 118.41959 * 0.50401 * 14 13 12 16 16 C 1.38175 * 119.16564 * 359.73650 * 15 14 13 17 17 N 1.31847 * 119.61751 * 274.99811 * 12 11 10 18 18 C 1.34776 * 120.00193 * 95.76464 * 10 9 7 19 19 O 1.21591 * 120.00248 * 184.72969 * 18 10 9 20 20 C 1.47518 * 119.99720 * 4.72840 * 18 10 9 21 21 C 1.39994 * 120.60216 * 306.50056 * 20 18 10 22 22 C 1.38334 * 118.35114 * 179.97438 * 21 20 18 23 23 C 1.38354 * 119.45798 * 0.02562 * 22 21 20 24 24 N 1.31887 * 121.18736 * 359.96940 * 23 22 21 25 25 C 1.32235 * 121.79605 * 0.02760 * 24 23 22 26 26 O 1.35429 * 119.79087 * 179.97438 * 25 24 23 27 27 H 0.96994 * 120.00233 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46843 * 60.00026 * 9 7 2 29 29 H 1.08993 * 109.47189 * 300.00240 * 9 7 2 30 30 H 1.09006 * 109.46934 * 29.99859 * 11 10 9 31 31 H 1.09003 * 109.47084 * 150.00102 * 11 10 9 32 32 H 1.08000 * 120.41858 * 359.97438 * 13 12 11 33 33 H 1.08001 * 120.78710 * 180.26210 * 14 13 12 34 34 H 1.08002 * 120.41189 * 179.71609 * 15 14 13 35 35 H 1.08000 * 119.61546 * 179.97438 * 16 15 14 36 36 H 1.08002 * 120.81819 * 359.97438 * 21 20 18 37 37 H 1.07997 * 120.26773 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.40856 * 180.02562 * 23 22 21 39 39 H 0.96692 * 114.00317 * 90.00655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7761 -4.0865 -1.2629 12 6 1.8981 -5.1677 -1.8384 13 6 0.9333 -4.8393 -2.7723 14 6 0.1343 -5.8421 -3.2993 15 6 0.3294 -7.1420 -2.8575 16 6 1.3104 -7.3937 -1.9175 17 7 2.0556 -6.4151 -1.4415 18 6 2.5520 -4.2010 1.1607 19 8 3.4057 -5.0668 1.1713 20 6 1.8981 -3.7946 2.4191 21 6 1.8666 -2.4489 2.8035 22 6 1.2406 -2.1198 3.9924 23 6 0.6698 -3.1193 4.7602 24 7 0.7110 -4.3811 4.3789 25 6 1.2965 -4.7497 3.2520 26 8 1.3155 -6.0573 2.8999 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.8398 -3.2569 -1.9671 31 1 3.7737 -4.4867 -1.0816 32 1 0.8060 -3.8149 -3.0899 33 1 -0.6246 -5.6157 -4.0335 34 1 -0.2780 -7.9475 -3.2431 35 1 1.4683 -8.4033 -1.5680 36 1 2.3198 -1.6866 2.1871 37 1 1.1985 -1.0912 4.3190 38 1 0.1809 -2.8614 5.6881 39 1 0.5573 -6.3321 2.3665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:03 Heat of formation + Delta-G solvation = -15.251106 kcal Electronic energy + Delta-G solvation = -26063.386681 eV Core-core repulsion = 22356.888237 eV Total energy + Delta-G solvation = -3706.498444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89104 -41.09697 -39.88146 -38.15617 -36.84534 -34.76879 -33.85685 -33.31939 -32.52632 -31.33960 -29.43517 -27.85799 -25.42531 -24.79588 -24.29050 -24.22378 -23.02096 -20.70372 -19.79830 -18.69123 -18.24978 -17.98664 -17.62434 -17.26344 -17.07005 -16.86665 -16.44300 -16.36893 -15.72101 -15.52338 -14.97500 -14.50950 -14.34145 -14.24086 -14.14212 -14.05150 -13.84650 -13.41349 -13.26373 -13.07233 -12.79538 -12.72495 -12.63033 -12.55901 -12.10594 -11.76539 -11.15853 -10.81189 -10.79005 -10.53507 -10.42982 -10.34123 -9.94769 -9.91379 -9.51971 -8.19071 -6.33797 -0.22917 0.13596 0.19306 0.41514 1.45864 1.48970 1.54801 1.72688 2.16169 2.42452 2.51579 2.80188 2.99210 3.10553 3.40267 3.55502 3.80281 3.88427 4.03947 4.04539 4.13191 4.19511 4.26976 4.42646 4.50686 4.57198 4.60989 4.78647 4.83980 4.87986 5.12772 5.17148 5.20991 5.25048 5.29394 5.54114 5.65205 5.76543 5.82569 6.03908 6.43615 6.50546 6.77578 6.82339 7.15023 7.23083 7.38928 8.86023 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.006584 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.332745 B = 4251.591085 C = 6310.857143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.037 3.963 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.254 3.746 10 N -0.584 5.584 11 C 0.168 3.832 12 C 0.093 3.907 13 C -0.164 4.164 14 C -0.078 4.078 15 C -0.163 4.163 16 C 0.079 3.921 17 N -0.498 5.498 18 C 0.564 3.436 19 O -0.563 6.563 20 C -0.208 4.208 21 C -0.022 4.022 22 C -0.183 4.183 23 C 0.140 3.860 24 N -0.525 5.525 25 C 0.332 3.668 26 O -0.481 6.481 27 H 0.269 0.731 28 H 0.020 0.980 29 H 0.027 0.973 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.206 0.794 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 -5.941 -1.683 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.134 3.866 10 N -0.315 5.315 11 C 0.044 3.956 12 C -0.045 4.045 13 C -0.185 4.185 14 C -0.103 4.103 15 C -0.183 4.183 16 C -0.079 4.079 17 N -0.208 5.208 18 C 0.352 3.648 19 O -0.443 6.443 20 C -0.215 4.215 21 C -0.048 4.048 22 C -0.202 4.202 23 C -0.017 4.017 24 N -0.245 5.245 25 C 0.153 3.847 26 O -0.289 6.289 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.156 0.844 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.190 0.810 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.223 0.777 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.743 -7.150 -0.303 7.664 hybrid contribution -0.251 1.721 -1.581 2.350 sum -2.995 -5.429 -1.884 6.480 Atomic orbital electron populations 1.69998 1.07133 1.28329 1.49287 1.25497 0.95337 1.01651 0.94022 0.85756 0.78532 0.79247 0.79098 1.20092 1.20880 1.19214 1.21508 0.93339 0.90984 1.52706 0.92502 1.19189 0.87431 0.82629 0.97349 1.48039 1.44998 1.33718 1.04698 1.20162 0.95549 0.94237 0.85619 1.21591 0.96299 0.92169 0.94435 1.22198 0.96387 1.01748 0.98124 1.21976 0.97739 0.92413 0.98216 1.22520 0.99191 0.98440 0.98135 1.23264 0.91922 0.98653 0.94029 1.67547 1.27138 1.00863 1.25287 1.18130 0.82055 0.80784 0.83872 1.90721 1.33314 1.33247 1.87005 1.21009 1.07297 0.95579 0.97600 1.22424 0.92693 0.94156 0.95516 1.22440 0.99742 1.03124 0.94919 1.23375 0.93249 0.85413 0.99646 1.67293 1.19413 1.21995 1.15755 1.19149 0.92751 0.83865 0.88902 1.84704 1.49576 1.20877 1.73768 0.92176 0.96156 0.95523 0.87814 0.90627 0.84421 0.81718 0.81167 0.81040 0.82892 0.81128 0.77709 0.73254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.96 13.29 21.45 0.28 -45.67 16 2 C 0.04 1.77 5.46 84.65 0.46 2.24 16 3 Si 0.95 38.30 29.54 68.60 2.03 40.33 16 4 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.55 -26.12 7.04 25.60 0.18 -25.94 16 8 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.25 11.67 4.68 85.63 0.40 12.07 16 10 N -0.58 -25.30 2.44 -834.28 -2.04 -27.34 16 11 C 0.17 6.58 5.77 85.63 0.49 7.07 16 12 C 0.09 3.32 6.36 42.56 0.27 3.59 16 13 C -0.16 -4.87 9.72 22.36 0.22 -4.66 16 14 C -0.08 -1.76 10.18 22.47 0.23 -1.53 16 15 C -0.16 -3.41 10.11 22.36 0.23 -3.18 16 16 C 0.08 2.11 11.18 84.67 0.95 3.06 16 17 N -0.50 -17.93 10.27 -183.89 -1.89 -19.82 16 18 C 0.56 25.76 6.87 86.69 0.60 26.36 16 19 O -0.56 -28.56 16.30 -0.69 -0.01 -28.57 16 20 C -0.21 -8.75 4.76 -19.91 -0.09 -8.84 16 21 C -0.02 -0.86 7.80 22.72 0.18 -0.68 16 22 C -0.18 -5.55 10.09 22.32 0.23 -5.33 16 23 C 0.14 3.95 11.17 84.71 0.95 4.89 16 24 N -0.53 -18.39 10.37 -307.99 -3.19 -21.59 16 25 C 0.33 13.09 7.76 85.13 0.66 13.75 16 26 O -0.48 -18.38 12.76 -83.94 -1.07 -19.45 16 27 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 28 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 29 H 0.03 1.31 5.64 -2.39 -0.01 1.29 16 30 H 0.10 3.77 7.97 -2.38 -0.02 3.75 16 31 H 0.08 3.15 7.36 -2.39 -0.02 3.14 16 32 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.15 6.46 5.43 -2.91 -0.02 6.45 16 37 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.21 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.41 12.13 9.06 -74.06 -0.67 11.46 16 Total: -1.00 -68.63 343.28 0.47 -68.15 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.43 Total: 31.09 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 5.94 Total: 22.86 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -6.84 Total: -114.42 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.08 Total: -48.02 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -68.63 0.47 -68.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.902 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds