Wall clock time and date at job start Tue Mar 31 2020 10:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86792 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47136 * 299.99842 * 3 2 1 6 6 H 1.48507 * 109.47015 * 59.99730 * 3 2 1 7 7 C 1.40034 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00061 * 189.72985 * 7 2 1 9 9 C 1.41542 * 120.00033 * 9.73380 * 7 2 1 10 10 C 1.41176 * 120.99603 * 26.35737 * 9 7 2 11 11 C 1.37598 * 119.01069 * 180.25198 * 10 9 7 12 12 N 1.32075 * 121.10999 * 359.75325 * 11 10 9 13 13 C 1.32466 * 122.23641 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.58198 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99909 * 354.61838 * 14 13 12 16 16 O 1.21272 * 120.00290 * 354.92448 * 15 14 13 17 17 C 1.50697 * 119.99814 * 174.93133 * 15 14 13 18 18 C 1.53000 * 109.47270 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.47445 * 179.97438 * 18 17 15 20 20 C 1.35766 * 119.61995 * 90.00441 * 19 18 17 21 21 C 1.35346 * 120.70132 * 179.97438 * 20 19 18 22 22 C 1.40202 * 119.94743 * 0.02562 * 21 20 19 23 23 C 1.36396 * 119.26223 * 359.97438 * 22 21 20 24 24 C 1.34651 * 119.62634 * 269.72981 * 19 18 17 25 25 O 1.22062 * 119.98765 * 359.97438 * 24 19 18 26 26 C 1.38596 * 120.83890 * 359.97438 * 13 12 11 27 27 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.49594 * 0.02772 * 10 9 7 29 29 H 1.08000 * 119.43913 * 179.76880 * 11 10 9 30 30 H 0.97005 * 120.00087 * 174.61430 * 14 13 12 31 31 H 1.09001 * 109.47150 * 299.99448 * 17 15 14 32 32 H 1.09003 * 109.47528 * 59.99356 * 17 15 14 33 33 H 1.08991 * 109.47111 * 300.00186 * 18 17 15 34 34 H 1.09010 * 109.46818 * 59.99889 * 18 17 15 35 35 H 1.07998 * 119.64678 * 359.97438 * 20 19 18 36 36 H 1.07998 * 120.02710 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.36334 * 179.97438 * 22 21 20 38 38 H 1.08006 * 120.34607 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.60291 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0760 -1.2194 0.1586 9 6 1.3152 -2.4298 -0.2062 10 6 0.1059 -2.4637 -0.9338 11 6 -0.5360 -3.6686 -1.1057 12 7 -0.0367 -4.7850 -0.6069 13 6 1.0963 -4.8077 0.0792 14 7 1.5733 -6.0186 0.5807 15 6 0.8308 -7.1369 0.4608 16 8 -0.2895 -7.0746 0.0006 17 6 1.3926 -8.4649 0.8989 18 6 0.3544 -9.5625 0.6575 19 7 0.9008 -10.8536 1.0828 20 6 0.7163 -11.2721 2.3611 21 6 1.2112 -12.4611 2.7772 22 6 1.9233 -13.2740 1.8840 23 6 2.1076 -12.8518 0.6002 24 6 1.5755 -11.6142 0.1999 25 8 1.7284 -11.2268 -0.9474 26 6 1.8141 -3.6437 0.3041 27 1 -0.4850 0.8401 0.0004 28 1 -0.3112 -1.5570 -1.3463 29 1 -1.4635 -3.7020 -1.6579 30 1 2.4396 -6.0558 1.0157 31 1 2.2939 -8.6847 0.3266 32 1 1.6373 -8.4237 1.9603 33 1 -0.5466 -9.3426 1.2300 34 1 0.1095 -9.6039 -0.4039 35 1 0.1689 -10.6495 3.0532 36 1 1.0583 -12.7831 3.7967 37 1 2.3214 -14.2238 2.2090 38 1 2.6530 -13.4642 -0.1026 39 1 2.7372 -3.6666 0.8643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:21 Heat of formation + Delta-G solvation = 2.279658 kcal Electronic energy + Delta-G solvation = -24116.377978 eV Core-core repulsion = 20410.639725 eV Total energy + Delta-G solvation = -3705.738253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.56280 -39.69904 -37.90683 -37.07754 -35.28815 -34.50227 -33.60952 -31.35366 -30.69762 -30.05198 -28.52805 -26.05497 -25.47228 -23.95462 -22.66849 -21.85712 -21.43595 -19.66279 -17.95422 -17.90469 -17.53673 -16.83595 -16.33408 -15.98271 -15.67393 -15.44130 -15.15005 -14.75826 -14.36400 -14.23022 -13.93121 -13.69820 -13.49736 -12.95425 -12.75825 -12.61285 -12.41593 -12.33072 -12.15876 -11.97215 -11.47709 -11.30904 -11.25541 -11.01158 -10.43149 -10.39899 -10.10946 -10.03594 -9.80202 -9.48207 -9.43873 -8.23140 -8.05204 -7.78839 -7.08036 -6.78649 -4.66022 0.56472 1.62727 2.36228 2.49203 2.71712 3.00563 3.05592 3.11964 3.37249 3.41450 3.57490 3.83786 4.29751 4.40709 4.60482 4.64699 4.66881 4.83567 4.93867 4.96062 5.07398 5.24953 5.54913 5.65256 5.68914 5.71595 5.83959 5.96891 5.98958 6.25804 6.52635 6.54385 6.74514 6.86429 6.88536 7.11031 7.36207 7.46513 7.71744 7.85043 7.86906 8.14198 8.43018 8.61316 8.71880 8.78256 9.64653 10.07316 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.037016 B = 0.002240 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.252677 B =12497.726326 C =12695.154000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.220 4.220 11 C 0.102 3.898 12 N -0.554 5.554 13 C 0.346 3.654 14 N -0.660 5.660 15 C 0.505 3.495 16 O -0.479 6.479 17 C -0.155 4.155 18 C 0.105 3.895 19 N -0.495 5.495 20 C 0.138 3.862 21 C -0.239 4.239 22 C -0.018 4.018 23 C -0.246 4.246 24 C 0.509 3.491 25 O -0.547 6.547 26 C -0.301 4.301 27 H 0.282 0.718 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.407 0.593 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -18.342 8.472 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.243 4.243 11 C -0.049 4.049 12 N -0.273 5.273 13 C 0.119 3.881 14 N -0.306 5.306 15 C 0.289 3.711 16 O -0.349 6.349 17 C -0.196 4.196 18 C -0.016 4.016 19 N -0.205 5.205 20 C 0.010 3.990 21 C -0.263 4.263 22 C -0.039 4.039 23 C -0.267 4.267 24 C 0.311 3.689 25 O -0.428 6.428 26 C -0.327 4.327 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.241 0.759 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.180 0.820 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.164 0.836 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.041 -18.704 7.213 20.150 hybrid contribution 1.339 1.538 0.653 2.141 sum 3.380 -17.165 7.866 19.182 Atomic orbital electron populations 1.69757 1.07587 1.29315 1.35008 1.25977 0.94891 1.01553 0.92019 0.86134 0.80737 0.80453 0.78663 1.18360 1.19604 1.19848 1.19600 0.95784 0.89960 1.43191 0.90093 1.17621 0.90935 0.91520 0.86423 1.22341 0.99526 0.98137 1.04336 1.21921 0.97937 0.88022 0.96999 1.67170 1.12976 1.30438 1.16701 1.17982 0.92162 0.83549 0.94432 1.43426 1.21681 1.07001 1.58447 1.20244 0.86268 0.84785 0.79799 1.90807 1.17722 1.85677 1.40735 1.21956 1.00893 0.93058 1.03675 1.21757 0.96001 0.78845 1.04998 1.45670 1.45453 1.19141 1.10224 1.22056 0.95485 0.96061 0.85403 1.20649 1.07730 0.96011 1.01868 1.21435 0.91631 0.98261 0.92621 1.22147 1.08517 0.97734 0.98348 1.17231 0.80141 0.86026 0.85527 1.91005 1.60081 1.73822 1.17937 1.21231 1.04879 0.92547 1.14006 0.90678 0.84993 0.85823 0.75860 0.88209 0.88722 0.87992 0.87015 0.82011 0.83833 0.84942 0.83584 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.80 10.70 55.55 0.59 -19.20 16 2 C 0.07 1.80 5.31 -17.34 -0.09 1.71 16 3 Si 0.92 17.96 29.57 -169.99 -5.03 12.94 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.45 -11.60 9.13 -37.65 -0.34 -11.94 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 9 C 0.14 3.76 5.60 -106.55 -0.60 3.16 16 10 C -0.22 -5.72 8.77 -38.70 -0.34 -6.06 16 11 C 0.10 2.56 11.15 -17.68 -0.20 2.36 16 12 N -0.55 -14.11 7.89 -12.52 -0.10 -14.21 16 13 C 0.35 8.06 7.40 -154.71 -1.15 6.91 16 14 N -0.66 -11.84 5.39 -11.49 -0.06 -11.91 16 15 C 0.51 8.70 7.78 -10.99 -0.09 8.62 16 16 O -0.48 -10.34 14.27 5.56 0.08 -10.26 16 17 C -0.15 -1.81 6.03 -27.88 -0.17 -1.98 16 18 C 0.11 1.23 4.63 -4.04 -0.02 1.21 16 19 N -0.49 -5.07 2.58 -119.77 -0.31 -5.38 16 20 C 0.14 0.92 10.28 -16.84 -0.17 0.75 16 21 C -0.24 -1.36 10.01 -39.88 -0.40 -1.76 16 22 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 23 C -0.25 -2.37 9.99 -39.38 -0.39 -2.76 16 24 C 0.51 6.54 7.41 -15.45 -0.11 6.43 16 25 O -0.55 -9.44 16.63 4.86 0.08 -9.36 16 26 C -0.30 -7.17 9.73 -38.47 -0.37 -7.55 16 27 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 28 H 0.13 3.48 6.11 -52.49 -0.32 3.15 16 29 H 0.12 2.78 8.06 -52.49 -0.42 2.36 16 30 H 0.41 5.59 8.70 -40.82 -0.36 5.23 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.03 7.97 -51.93 -0.41 0.62 16 34 H 0.11 1.64 7.33 -51.92 -0.38 1.26 16 35 H 0.16 0.59 8.04 -52.49 -0.42 0.17 16 36 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -34.96 342.57 -8.82 -43.78 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.40 Total: 9.88 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -4.84 Total: -1.43 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.12 Total: -50.70 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.16 Total: -19.62 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.96 -8.82 -43.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.056 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds